Wall clock time and date at job start Tue Mar 31 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09003 * 115.54795 * 29.32827 * 5 4 2 7 7 C 1.53000 * 117.50165 * 243.62462 * 5 4 2 8 8 C 1.52994 * 59.99907 * 252.50793 * 7 5 4 9 9 H 1.09002 * 117.49788 * 107.49222 * 8 7 5 10 10 C 1.50701 * 117.51900 * 252.51694 * 8 7 5 11 11 O 1.21278 * 120.00254 * 68.62864 * 10 8 7 12 12 N 1.34782 * 119.99870 * 248.63484 * 10 8 7 13 13 C 1.46929 * 120.63178 * 359.97438 * 12 10 8 14 14 C 1.53198 * 108.77261 * 233.59022 * 13 12 10 15 15 C 1.53035 * 109.31355 * 305.36294 * 14 13 12 16 16 C 1.53041 * 109.53699 * 61.36856 * 15 14 13 17 17 H 1.08991 * 109.50153 * 58.58644 * 16 15 14 18 18 C 1.50706 * 109.49775 * 178.65265 * 16 15 14 19 19 H 1.07996 * 119.99774 * 119.99677 * 18 16 15 20 20 C 1.37880 * 119.99639 * 299.99743 * 18 16 15 21 21 N 1.31516 * 120.00010 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 119.99885 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46918 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47099 * 119.99964 * 22 20 18 25 25 H 1.48498 * 109.47411 * 240.00272 * 22 20 18 26 26 C 1.46920 * 120.62969 * 179.72084 * 12 10 8 27 27 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 28 28 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 29 29 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 34 34 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 35 35 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 36 36 H 1.09001 * 117.49810 * 359.97438 * 7 5 4 37 37 H 1.08995 * 117.50134 * 145.01745 * 7 5 4 38 38 H 1.08999 * 109.58155 * 353.37582 * 13 12 10 39 39 H 1.08996 * 109.58625 * 113.80116 * 13 12 10 40 40 H 1.09000 * 109.49971 * 65.31601 * 14 13 12 41 41 H 1.08998 * 109.49539 * 185.37862 * 14 13 12 42 42 H 1.08998 * 109.46046 * 181.38837 * 15 14 13 43 43 H 1.08997 * 109.45891 * 301.34676 * 15 14 13 44 44 H 0.96998 * 119.99521 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58375 * 246.19872 * 26 12 10 46 46 H 1.09006 * 109.59095 * 6.62028 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 4.0718 -0.0353 0.6424 7 6 4.1696 -2.2345 1.1156 8 6 4.2801 -1.4195 2.4057 9 1 3.6645 -1.7286 3.2505 10 6 5.6319 -0.8547 2.7589 11 8 6.1127 0.0330 2.0868 12 7 6.3066 -1.3361 3.8217 13 6 5.7371 -2.4110 4.6458 14 6 5.7337 -1.9605 6.1101 15 6 7.1491 -1.5416 6.5140 16 6 7.6012 -0.3640 5.6475 17 1 6.9062 0.4664 5.7708 18 6 8.9820 0.0691 6.0682 19 1 9.7960 0.0418 5.3590 20 6 9.2060 0.5003 7.3586 21 7 8.2148 0.5330 8.2223 22 14 10.9176 1.0364 7.8803 23 1 11.8491 0.9056 6.7311 24 1 10.8783 2.4523 8.3263 25 1 11.3861 0.1782 8.9980 26 6 7.6281 -0.7998 4.1750 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.7515 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 3.4813 -3.0796 1.1120 37 1 5.0748 -2.3624 0.5220 38 1 4.7161 -2.6160 4.3241 39 1 6.3429 -3.3111 4.5418 40 1 5.0562 -1.1151 6.2290 41 1 5.4028 -2.7838 6.7431 42 1 7.1544 -1.2440 7.5626 43 1 7.8306 -2.3802 6.3714 44 1 8.3723 0.8367 9.1300 45 1 8.3852 -1.5711 4.0332 46 1 7.8551 0.0585 3.5426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397756434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:16 Heat of formation + Delta-G solvation = -57.556982 kcal Electronic energy + Delta-G solvation = -22291.902255 eV Core-core repulsion = 19180.309672 eV Total energy + Delta-G solvation = -3111.592584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33065 -39.11328 -37.99342 -35.88482 -35.33912 -33.03324 -32.01220 -28.61764 -27.99327 -27.21266 -26.48500 -24.29473 -23.30794 -22.26212 -21.13059 -20.69911 -19.65888 -18.60931 -18.03997 -16.96745 -16.71595 -16.17632 -15.96589 -15.34001 -15.16535 -15.04768 -14.74436 -14.64429 -14.33965 -13.96052 -13.70375 -13.59649 -13.43491 -13.06577 -12.91675 -12.90218 -12.69741 -12.58344 -12.49004 -11.98274 -11.96491 -11.86840 -11.65255 -11.60661 -11.44996 -11.30078 -11.08878 -10.90717 -10.80319 -10.63854 -10.44191 -9.49531 -8.12776 -6.28249 1.38141 1.40166 1.51230 1.53697 2.09067 2.42022 2.88739 3.13424 3.48116 3.74607 3.84450 4.01789 4.11626 4.15923 4.22774 4.26221 4.33306 4.36056 4.50165 4.52953 4.60665 4.79168 4.79548 4.84505 4.86029 4.87213 4.94227 4.97838 4.98426 5.04281 5.10572 5.13733 5.18347 5.27618 5.30224 5.43481 5.47128 5.53972 5.56434 5.57856 5.59558 5.90986 6.11474 6.32462 6.57418 6.81223 7.23127 7.39933 8.91051 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.003447 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.659443 B = 8120.463574 C = 8365.858026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.079 4.079 5 C -0.122 4.122 6 H 0.091 0.909 7 C -0.126 4.126 8 C -0.197 4.197 9 H 0.147 0.853 10 C 0.527 3.473 11 O -0.601 6.601 12 N -0.604 5.604 13 C 0.111 3.889 14 C -0.128 4.128 15 C -0.106 4.106 16 C 0.042 3.958 17 H -0.016 1.016 18 C -0.539 4.539 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.913 5.913 22 Si 0.956 3.044 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.129 3.871 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.061 0.939 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 -8.910 -12.337 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.116 4.116 5 C -0.141 4.141 6 H 0.109 0.891 7 C -0.163 4.163 8 C -0.218 4.218 9 H 0.165 0.835 10 C 0.318 3.682 11 O -0.484 6.484 12 N -0.335 5.335 13 C -0.010 4.010 14 C -0.166 4.166 15 C -0.144 4.144 16 C 0.023 3.977 17 H 0.002 0.998 18 C -0.577 4.577 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.552 5.552 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.157 0.843 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.442 -8.423 -12.483 21.569 hybrid contribution 1.492 0.994 0.791 1.959 sum -13.950 -7.429 -11.692 19.660 Atomic orbital electron populations 1.21814 0.94018 1.02385 1.01905 1.21059 0.96340 0.95488 0.98145 1.21929 1.00451 0.96954 1.01696 1.21280 0.90131 1.01914 0.98248 1.22510 0.96270 0.97424 0.97911 0.89101 1.23200 1.03150 0.95237 0.94691 1.22329 0.94481 1.09068 0.95919 0.83546 1.20517 0.86896 0.81380 0.79452 1.90614 1.71183 1.33154 1.53405 1.48309 1.19184 1.37821 1.28161 1.22010 1.00530 0.88749 0.89753 1.21928 0.97438 1.00989 0.96264 1.21427 0.94433 0.96641 1.01937 1.18938 0.95010 0.93639 0.90102 0.99770 1.21470 0.95472 1.44069 0.96707 0.93076 1.25706 1.00630 0.95350 0.96604 1.70016 1.32553 1.47626 1.05000 0.85532 0.80149 0.77846 0.78285 1.19372 1.20831 1.19972 1.21631 0.83078 0.97462 0.97192 0.92877 0.92339 0.91591 0.90784 0.93202 0.94072 0.92096 0.91903 0.89265 0.84254 0.89646 0.86723 0.90081 0.93837 0.89027 0.91878 0.94353 0.92889 0.92064 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 71.98 0.66 -1.11 16 2 C -0.09 -1.44 2.92 -10.79 -0.03 -1.47 16 3 C -0.15 -2.91 9.01 71.98 0.65 -2.26 16 4 C -0.08 -1.29 4.96 30.59 0.15 -1.14 16 5 C -0.12 -2.76 5.04 -10.80 -0.05 -2.81 16 6 H 0.09 2.61 5.91 -2.39 -0.01 2.60 16 7 C -0.13 -2.39 9.88 30.59 0.30 -2.09 16 8 C -0.20 -4.94 4.85 -11.54 -0.06 -5.00 16 9 H 0.15 2.92 6.56 -2.39 -0.02 2.90 16 10 C 0.53 19.66 7.48 87.66 0.66 20.32 16 11 O -0.60 -27.83 15.67 -3.02 -0.05 -27.88 16 12 N -0.60 -22.80 2.97 -818.11 -2.43 -25.22 16 13 C 0.11 3.19 6.34 86.36 0.55 3.73 16 14 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 15 C -0.11 -4.85 4.96 30.62 0.15 -4.70 16 16 C 0.04 2.20 2.26 -11.33 -0.03 2.17 16 17 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 18 C -0.54 -30.58 8.57 25.60 0.22 -30.36 16 19 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 20 C 0.02 0.91 5.30 84.66 0.45 1.36 16 21 N -0.91 -52.91 11.31 21.45 0.24 -52.66 16 22 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.13 5.92 5.68 86.50 0.49 6.42 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.94 6.41 -2.39 -0.02 0.93 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.06 7.88 -2.39 -0.02 1.05 16 36 H 0.14 1.62 8.03 -2.39 -0.02 1.61 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.38 5.51 -2.39 -0.01 2.36 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.05 2.50 7.00 -2.38 -0.02 2.49 16 Total: -1.00 -69.73 356.70 5.02 -64.71 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.93 Total: 15.90 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.30 Total: -21.14 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -2.18 Total: -77.89 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.73 5.02 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397756434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.151 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds