Wall clock time and date at job start Tue Mar 31 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47426 * 2 1 4 4 N 1.46507 * 109.47087 * 119.99902 * 2 1 3 5 5 C 1.46494 * 119.99891 * 299.99946 * 4 2 1 6 6 C 1.50700 * 109.47319 * 269.99944 * 5 4 2 7 7 H 1.08005 * 119.99771 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99720 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47149 * 90.00008 * 10 8 6 12 12 H 1.48501 * 109.47315 * 209.99966 * 10 8 6 13 13 H 1.48501 * 109.47271 * 330.00109 * 10 8 6 14 14 C 1.34779 * 120.00016 * 119.99682 * 4 2 1 15 15 O 1.21280 * 119.99591 * 179.97438 * 14 4 2 16 16 C 1.50694 * 120.00049 * 0.02562 * 14 4 2 17 17 C 1.52993 * 109.47151 * 186.21505 * 16 14 4 18 18 C 1.53002 * 109.47507 * 186.12586 * 17 16 14 19 19 C 1.53000 * 117.50317 * 124.99542 * 18 17 16 20 20 C 1.52999 * 117.49999 * 56.33258 * 18 17 16 21 21 C 1.52999 * 109.47204 * 66.12172 * 17 16 14 22 22 C 1.52996 * 117.50294 * 248.74565 * 21 17 16 23 23 C 1.53002 * 117.50085 * 180.08584 * 21 17 16 24 24 H 1.09002 * 109.47370 * 300.00369 * 1 2 3 25 25 H 1.09000 * 109.47192 * 60.00085 * 1 2 3 26 26 H 1.09006 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47370 * 239.99630 * 2 1 3 28 28 H 1.09004 * 109.47359 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46750 * 299.99600 * 3 2 1 30 30 H 1.08995 * 109.47460 * 60.00078 * 3 2 1 31 31 H 1.09004 * 109.47205 * 29.99802 * 5 4 2 32 32 H 1.09002 * 109.47380 * 149.99747 * 5 4 2 33 33 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.47346 * 66.21489 * 16 14 4 35 35 H 1.08995 * 109.47250 * 306.21814 * 16 14 4 36 36 H 1.09004 * 109.47515 * 306.12029 * 17 16 14 37 37 H 1.09003 * 115.54913 * 270.66938 * 18 17 16 38 38 H 1.08997 * 117.49907 * 359.97438 * 19 18 17 39 39 H 1.08999 * 117.50075 * 145.02475 * 19 18 17 40 40 H 1.09002 * 117.50187 * 214.98130 * 20 18 17 41 41 H 1.08999 * 117.49955 * 359.97438 * 20 18 17 42 42 H 1.08999 * 115.54878 * 34.42288 * 21 17 16 43 43 H 1.09005 * 117.49610 * 0.02562 * 22 21 17 44 44 H 1.09001 * 117.49955 * 145.01871 * 22 21 17 45 45 H 1.08995 * 117.50139 * 214.98529 * 23 21 17 46 46 H 1.08998 * 117.50063 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5811 1.4109 4.2140 9 7 1.5584 1.1258 4.9901 10 14 3.8690 2.6399 4.7798 11 1 3.4771 4.0041 4.3432 12 1 3.9704 2.6042 6.2609 13 1 5.1836 2.2885 4.1850 14 6 2.7931 -1.7865 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1576 -2.3011 -0.2961 17 6 3.9050 -3.6290 -0.1593 18 6 4.4081 -4.0751 -1.5336 19 6 5.9034 -4.3652 -1.6787 20 6 5.3033 -3.1050 -2.3073 21 6 2.9597 -4.6904 0.4070 22 6 3.2333 -5.1960 1.8248 23 6 3.5235 -6.0965 0.6215 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 0.6904 0.2975 2.4843 32 1 1.6237 -1.0226 3.2292 33 1 1.4724 1.5546 5.8560 34 1 3.7961 -1.5749 -0.7992 35 1 2.2502 -2.4534 -0.8805 36 1 4.7528 -3.5011 0.5139 37 1 3.7177 -4.6912 -2.1097 38 1 6.5288 -4.2378 -0.7951 39 1 6.1967 -5.1718 -2.3505 40 1 5.2022 -3.0832 -3.3924 41 1 5.5335 -2.1488 -1.8374 42 1 1.9189 -4.6079 0.0942 43 1 4.0866 -4.7722 2.3544 44 1 2.3724 -5.4465 2.4447 45 1 2.8535 -6.9389 0.4502 46 1 4.5678 -6.2655 0.3588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400950702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:17 Heat of formation + Delta-G solvation = -1.266791 kcal Electronic energy + Delta-G solvation = -23076.629273 eV Core-core repulsion = 19967.477615 eV Total energy + Delta-G solvation = -3109.151658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.60950 -38.08576 -36.07546 -35.66808 -32.84230 -31.43118 -30.71933 -27.56946 -26.69169 -25.11132 -22.71618 -22.25961 -22.04718 -21.21611 -21.03728 -19.56308 -17.81009 -16.60550 -16.40352 -15.77068 -15.34690 -14.87465 -14.53585 -14.20571 -14.06272 -13.61067 -13.41107 -12.99261 -12.65971 -12.31395 -12.06779 -11.85699 -11.67835 -11.57469 -11.52337 -11.28251 -11.13732 -11.12108 -10.95505 -10.81400 -10.78667 -10.52065 -10.32060 -10.22837 -10.08590 -9.94441 -9.69547 -9.56479 -9.45713 -8.65377 -8.37713 -7.52602 -5.98919 -4.01724 3.31614 3.38731 3.42433 3.60188 3.76113 4.03781 4.17064 4.48438 4.66135 4.87812 4.92915 5.06554 5.25651 5.26394 5.32809 5.34654 5.39119 5.49493 5.55971 5.61091 5.62750 5.72271 5.74307 5.87263 5.88716 5.95543 5.98897 6.06798 6.11421 6.14550 6.22270 6.33710 6.36991 6.38248 6.40812 6.55738 6.64512 6.68256 7.00092 7.20756 7.54921 7.68029 7.99020 8.32144 8.58327 8.98643 9.25768 9.62554 11.09093 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.005121 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.496269 B = 5466.436386 C = 5774.584653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.157 4.157 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.533 6.533 16 C -0.132 4.132 17 C -0.010 4.010 18 C -0.138 4.138 19 C -0.181 4.181 20 C -0.184 4.184 21 C -0.135 4.135 22 C -0.148 4.148 23 C -0.190 4.190 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -8.279 -15.233 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.329 5.329 5 C 0.128 3.872 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.410 6.410 16 C -0.173 4.173 17 C -0.029 4.029 18 C -0.157 4.157 19 C -0.218 4.218 20 C -0.221 4.221 21 C -0.153 4.153 22 C -0.185 4.185 23 C -0.227 4.227 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.031 -8.530 -14.502 16.947 hybrid contribution 0.589 0.887 0.312 1.109 sum 2.620 -7.643 -14.190 16.329 Atomic orbital electron populations 1.22157 0.95844 1.01662 1.02310 1.20962 0.93911 0.94029 0.88206 1.22137 1.01270 0.95888 1.02164 1.48319 1.49581 1.26680 1.08310 1.19175 0.95651 0.94849 0.77524 1.21451 1.08814 1.23221 1.01956 0.92518 1.24918 0.95714 0.97148 0.96405 1.69931 1.29602 1.43328 1.10714 0.86580 0.82113 0.81322 0.77894 1.20747 1.21214 1.20011 1.20316 0.79213 0.80756 0.90697 1.90651 1.53013 1.57733 1.39630 1.21747 1.01357 0.97532 0.96616 1.20085 0.97405 0.92070 0.93346 1.22314 0.92883 1.02747 0.97722 1.23006 0.96172 0.99447 1.03144 1.22977 1.05067 0.94823 0.99241 1.22048 0.98733 0.93989 1.00533 1.22821 1.03444 1.01705 0.90538 1.22954 1.01402 0.93461 1.04914 0.91394 0.92430 0.93017 0.90755 0.92850 0.93425 0.90153 0.95101 0.94171 0.92889 0.89606 0.89958 0.90155 0.87910 0.88914 0.89218 0.89082 0.88708 0.88791 0.88354 0.89643 0.89746 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.17 37.15 0.34 -2.06 16 2 C 0.13 2.18 3.15 -67.93 -0.21 1.97 16 3 C -0.16 -2.60 8.47 37.15 0.31 -2.29 16 4 N -0.60 -12.39 2.39 -167.47 -0.40 -12.79 16 5 C 0.25 6.37 4.59 -5.20 -0.02 6.34 16 6 C -0.52 -14.33 7.83 -34.44 -0.27 -14.60 16 7 H 0.06 1.58 7.63 -52.48 -0.40 1.18 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.50 10.20 7.36 -10.99 -0.08 10.12 16 15 O -0.53 -12.78 13.39 5.56 0.07 -12.71 16 16 C -0.13 -1.96 3.41 -27.89 -0.10 -2.05 16 17 C -0.01 -0.14 1.84 -90.62 -0.17 -0.31 16 18 C -0.14 -1.53 4.87 -90.62 -0.44 -1.98 16 19 C -0.18 -1.85 10.18 -26.69 -0.27 -2.13 16 20 C -0.18 -1.88 9.64 -26.69 -0.26 -2.13 16 21 C -0.13 -1.91 4.36 -90.62 -0.39 -2.30 16 22 C -0.15 -2.29 8.80 -26.70 -0.24 -2.52 16 23 C -0.19 -2.37 9.88 -26.70 -0.26 -2.63 16 24 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.02 5.75 -51.93 -0.30 0.72 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 31 H 0.03 0.81 6.43 -51.93 -0.33 0.48 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.18 6.75 -51.93 -0.35 0.83 16 35 H 0.08 1.07 7.45 -51.93 -0.39 0.68 16 36 H 0.08 1.31 7.32 -51.93 -0.38 0.93 16 37 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 38 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.03 7.34 -51.93 -0.38 0.65 16 42 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 43 H 0.10 1.70 7.84 -51.93 -0.41 1.29 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -30.88 362.27 -9.53 -40.42 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.23 Total: 3.57 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.16 Total: -14.98 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.34 Total: -38.67 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.88 -9.53 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400950702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.151 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds