Wall clock time and date at job start Tue Mar 31 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09003 * 115.54795 * 29.32827 * 5 4 2 7 7 C 1.53000 * 117.50165 * 243.62462 * 5 4 2 8 8 C 1.52994 * 59.99907 * 252.50793 * 7 5 4 9 9 H 1.09002 * 117.49788 * 107.49222 * 8 7 5 10 10 C 1.50701 * 117.51900 * 252.51694 * 8 7 5 11 11 O 1.21278 * 120.00254 * 68.62864 * 10 8 7 12 12 N 1.34782 * 119.99870 * 248.63484 * 10 8 7 13 13 C 1.46929 * 120.63178 * 359.97438 * 12 10 8 14 14 C 1.53198 * 108.77261 * 233.59022 * 13 12 10 15 15 C 1.53035 * 109.31355 * 305.36294 * 14 13 12 16 16 C 1.53041 * 109.53699 * 61.36856 * 15 14 13 17 17 H 1.08991 * 109.50153 * 58.58644 * 16 15 14 18 18 C 1.50706 * 109.49775 * 178.65265 * 16 15 14 19 19 H 1.07996 * 119.99774 * 119.99677 * 18 16 15 20 20 C 1.37880 * 119.99639 * 299.99743 * 18 16 15 21 21 N 1.31516 * 120.00010 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 119.99885 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46918 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47099 * 119.99964 * 22 20 18 25 25 H 1.48498 * 109.47411 * 240.00272 * 22 20 18 26 26 C 1.46920 * 120.62969 * 179.72084 * 12 10 8 27 27 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 28 28 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 29 29 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 34 34 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 35 35 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 36 36 H 1.09001 * 117.49810 * 359.97438 * 7 5 4 37 37 H 1.08995 * 117.50134 * 145.01745 * 7 5 4 38 38 H 1.08999 * 109.58155 * 353.37582 * 13 12 10 39 39 H 1.08996 * 109.58625 * 113.80116 * 13 12 10 40 40 H 1.09000 * 109.49971 * 65.31601 * 14 13 12 41 41 H 1.08998 * 109.49539 * 185.37862 * 14 13 12 42 42 H 1.08998 * 109.46046 * 181.38837 * 15 14 13 43 43 H 1.08997 * 109.45891 * 301.34676 * 15 14 13 44 44 H 0.96998 * 119.99521 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58375 * 246.19872 * 26 12 10 46 46 H 1.09006 * 109.59095 * 6.62028 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 4.0718 -0.0353 0.6424 7 6 4.1696 -2.2345 1.1156 8 6 4.2801 -1.4195 2.4057 9 1 3.6645 -1.7286 3.2505 10 6 5.6319 -0.8547 2.7589 11 8 6.1127 0.0330 2.0868 12 7 6.3066 -1.3361 3.8217 13 6 5.7371 -2.4110 4.6458 14 6 5.7337 -1.9605 6.1101 15 6 7.1491 -1.5416 6.5140 16 6 7.6012 -0.3640 5.6475 17 1 6.9062 0.4664 5.7708 18 6 8.9820 0.0691 6.0682 19 1 9.7960 0.0418 5.3590 20 6 9.2060 0.5003 7.3586 21 7 8.2148 0.5330 8.2223 22 14 10.9176 1.0364 7.8803 23 1 11.8491 0.9056 6.7311 24 1 10.8783 2.4523 8.3263 25 1 11.3861 0.1782 8.9980 26 6 7.6281 -0.7998 4.1750 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.7515 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 3.4813 -3.0796 1.1120 37 1 5.0748 -2.3624 0.5220 38 1 4.7161 -2.6160 4.3241 39 1 6.3429 -3.3111 4.5418 40 1 5.0562 -1.1151 6.2290 41 1 5.4028 -2.7838 6.7431 42 1 7.1544 -1.2440 7.5626 43 1 7.8306 -2.3802 6.3714 44 1 8.3723 0.8367 9.1300 45 1 8.3852 -1.5711 4.0332 46 1 7.8551 0.0585 3.5426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397756434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:17 Heat of formation + Delta-G solvation = -42.162941 kcal Electronic energy + Delta-G solvation = -22291.234719 eV Core-core repulsion = 19180.309672 eV Total energy + Delta-G solvation = -3110.925048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.94103 -37.91819 -36.57155 -34.97629 -33.43982 -31.29950 -30.24049 -27.75803 -27.27627 -25.43171 -24.92229 -22.92039 -21.68757 -21.33116 -19.93553 -19.48507 -18.21168 -17.03122 -16.24463 -15.56505 -15.35041 -14.82699 -14.53906 -14.17354 -14.05398 -13.64255 -13.42830 -13.10755 -12.79880 -12.74570 -12.60058 -12.31360 -12.04849 -11.98484 -11.94106 -11.73910 -11.15590 -11.00951 -10.95148 -10.83673 -10.72731 -10.68366 -10.33745 -10.17696 -9.98666 -9.85781 -9.79006 -9.46714 -9.22570 -8.80603 -8.38734 -7.86516 -6.01898 -4.08898 2.88965 3.28734 3.36811 3.40779 3.51746 3.92496 4.42229 4.49555 4.69568 4.75295 4.89299 4.96037 5.04876 5.19135 5.28181 5.31356 5.45634 5.48214 5.56507 5.62520 5.63787 5.66882 5.72963 5.75649 5.81386 5.89068 5.98304 6.03712 6.13181 6.13864 6.26310 6.34162 6.39982 6.41729 6.49648 6.67081 6.81959 6.99350 7.18248 7.34353 7.69526 7.92669 8.05099 8.08045 8.38096 8.70185 8.95117 9.55975 11.03596 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.003447 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.659443 B = 8120.463574 C = 8365.858026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.121 4.121 6 H 0.119 0.881 7 C -0.151 4.151 8 C -0.187 4.187 9 H 0.121 0.879 10 C 0.537 3.463 11 O -0.553 6.553 12 N -0.599 5.599 13 C 0.110 3.890 14 C -0.136 4.136 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.513 4.513 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.116 3.884 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -6.489 -11.821 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.122 4.122 5 C -0.139 4.139 6 H 0.137 0.863 7 C -0.188 4.188 8 C -0.208 4.208 9 H 0.139 0.861 10 C 0.325 3.675 11 O -0.433 6.433 12 N -0.330 5.330 13 C -0.013 4.013 14 C -0.174 4.174 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.004 4.004 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.664 -5.975 -11.971 19.124 hybrid contribution 0.925 0.169 0.653 1.145 sum -12.739 -5.806 -11.318 18.003 Atomic orbital electron populations 1.21847 0.95402 1.01504 1.01720 1.21063 0.95284 0.96574 0.98263 1.21918 1.01817 0.95671 1.01477 1.21277 0.92216 1.00513 0.98225 1.22480 0.94842 0.97244 0.99364 0.86279 1.23050 1.03204 0.94802 0.97790 1.22351 0.97283 1.07084 0.94035 0.86078 1.19554 0.85398 0.82178 0.80388 1.90641 1.69678 1.31037 1.51901 1.48215 1.20288 1.37116 1.27386 1.21760 0.97898 0.89593 0.92053 1.22016 1.01218 1.00288 0.93877 1.21628 0.91103 0.97826 1.04494 1.19044 0.97098 0.94005 0.87719 0.95264 1.21127 0.94417 1.43269 0.96358 0.92437 1.24943 0.96915 0.95393 0.96626 1.69884 1.30800 1.47338 1.04770 0.86522 0.84578 0.78276 0.78551 1.19725 1.21026 1.21042 1.22084 0.80563 0.98146 0.99650 0.92694 0.92809 0.92848 0.91135 0.92675 0.91958 0.93029 0.91348 0.91756 0.88176 0.88537 0.90961 0.92021 0.92414 0.92498 0.88629 0.94600 0.93045 0.92743 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.82 2.92 -90.62 -0.26 -1.09 16 3 C -0.15 -1.46 9.01 37.16 0.33 -1.13 16 4 C -0.08 -0.82 4.96 -26.73 -0.13 -0.95 16 5 C -0.12 -1.46 5.04 -90.62 -0.46 -1.92 16 6 H 0.12 1.67 5.91 -51.93 -0.31 1.36 16 7 C -0.15 -1.69 9.88 -26.73 -0.26 -1.96 16 8 C -0.19 -2.56 4.85 -91.78 -0.44 -3.00 16 9 H 0.12 1.47 6.56 -51.93 -0.34 1.13 16 10 C 0.54 10.02 7.48 -10.98 -0.08 9.94 16 11 O -0.55 -12.26 15.67 5.56 0.09 -12.17 16 12 N -0.60 -11.39 2.97 -172.52 -0.51 -11.90 16 13 C 0.11 1.74 6.34 -3.71 -0.02 1.71 16 14 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 15 C -0.11 -2.54 4.96 -26.69 -0.13 -2.67 16 16 C 0.04 1.01 2.26 -91.44 -0.21 0.80 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.51 -14.03 8.57 -34.44 -0.29 -14.32 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.08 11.31 55.43 0.63 -24.46 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.12 2.58 5.68 -3.51 -0.02 2.56 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 6.41 -51.93 -0.33 0.35 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.92 5.51 -51.93 -0.29 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -29.95 356.70 -9.57 -39.53 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.23 Total: 1.18 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.90 Total: -13.76 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.12 Total: -36.36 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.95 -9.57 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.634 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds