Wall clock time and date at job start Tue Mar 31 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.50708 * 109.46817 * 119.99519 * 2 1 3 5 5 O 1.21276 * 119.99902 * 235.94512 * 4 2 1 6 6 N 1.34773 * 119.99977 * 55.94519 * 4 2 1 7 7 C 1.46931 * 120.62725 * 5.30659 * 6 4 2 8 8 C 1.53194 * 108.77503 * 126.36919 * 7 6 4 9 9 C 1.53049 * 109.31558 * 54.63134 * 8 7 6 10 10 C 1.53040 * 109.53372 * 298.63629 * 9 8 7 11 11 H 1.08993 * 109.50220 * 301.41054 * 10 9 8 12 12 C 1.50707 * 109.49309 * 181.34563 * 10 9 8 13 13 H 1.08000 * 119.99536 * 239.99885 * 12 10 9 14 14 C 1.37870 * 119.99836 * 60.00181 * 12 10 9 15 15 N 1.31519 * 120.00179 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99984 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47038 * 90.00136 * 16 14 12 18 18 H 1.48497 * 109.47582 * 210.00051 * 16 14 12 19 19 H 1.48498 * 109.47179 * 330.00347 * 16 14 12 20 20 C 1.46919 * 120.63462 * 185.02441 * 6 4 2 21 21 C 1.53000 * 109.47206 * 239.99618 * 2 1 3 22 22 C 1.53779 * 113.61112 * 151.47973 * 21 2 1 23 23 C 1.53958 * 87.01886 * 220.04801 * 22 21 2 24 24 C 1.53774 * 113.61151 * 53.87351 * 21 2 1 25 25 H 1.09002 * 109.46767 * 53.63314 * 1 2 3 26 26 H 1.08994 * 109.46964 * 293.63193 * 1 2 3 27 27 H 1.08998 * 109.46655 * 173.62921 * 1 2 3 28 28 H 1.09005 * 109.47505 * 52.74482 * 3 2 1 29 29 H 1.08996 * 109.47581 * 172.74925 * 3 2 1 30 30 H 1.09007 * 109.46844 * 292.75278 * 3 2 1 31 31 H 1.08998 * 109.58417 * 246.15010 * 7 6 4 32 32 H 1.08993 * 109.59207 * 6.43798 * 7 6 4 33 33 H 1.08996 * 109.49948 * 174.58192 * 8 7 6 34 34 H 1.08996 * 109.49742 * 294.64641 * 8 7 6 35 35 H 1.08999 * 109.45407 * 58.65572 * 9 8 7 36 36 H 1.08992 * 109.45991 * 178.61346 * 9 8 7 37 37 H 0.96998 * 119.99894 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58387 * 353.41763 * 20 6 4 39 39 H 1.08996 * 109.59247 * 113.84210 * 20 6 4 40 40 H 1.08998 * 112.84943 * 282.66918 * 21 2 1 41 41 H 1.09001 * 113.61592 * 334.56505 * 22 21 2 42 42 H 1.09005 * 113.61312 * 105.47174 * 22 21 2 43 43 H 1.08998 * 113.53675 * 270.81216 * 23 22 21 44 44 H 1.08995 * 113.66439 * 139.93706 * 23 22 21 45 45 H 1.09002 * 113.61499 * 254.52339 * 24 21 2 46 46 H 1.08999 * 113.62247 * 25.34775 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7890 -0.1445 1.9910 6 7 1.6407 -1.9744 1.4861 7 6 0.8188 -2.7135 0.5180 8 6 1.5055 -4.0465 0.2045 9 6 1.7686 -4.7999 1.5105 10 6 2.7011 -3.9735 2.3991 11 1 3.6355 -3.7856 1.8704 12 6 2.9860 -4.7308 3.6705 13 1 2.7169 -4.3035 4.6252 14 6 3.5902 -5.9688 3.6149 15 7 3.9174 -6.4891 2.4522 16 14 3.9440 -6.9071 5.1908 17 1 2.7802 -7.7659 5.5275 18 1 5.1475 -7.7563 5.0019 19 1 4.1855 -5.9452 6.2961 20 6 2.0326 -2.6416 2.7350 21 6 2.0401 -0.7213 -1.2492 22 6 3.4127 -0.2227 -1.7311 23 6 2.8648 -0.3471 -3.1645 24 6 1.4622 -0.1646 -2.5610 25 1 -0.3633 0.6094 -0.8275 26 1 -0.3633 0.4119 0.9414 27 1 -0.3632 -1.0213 -0.1140 28 1 1.5747 1.9925 0.8180 29 1 3.1223 1.4453 0.1297 30 1 1.7865 1.9175 -0.9478 31 1 -0.1668 -2.9015 0.9438 32 1 0.7165 -2.1289 -0.3961 33 1 0.8602 -4.6460 -0.4376 34 1 2.4509 -3.8580 -0.3041 35 1 0.8249 -4.9664 2.0300 36 1 2.2348 -5.7597 1.2884 37 1 4.3422 -7.3603 2.4130 38 1 2.7330 -2.0106 3.2821 39 1 1.1480 -2.8235 3.3453 40 1 1.9735 -1.8063 -1.1683 41 1 3.6331 0.8030 -1.4354 42 1 4.2287 -0.9118 -1.5132 43 1 3.0249 -1.3298 -3.6080 44 1 3.1674 0.4689 -3.8208 45 1 0.7059 -0.8069 -3.0122 46 1 1.1471 0.8766 -2.4923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397765692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:09 Heat of formation + Delta-G solvation = -35.341136 kcal Electronic energy + Delta-G solvation = -23797.395679 eV Core-core repulsion = 20686.766447 eV Total energy + Delta-G solvation = -3110.629232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08589 -39.64765 -38.39487 -35.60011 -34.67285 -32.96059 -31.98685 -28.59498 -27.30037 -26.65255 -26.25441 -26.00686 -23.44030 -23.22755 -21.14081 -20.05518 -19.48303 -18.48518 -17.75044 -17.09201 -16.78003 -16.40252 -16.04951 -15.50204 -15.18905 -14.95388 -14.73762 -14.45073 -14.06812 -13.91612 -13.75247 -13.55083 -13.28136 -13.13991 -12.91633 -12.87714 -12.60675 -12.56657 -12.48642 -12.21326 -12.05510 -11.90118 -11.80072 -11.59527 -11.38808 -11.25350 -11.06454 -10.88984 -10.83849 -10.47985 -10.28253 -9.46841 -8.12676 -6.28427 1.38813 1.40045 1.50302 1.69220 2.15013 2.42348 3.13459 3.40542 3.64293 3.71726 3.92040 4.02243 4.06718 4.17551 4.21028 4.26467 4.30727 4.41170 4.51802 4.58523 4.75507 4.75552 4.82607 4.84310 4.87770 4.91142 4.94077 4.96238 5.02197 5.08228 5.13143 5.15334 5.23019 5.26201 5.32392 5.37531 5.43103 5.47996 5.56939 5.58752 5.68287 5.90813 6.11965 6.32314 6.60948 6.81025 7.26609 7.39901 8.90973 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.004855 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.430839 B = 5765.493558 C = 6052.192466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.124 4.124 4 C 0.508 3.492 5 O -0.600 6.600 6 N -0.604 5.604 7 C 0.092 3.908 8 C -0.129 4.129 9 C -0.104 4.104 10 C 0.043 3.957 11 H -0.019 1.019 12 C -0.539 4.539 13 H 0.051 0.949 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.956 3.044 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.128 3.872 21 C -0.122 4.122 22 C -0.157 4.157 23 C -0.134 4.134 24 C -0.113 4.113 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 11.648 -13.419 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.181 4.181 4 C 0.298 3.702 5 O -0.482 6.482 6 N -0.334 5.334 7 C -0.029 4.029 8 C -0.167 4.167 9 C -0.143 4.143 10 C 0.023 3.977 11 H -0.001 1.001 12 C -0.578 4.578 13 H 0.069 0.931 14 C -0.182 4.182 15 N -0.552 5.552 16 Si 0.781 3.219 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.006 3.994 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.171 4.171 24 C -0.150 4.150 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.612 11.776 -13.094 20.063 hybrid contribution 1.054 -1.022 1.521 2.114 sum -8.558 10.753 -11.574 17.967 Atomic orbital electron populations 1.22166 0.90428 1.04469 1.03396 1.20721 0.98597 0.96311 0.90958 1.21753 1.00676 0.92955 1.02742 1.21551 0.79531 0.81269 0.87831 1.90605 1.38010 1.67423 1.52130 1.48278 1.51810 1.13123 1.20214 1.22571 0.93731 0.92972 0.93670 1.21940 1.00146 0.96497 0.98071 1.21409 0.97723 1.00487 0.94643 1.18772 0.93028 0.90931 0.94930 1.00059 1.21434 1.40000 1.03224 0.93104 0.93100 1.25692 0.95015 0.98254 0.99197 1.70012 1.41981 1.17919 1.25334 0.85589 0.77910 0.78482 0.79882 1.19461 1.20844 1.19781 1.21438 0.98427 0.94083 0.85475 1.23005 0.97737 1.00071 0.93232 1.23256 0.96088 1.01806 0.98247 1.22793 0.96775 1.02515 0.95014 1.22925 0.96749 1.02554 0.92778 0.88284 0.93146 0.90188 0.93158 0.93668 0.88706 0.90132 0.85266 0.89021 0.94002 0.94345 0.91892 0.92901 0.93432 0.92130 0.88697 0.88957 0.94446 0.90325 0.90054 0.89444 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 7.69 71.98 0.55 -2.14 16 2 C -0.06 -1.56 0.46 -52.92 -0.02 -1.59 16 3 C -0.12 -2.90 6.54 71.98 0.47 -2.43 16 4 C 0.51 18.94 6.48 87.66 0.57 19.51 16 5 O -0.60 -27.95 15.26 -3.02 -0.05 -28.00 16 6 N -0.60 -22.77 2.97 -819.74 -2.43 -25.20 16 7 C 0.09 2.66 3.96 86.36 0.34 3.00 16 8 C -0.13 -4.44 5.87 30.68 0.18 -4.26 16 9 C -0.10 -4.80 4.96 30.62 0.15 -4.64 16 10 C 0.04 2.23 2.24 -11.60 -0.03 2.20 16 11 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 12 C -0.54 -30.72 8.57 25.60 0.22 -30.50 16 13 H 0.05 2.87 7.75 -2.91 -0.02 2.85 16 14 C 0.02 0.99 5.30 84.65 0.45 1.44 16 15 N -0.91 -53.18 11.31 21.45 0.24 -52.93 16 16 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C 0.13 5.94 5.64 86.22 0.49 6.43 16 21 C -0.12 -2.68 2.35 -10.27 -0.02 -2.71 16 22 C -0.16 -3.65 7.26 31.18 0.23 -3.43 16 23 C -0.13 -2.19 8.09 31.18 0.25 -1.94 16 24 C -0.11 -1.57 6.45 31.12 0.20 -1.37 16 25 H 0.10 1.18 7.34 -2.39 -0.02 1.17 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.35 4.87 -2.39 -0.01 1.33 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.04 1.26 6.39 -2.39 -0.02 1.25 16 30 H 0.09 1.51 6.57 -2.38 -0.02 1.49 16 31 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 32 H 0.13 2.88 2.69 -2.39 -0.01 2.87 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.04 1.57 7.86 -2.39 -0.02 1.55 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 3.31 6.04 -2.39 -0.01 3.29 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.05 2.44 7.00 -2.38 -0.02 2.43 16 39 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.10 2.35 4.88 -2.39 -0.01 2.33 16 41 H 0.09 2.09 5.54 -2.39 -0.01 2.07 16 42 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.09 6.45 -2.39 -0.02 1.07 16 Total: -1.00 -70.51 333.42 4.77 -65.74 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.96 Total: 16.44 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.02 Total: -22.44 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.19 Total: -78.14 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.51 4.77 -65.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397765692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.394 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds