Wall clock time and date at job start Tue Mar 31 2020 00:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 C 1.50700 * 110.43754 * 300.48300 * 3 2 1 5 5 O 1.21277 * 120.00408 * 122.66860 * 4 3 2 6 6 N 1.34778 * 119.99823 * 302.67688 * 4 3 2 7 7 C 1.46921 * 120.63373 * 354.67485 * 6 4 3 8 8 C 1.53195 * 108.77785 * 233.63426 * 7 6 4 9 9 C 1.53042 * 109.31180 * 305.36158 * 8 7 6 10 10 C 1.53041 * 109.53531 * 61.36508 * 9 8 7 11 11 H 1.08999 * 109.49859 * 58.58689 * 10 9 8 12 12 C 1.50701 * 109.49602 * 178.68374 * 10 9 8 13 13 H 1.08002 * 119.99934 * 119.99710 * 12 10 9 14 14 C 1.37872 * 120.00254 * 300.00059 * 12 10 9 15 15 N 1.31520 * 119.99685 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00216 * 180.02562 * 14 12 10 17 17 H 1.48487 * 109.47056 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47028 * 120.00285 * 16 14 12 19 19 H 1.48504 * 109.46689 * 239.99767 * 16 14 12 20 20 C 1.46928 * 120.63188 * 174.70034 * 6 4 3 21 21 C 1.54888 * 110.48990 * 63.02664 * 3 2 1 22 22 C 1.55242 * 102.58789 * 156.67280 * 21 3 2 23 23 C 1.54268 * 104.23287 * 322.08459 * 22 21 3 24 24 C 1.53879 * 106.59632 * 23.61079 * 23 22 21 25 25 H 1.08997 * 109.47116 * 176.96989 * 1 2 3 26 26 H 1.09001 * 109.47096 * 296.96901 * 1 2 3 27 27 H 1.09004 * 109.47007 * 56.96336 * 1 2 3 28 28 H 1.09001 * 109.46862 * 239.99953 * 2 1 3 29 29 H 1.09001 * 109.46830 * 119.99609 * 2 1 3 30 30 H 1.08995 * 109.59195 * 113.84122 * 7 6 4 31 31 H 1.09009 * 109.58446 * 353.41722 * 7 6 4 32 32 H 1.09001 * 109.49798 * 185.41173 * 8 7 6 33 33 H 1.08998 * 109.52205 * 65.32839 * 8 7 6 34 34 H 1.08994 * 109.46240 * 181.38410 * 9 8 7 35 35 H 1.09001 * 109.45848 * 301.34731 * 9 8 7 36 36 H 0.97005 * 120.00062 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.58670 * 246.15706 * 20 6 4 38 38 H 1.09004 * 109.58258 * 6.43449 * 20 6 4 39 39 H 1.09005 * 110.75831 * 275.06753 * 21 3 2 40 40 H 1.09002 * 110.75310 * 38.43473 * 21 3 2 41 41 H 1.08999 * 110.46493 * 203.39396 * 22 21 3 42 42 H 1.08994 * 110.57680 * 80.83245 * 22 21 3 43 43 H 1.09000 * 110.03217 * 264.32761 * 23 22 21 44 44 H 1.08998 * 110.02873 * 142.89612 * 23 22 21 45 45 H 1.08999 * 110.03039 * 240.71396 * 24 23 22 46 46 H 1.08997 * 110.02768 * 119.28265 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5400 2.1774 -1.2169 5 8 0.8921 3.1945 -1.0876 6 7 1.8126 1.7042 -2.4491 7 6 2.6921 0.5408 -2.6267 8 6 3.8097 0.9124 -3.6063 9 6 3.1914 1.4367 -4.9044 10 6 2.3703 2.6939 -4.6088 11 1 3.0126 3.4502 -4.1577 12 6 1.7884 3.2278 -5.8923 13 1 0.7176 3.3113 -6.0062 14 6 2.6228 3.6097 -6.9213 15 7 3.9268 3.5084 -6.7824 16 14 1.9015 4.2722 -8.5119 17 1 0.4199 4.2860 -8.4155 18 1 2.3961 5.6533 -8.7423 19 1 2.3155 3.4031 -9.6428 20 6 1.2364 2.3425 -3.6406 21 6 1.6002 2.1730 1.2931 22 6 2.6509 3.3095 1.4136 23 6 3.9700 2.6572 0.9506 24 6 3.5815 1.4701 0.0518 25 1 -0.3633 -1.0262 -0.0543 26 1 -0.3633 0.4661 0.9159 27 1 -0.3633 0.5603 -0.8615 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1173 -0.2940 -3.0276 31 1 3.1259 0.2608 -1.6666 32 1 4.4133 0.0305 -3.8211 33 1 4.4389 1.6853 -3.1649 34 1 3.9840 1.6787 -5.6123 35 1 2.5433 0.6720 -5.3326 36 1 4.5139 3.7768 -7.5065 37 1 0.5429 1.6546 -4.1242 38 1 0.7074 3.2499 -3.3492 39 1 0.5958 2.5821 1.1832 40 1 1.6542 1.5041 2.1520 41 1 2.7332 3.6443 2.4476 42 1 2.3890 4.1439 0.7631 43 1 4.5344 2.3032 1.8133 44 1 4.5633 3.3755 0.3849 45 1 3.9575 0.5401 0.4783 46 1 3.9863 1.6124 -0.9501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397689538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:24 Heat of formation + Delta-G solvation = -57.901746 kcal Electronic energy + Delta-G solvation = -23899.640629 eV Core-core repulsion = 20788.033096 eV Total energy + Delta-G solvation = -3111.607534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67359 -37.55861 -36.39322 -33.80999 -32.95841 -31.24541 -30.33445 -28.60187 -27.80756 -25.09684 -24.79511 -22.85153 -21.65927 -21.42648 -20.36665 -19.25651 -18.00444 -16.50501 -15.99658 -15.73849 -15.27426 -14.82018 -14.58584 -14.30368 -13.80037 -13.50277 -13.30168 -13.07055 -12.82471 -12.70207 -12.56943 -12.15466 -12.04508 -11.86292 -11.35521 -11.23785 -11.08765 -10.97656 -10.90029 -10.82110 -10.67973 -10.51510 -10.40998 -10.34179 -10.21833 -9.89678 -9.73599 -9.41324 -9.07911 -8.76936 -8.37957 -7.82572 -6.01398 -4.08328 3.14088 3.28830 3.37022 3.41170 3.60667 4.42940 4.47904 4.63674 4.68030 5.03890 5.16127 5.24526 5.27972 5.32528 5.41841 5.49468 5.57176 5.62748 5.69773 5.74146 5.81691 5.85069 5.92206 5.94024 5.99183 6.03556 6.14788 6.16513 6.24743 6.29914 6.34821 6.35658 6.45280 6.50739 6.52938 6.69025 6.84272 7.02927 7.19444 7.35585 7.70107 7.94139 8.08294 8.10250 8.39096 8.75272 8.95870 9.56585 11.04080 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.004913 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.382014 B = 5698.261129 C = 5741.147977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.083 4.083 4 C 0.527 3.473 5 O -0.549 6.549 6 N -0.601 5.601 7 C 0.097 3.903 8 C -0.136 4.136 9 C -0.112 4.112 10 C 0.040 3.960 11 H 0.029 0.971 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.117 3.883 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.259 0.741 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -8.589 14.586 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.086 4.086 4 C 0.315 3.685 5 O -0.428 6.428 6 N -0.333 5.333 7 C -0.026 4.026 8 C -0.174 4.174 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.004 4.004 21 C -0.135 4.135 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.404 -8.014 14.534 16.602 hybrid contribution -0.183 0.268 -1.061 1.110 sum -0.587 -7.745 13.473 15.552 Atomic orbital electron populations 1.21786 0.95443 1.01447 1.02334 1.21851 0.96655 0.94152 1.02960 1.21658 0.96395 0.95913 0.94650 1.20173 0.79735 0.84583 0.84041 1.90625 1.41357 1.24669 1.86103 1.48189 1.47648 1.31088 1.06325 1.22110 0.92275 0.87980 1.00199 1.22027 0.96834 1.00256 0.98295 1.21619 1.01154 0.97305 0.94886 1.18958 0.92065 0.93767 0.93070 0.95329 1.21124 0.93096 1.42057 0.98809 0.92491 1.24936 0.94813 0.95482 0.98599 1.69888 1.02265 1.48046 1.32630 0.86534 0.79402 0.78635 0.83434 1.19741 1.21029 1.21056 1.21963 0.97451 0.96978 0.83979 1.22433 1.00002 0.96517 0.94577 1.22414 0.94363 0.98661 1.00785 1.22126 0.97838 0.97258 0.98901 1.22435 0.93118 0.99086 1.01264 0.92713 0.92521 0.92533 0.90468 0.91214 0.92239 0.89675 0.92549 0.92436 0.88688 0.94652 0.93067 0.92927 0.90446 0.90430 0.91375 0.92053 0.90804 0.91974 0.91802 0.90924 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.48 37.16 0.35 -1.43 16 2 C -0.12 -1.33 4.53 -26.73 -0.12 -1.45 16 3 C -0.08 -1.12 0.27 -154.00 -0.04 -1.16 16 4 C 0.53 9.52 5.00 -10.99 -0.05 9.47 16 5 O -0.55 -11.86 14.48 5.56 0.08 -11.78 16 6 N -0.60 -11.12 2.96 -172.77 -0.51 -11.64 16 7 C 0.10 1.51 3.89 -3.71 -0.01 1.50 16 8 C -0.14 -2.41 5.96 -26.61 -0.16 -2.57 16 9 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 10 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.07 11.31 55.43 0.63 -24.44 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.12 2.57 5.66 -3.71 -0.02 2.55 16 21 C -0.10 -1.24 4.58 -24.55 -0.11 -1.35 16 22 C -0.12 -1.61 6.52 -24.88 -0.16 -1.77 16 23 C -0.12 -1.48 6.80 -25.61 -0.17 -1.66 16 24 C -0.12 -1.49 4.59 -25.61 -0.12 -1.61 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.63 7.41 -51.93 -0.38 0.24 16 27 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 28 H 0.08 0.86 4.99 -51.93 -0.26 0.60 16 29 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.09 1.10 3.21 -51.92 -0.17 0.93 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 34 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 39 H 0.08 1.11 7.35 -51.93 -0.38 0.73 16 40 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.15 7.61 -51.93 -0.40 0.76 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 46 H 0.08 1.09 5.52 -51.93 -0.29 0.80 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -29.60 335.27 -9.04 -38.64 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.91 Total: 1.94 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.35 Total: -13.96 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.12 Total: -36.08 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.60 -9.04 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397689538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.263 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds