Wall clock time and date at job start Tue Mar 31 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47137 * 2 1 4 4 C 1.50695 * 109.47342 * 239.99606 * 2 1 3 5 5 H 1.08009 * 120.00011 * 240.00158 * 4 2 1 6 6 C 1.37878 * 119.99997 * 60.00430 * 4 2 1 7 7 N 1.31511 * 120.00115 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47129 * 59.99884 * 8 6 4 10 10 H 1.48502 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47039 * 299.99771 * 8 6 4 12 12 C 1.53003 * 109.46900 * 119.99532 * 2 1 3 13 13 N 1.46501 * 109.46985 * 300.00405 * 12 2 1 14 14 C 1.34782 * 119.99680 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99878 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47114 * 186.39273 * 16 14 13 18 18 C 1.53005 * 109.47105 * 186.11360 * 17 16 14 19 19 C 1.53008 * 117.49692 * 124.89953 * 18 17 16 20 20 C 1.52997 * 117.49910 * 56.23962 * 18 17 16 21 21 C 1.53002 * 109.47228 * 66.11523 * 17 16 14 22 22 C 1.53004 * 117.49977 * 248.74669 * 21 17 16 23 23 C 1.53002 * 117.49633 * 180.08738 * 21 17 16 24 24 H 1.08993 * 109.47760 * 300.00360 * 1 2 3 25 25 H 1.09003 * 109.46733 * 60.00371 * 1 2 3 26 26 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.46876 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46528 * 299.99437 * 3 2 1 29 29 H 1.09003 * 109.46917 * 59.99241 * 3 2 1 30 30 H 0.96999 * 120.00110 * 180.02562 * 7 6 4 31 31 H 1.08991 * 109.47372 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.46831 * 59.99820 * 12 2 1 33 33 H 0.96995 * 120.00167 * 359.97438 * 13 12 2 34 34 H 1.08997 * 109.47320 * 66.39307 * 16 14 13 35 35 H 1.09006 * 109.47475 * 306.39290 * 16 14 13 36 36 H 1.08997 * 109.47295 * 306.11252 * 17 16 14 37 37 H 1.08999 * 115.54842 * 270.56365 * 18 17 16 38 38 H 1.09000 * 117.49516 * 359.97438 * 19 18 17 39 39 H 1.08993 * 117.49814 * 145.02002 * 19 18 17 40 40 H 1.09002 * 117.49977 * 214.98196 * 20 18 17 41 41 H 1.09007 * 117.49724 * 359.97438 * 20 18 17 42 42 H 1.09000 * 115.55090 * 34.42000 * 21 17 16 43 43 H 1.09000 * 117.49460 * 359.97438 * 22 21 17 44 44 H 1.08992 * 117.49612 * 145.02064 * 22 21 17 45 45 H 1.09009 * 117.49712 * 214.97464 * 23 21 17 46 46 H 1.09001 * 117.50480 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3227 -1.1197 -4.0078 9 1 1.8283 -2.5200 -4.0080 10 1 1.8272 -0.4201 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4454 14 6 1.8766 -0.4912 3.6696 15 8 2.5739 -1.4773 3.7810 16 6 1.3747 0.2195 4.9000 17 6 2.0110 -0.4034 6.1441 18 6 1.3888 0.2135 7.3984 19 6 0.7744 -0.7407 8.4247 20 6 -0.1315 0.1278 7.5482 21 6 3.5170 -0.1334 6.1363 22 6 4.4479 -1.3286 5.9217 23 6 4.3389 -0.6814 7.3046 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6765 1.9564 0.8899 30 1 0.7084 1.1607 -3.4845 31 1 3.1298 -0.7216 1.2492 32 1 1.6765 -1.7488 1.2494 33 1 0.9941 0.7583 2.3563 34 1 0.2906 0.1223 4.9589 35 1 1.6423 1.2748 4.8447 36 1 1.8347 -1.4791 6.1425 37 1 1.8821 1.1091 7.7760 38 1 0.8132 -1.8079 8.2060 39 1 0.8632 -0.4726 9.4774 40 1 -0.6383 0.9670 8.0246 41 1 -0.6884 -0.3677 6.7528 42 1 3.8208 0.8236 5.7123 43 1 3.9874 -2.3072 5.7865 44 1 5.3642 -1.1576 5.3569 45 1 5.1839 -0.0849 7.6490 46 1 3.8068 -1.2339 8.0791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400818742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:28 Heat of formation + Delta-G solvation = -22.235408 kcal Electronic energy + Delta-G solvation = -22381.038969 eV Core-core repulsion = 19270.978044 eV Total energy + Delta-G solvation = -3110.060925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96642 -39.32917 -37.94544 -36.95494 -34.89429 -33.04338 -32.23003 -27.76197 -27.55670 -27.20466 -25.50495 -23.21480 -23.13755 -22.23235 -21.45294 -20.59495 -20.37024 -18.29997 -17.61256 -16.83613 -16.76676 -16.55024 -16.17564 -15.79693 -15.26073 -14.97773 -14.74918 -14.52867 -14.28468 -13.93442 -13.37272 -13.16193 -13.09736 -13.02511 -12.65807 -12.62849 -12.38733 -12.32255 -12.26903 -12.23756 -12.13549 -11.92131 -11.47355 -11.26371 -11.19660 -11.06316 -10.83264 -10.72315 -10.62562 -10.43208 -10.39309 -9.81457 -8.02394 -6.18257 1.43193 1.44273 1.50964 1.87023 2.38397 2.54081 2.96373 3.06390 3.20877 3.63614 3.84438 4.00799 4.13854 4.18624 4.25808 4.29093 4.39991 4.47727 4.50308 4.54135 4.68150 4.72982 4.80841 4.86568 4.90385 4.91455 5.03529 5.06978 5.11176 5.13121 5.15926 5.17440 5.20615 5.35174 5.35654 5.38848 5.41139 5.56516 5.66662 5.67900 5.68948 6.16094 6.22860 6.44077 6.81145 6.86102 7.48838 7.49419 8.96154 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.003537 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.964212 B = 7913.646282 C = 8431.702171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.152 3.848 13 N -0.717 5.717 14 C 0.498 3.502 15 O -0.578 6.578 16 C -0.125 4.125 17 C -0.005 4.005 18 C -0.141 4.141 19 C -0.181 4.181 20 C -0.179 4.179 21 C -0.141 4.141 22 C -0.175 4.175 23 C -0.162 4.162 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 2.946 20.262 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.369 5.369 14 C 0.286 3.714 15 O -0.457 6.457 16 C -0.165 4.165 17 C -0.023 4.023 18 C -0.159 4.159 19 C -0.218 4.218 20 C -0.216 4.216 21 C -0.160 4.160 22 C -0.212 4.212 23 C -0.199 4.199 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.244 0.756 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.804 2.364 20.177 20.331 hybrid contribution 0.275 -0.433 -1.519 1.603 sum -0.529 1.931 18.659 18.766 Atomic orbital electron populations 1.21654 0.97105 0.98525 1.00423 1.18348 0.93245 0.93022 0.90361 1.21651 0.97746 0.97864 1.00407 1.21270 1.31782 1.12175 0.91768 0.93973 1.25442 0.95142 0.95597 1.00912 1.69895 1.36903 1.23258 1.23652 0.85844 0.78626 0.78839 0.79662 1.20302 1.20702 1.20302 1.21146 0.96622 0.94841 0.84649 1.46190 1.53188 1.32055 1.05443 1.21398 0.79864 0.84634 0.85507 1.90653 1.39491 1.28252 1.87351 1.21759 1.02825 1.01513 0.90357 1.19983 0.91885 0.98712 0.91769 1.22193 0.95364 1.01535 0.96823 1.23070 1.04601 0.96970 0.97142 1.23064 0.92516 1.03074 1.02905 1.22183 0.92620 0.97762 1.03393 1.22723 1.01006 0.97529 0.99966 1.22993 1.02298 1.03534 0.91071 0.94271 0.91971 0.96526 0.96550 0.91975 0.94289 0.93008 0.94895 0.94911 0.75640 0.87060 0.87044 0.92457 0.86675 0.89786 0.87680 0.87404 0.89097 0.88426 0.90630 0.90546 0.88013 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.25 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 8 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.15 6.51 4.50 86.38 0.39 6.90 16 13 N -0.72 -24.23 4.96 -463.06 -2.30 -26.52 16 14 C 0.50 16.00 7.52 87.65 0.66 16.66 16 15 O -0.58 -22.89 13.81 -3.04 -0.04 -22.93 16 16 C -0.13 -2.71 5.04 29.85 0.15 -2.56 16 17 C 0.00 -0.10 1.84 -10.79 -0.02 -0.12 16 18 C -0.14 -2.24 4.87 -10.79 -0.05 -2.30 16 19 C -0.18 -2.68 10.18 30.62 0.31 -2.37 16 20 C -0.18 -2.52 9.64 30.62 0.30 -2.22 16 21 C -0.14 -3.26 4.36 -10.79 -0.05 -3.31 16 22 C -0.18 -4.69 8.80 30.62 0.27 -4.42 16 23 C -0.16 -3.23 9.88 30.62 0.30 -2.93 16 24 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 25 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 29 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 30 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 11.89 6.16 -92.71 -0.57 11.32 16 34 H 0.11 2.01 6.85 -2.39 -0.02 2.00 16 35 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 1.51 7.32 -2.39 -0.02 1.49 16 37 H 0.12 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.36 7.34 -2.38 -0.02 1.35 16 42 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 43 H 0.08 2.32 7.84 -2.39 -0.02 2.31 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -60.20 358.51 4.30 -55.91 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.37 Total: 26.55 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.04 Total: -30.04 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.10 Total: -74.41 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.04 Total: -22.93 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -60.20 4.30 -55.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400818742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.672 kcal (2) G-P(sol) polarization free energy of solvation -60.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds