Wall clock time and date at job start Tue Mar 31 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.50708 * 109.46817 * 119.99519 * 2 1 3 5 5 O 1.21276 * 119.99902 * 235.94512 * 4 2 1 6 6 N 1.34773 * 119.99977 * 55.94519 * 4 2 1 7 7 C 1.46931 * 120.62725 * 5.30659 * 6 4 2 8 8 C 1.53194 * 108.77503 * 126.36919 * 7 6 4 9 9 C 1.53049 * 109.31558 * 54.63134 * 8 7 6 10 10 C 1.53040 * 109.53372 * 298.63629 * 9 8 7 11 11 H 1.08993 * 109.50220 * 301.41054 * 10 9 8 12 12 C 1.50707 * 109.49309 * 181.34563 * 10 9 8 13 13 H 1.08000 * 119.99536 * 239.99885 * 12 10 9 14 14 C 1.37870 * 119.99836 * 60.00181 * 12 10 9 15 15 N 1.31519 * 120.00179 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99984 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47038 * 90.00136 * 16 14 12 18 18 H 1.48497 * 109.47582 * 210.00051 * 16 14 12 19 19 H 1.48498 * 109.47179 * 330.00347 * 16 14 12 20 20 C 1.46919 * 120.63462 * 185.02441 * 6 4 2 21 21 C 1.53000 * 109.47206 * 239.99618 * 2 1 3 22 22 C 1.53779 * 113.61112 * 151.47973 * 21 2 1 23 23 C 1.53958 * 87.01886 * 220.04801 * 22 21 2 24 24 C 1.53774 * 113.61151 * 53.87351 * 21 2 1 25 25 H 1.09002 * 109.46767 * 53.63314 * 1 2 3 26 26 H 1.08994 * 109.46964 * 293.63193 * 1 2 3 27 27 H 1.08998 * 109.46655 * 173.62921 * 1 2 3 28 28 H 1.09005 * 109.47505 * 52.74482 * 3 2 1 29 29 H 1.08996 * 109.47581 * 172.74925 * 3 2 1 30 30 H 1.09007 * 109.46844 * 292.75278 * 3 2 1 31 31 H 1.08998 * 109.58417 * 246.15010 * 7 6 4 32 32 H 1.08993 * 109.59207 * 6.43798 * 7 6 4 33 33 H 1.08996 * 109.49948 * 174.58192 * 8 7 6 34 34 H 1.08996 * 109.49742 * 294.64641 * 8 7 6 35 35 H 1.08999 * 109.45407 * 58.65572 * 9 8 7 36 36 H 1.08992 * 109.45991 * 178.61346 * 9 8 7 37 37 H 0.96998 * 119.99894 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58387 * 353.41763 * 20 6 4 39 39 H 1.08996 * 109.59247 * 113.84210 * 20 6 4 40 40 H 1.08998 * 112.84943 * 282.66918 * 21 2 1 41 41 H 1.09001 * 113.61592 * 334.56505 * 22 21 2 42 42 H 1.09005 * 113.61312 * 105.47174 * 22 21 2 43 43 H 1.08998 * 113.53675 * 270.81216 * 23 22 21 44 44 H 1.08995 * 113.66439 * 139.93706 * 23 22 21 45 45 H 1.09002 * 113.61499 * 254.52339 * 24 21 2 46 46 H 1.08999 * 113.62247 * 25.34775 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7890 -0.1445 1.9910 6 7 1.6407 -1.9744 1.4861 7 6 0.8188 -2.7135 0.5180 8 6 1.5055 -4.0465 0.2045 9 6 1.7686 -4.7999 1.5105 10 6 2.7011 -3.9735 2.3991 11 1 3.6355 -3.7856 1.8704 12 6 2.9860 -4.7308 3.6705 13 1 2.7169 -4.3035 4.6252 14 6 3.5902 -5.9688 3.6149 15 7 3.9174 -6.4891 2.4522 16 14 3.9440 -6.9071 5.1908 17 1 2.7802 -7.7659 5.5275 18 1 5.1475 -7.7563 5.0019 19 1 4.1855 -5.9452 6.2961 20 6 2.0326 -2.6416 2.7350 21 6 2.0401 -0.7213 -1.2492 22 6 3.4127 -0.2227 -1.7311 23 6 2.8648 -0.3471 -3.1645 24 6 1.4622 -0.1646 -2.5610 25 1 -0.3633 0.6094 -0.8275 26 1 -0.3633 0.4119 0.9414 27 1 -0.3632 -1.0213 -0.1140 28 1 1.5747 1.9925 0.8180 29 1 3.1223 1.4453 0.1297 30 1 1.7865 1.9175 -0.9478 31 1 -0.1668 -2.9015 0.9438 32 1 0.7165 -2.1289 -0.3961 33 1 0.8602 -4.6460 -0.4376 34 1 2.4509 -3.8580 -0.3041 35 1 0.8249 -4.9664 2.0300 36 1 2.2348 -5.7597 1.2884 37 1 4.3422 -7.3603 2.4130 38 1 2.7330 -2.0106 3.2821 39 1 1.1480 -2.8235 3.3453 40 1 1.9735 -1.8063 -1.1683 41 1 3.6331 0.8030 -1.4354 42 1 4.2287 -0.9118 -1.5132 43 1 3.0249 -1.3298 -3.6080 44 1 3.1674 0.4689 -3.8208 45 1 0.7059 -0.8069 -3.0122 46 1 1.1471 0.8766 -2.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397765692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:10 Heat of formation + Delta-G solvation = -18.686524 kcal Electronic energy + Delta-G solvation = -23796.673481 eV Core-core repulsion = 20686.766447 eV Total energy + Delta-G solvation = -3109.907034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86025 -38.42177 -36.76434 -34.10317 -33.16259 -31.26797 -30.21730 -27.58942 -25.94850 -25.24699 -24.98956 -24.78632 -22.03926 -21.66137 -19.58976 -18.92815 -18.10468 -16.76454 -16.25643 -15.80298 -15.28512 -14.98556 -14.63595 -13.97771 -13.81992 -13.43956 -13.23146 -13.00637 -12.82175 -12.72628 -12.42337 -12.20882 -11.97867 -11.92867 -11.73684 -11.67558 -11.22034 -11.07741 -10.96972 -10.78060 -10.71633 -10.36613 -10.36537 -10.17507 -10.04976 -9.88197 -9.69820 -9.40320 -9.04255 -8.75947 -8.37245 -7.83102 -6.01069 -4.08106 3.12763 3.29893 3.36796 3.40630 3.61452 4.42863 4.49749 4.55667 4.65518 4.82218 4.91567 5.11599 5.24402 5.27861 5.30568 5.39883 5.58422 5.61124 5.65255 5.69249 5.73966 5.77763 5.82110 5.85600 5.97422 6.01793 6.07617 6.14014 6.21334 6.26268 6.32670 6.34396 6.44156 6.50863 6.54041 6.69048 6.85042 7.03284 7.19069 7.35489 7.70087 7.94339 8.08245 8.10031 8.39179 8.74104 8.95846 9.56748 11.04397 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.004855 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.430839 B = 5765.493558 C = 6052.192466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.519 3.481 5 O -0.551 6.551 6 N -0.600 5.600 7 C 0.090 3.910 8 C -0.136 4.136 9 C -0.111 4.111 10 C 0.040 3.960 11 H 0.028 0.972 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.114 4.114 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.132 4.132 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 10.898 -11.388 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.184 4.184 4 C 0.307 3.693 5 O -0.430 6.430 6 N -0.331 5.331 7 C -0.033 4.033 8 C -0.175 4.175 9 C -0.149 4.149 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.004 4.004 21 C -0.132 4.132 22 C -0.180 4.180 23 C -0.179 4.179 24 C -0.169 4.169 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.042 11.029 -11.037 17.119 hybrid contribution 0.162 -0.793 0.859 1.180 sum -6.880 10.237 -10.179 15.992 Atomic orbital electron populations 1.22137 0.93006 1.03311 1.02279 1.20657 0.96733 0.96598 0.93475 1.21744 1.02246 0.93325 1.01073 1.20412 0.80574 0.81616 0.86721 1.90635 1.35887 1.66376 1.50080 1.48196 1.51471 1.12627 1.20824 1.22305 0.93987 0.94172 0.92831 1.22031 0.99725 0.95254 1.00446 1.21618 0.98846 1.01886 0.92598 1.18878 0.94165 0.89185 0.95657 0.95349 1.21083 1.39257 1.02474 0.92352 0.92538 1.24929 0.95318 0.97462 0.96077 1.69874 1.41752 1.17657 1.23542 0.86587 0.77765 0.79853 0.83768 1.20702 1.21247 1.19863 1.21879 0.99114 0.95796 0.83661 1.22963 0.97118 1.00833 0.92330 1.23162 0.96764 1.02407 0.95673 1.22818 0.96680 1.01820 0.96580 1.22945 0.96782 1.01337 0.95855 0.91734 0.92386 0.90898 0.92506 0.91331 0.92321 0.92252 0.88885 0.92552 0.92434 0.94658 0.88674 0.93012 0.90434 0.92903 0.87415 0.89181 0.91458 0.90290 0.91689 0.91501 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.69 37.16 0.29 -1.39 16 2 C -0.07 -0.96 0.46 -155.65 -0.07 -1.03 16 3 C -0.13 -1.59 6.54 37.16 0.24 -1.34 16 4 C 0.52 9.55 6.48 -10.98 -0.07 9.48 16 5 O -0.55 -12.22 15.26 5.56 0.08 -12.14 16 6 N -0.60 -11.22 2.97 -173.03 -0.51 -11.73 16 7 C 0.09 1.39 3.96 -3.71 -0.01 1.38 16 8 C -0.14 -2.42 5.87 -26.61 -0.16 -2.58 16 9 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 10 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.51 -14.02 8.57 -34.44 -0.29 -14.32 16 13 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.12 2.58 5.64 -3.93 -0.02 2.55 16 21 C -0.11 -1.39 2.35 -89.81 -0.21 -1.60 16 22 C -0.14 -1.72 7.26 -25.83 -0.19 -1.91 16 23 C -0.14 -1.38 8.09 -25.82 -0.21 -1.58 16 24 C -0.13 -1.23 6.45 -25.92 -0.17 -1.40 16 25 H 0.06 0.58 7.34 -51.93 -0.38 0.20 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.78 4.87 -51.93 -0.25 0.53 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.96 6.39 -51.93 -0.33 0.63 16 30 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 31 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.09 1.20 2.69 -51.93 -0.14 1.06 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.07 7.86 -51.93 -0.41 0.67 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.08 1.86 7.00 -51.93 -0.36 1.49 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.11 1.44 4.88 -51.93 -0.25 1.19 16 41 H 0.09 1.05 5.54 -51.93 -0.29 0.76 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.70 6.45 -51.93 -0.33 0.37 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -29.96 333.42 -8.70 -38.66 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.60 Total: 2.37 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.31 Total: -13.94 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.11 Total: -36.20 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.96 -8.70 -38.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.974 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds