Wall clock time and date at job start Tue Mar 31 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47426 * 2 1 4 4 N 1.46507 * 109.47087 * 119.99902 * 2 1 3 5 5 C 1.46494 * 119.99891 * 299.99946 * 4 2 1 6 6 C 1.50700 * 109.47319 * 269.99944 * 5 4 2 7 7 H 1.08005 * 119.99771 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99720 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47149 * 90.00008 * 10 8 6 12 12 H 1.48501 * 109.47315 * 209.99966 * 10 8 6 13 13 H 1.48501 * 109.47271 * 330.00109 * 10 8 6 14 14 C 1.34779 * 120.00016 * 119.99682 * 4 2 1 15 15 O 1.21280 * 119.99591 * 179.97438 * 14 4 2 16 16 C 1.50694 * 120.00049 * 0.02562 * 14 4 2 17 17 C 1.52993 * 109.47151 * 186.21505 * 16 14 4 18 18 C 1.53002 * 109.47507 * 186.12586 * 17 16 14 19 19 C 1.53000 * 117.50317 * 124.99542 * 18 17 16 20 20 C 1.52999 * 117.49999 * 56.33258 * 18 17 16 21 21 C 1.52999 * 109.47204 * 66.12172 * 17 16 14 22 22 C 1.52996 * 117.50294 * 248.74565 * 21 17 16 23 23 C 1.53002 * 117.50085 * 180.08584 * 21 17 16 24 24 H 1.09002 * 109.47370 * 300.00369 * 1 2 3 25 25 H 1.09000 * 109.47192 * 60.00085 * 1 2 3 26 26 H 1.09006 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47370 * 239.99630 * 2 1 3 28 28 H 1.09004 * 109.47359 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46750 * 299.99600 * 3 2 1 30 30 H 1.08995 * 109.47460 * 60.00078 * 3 2 1 31 31 H 1.09004 * 109.47205 * 29.99802 * 5 4 2 32 32 H 1.09002 * 109.47380 * 149.99747 * 5 4 2 33 33 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.47346 * 66.21489 * 16 14 4 35 35 H 1.08995 * 109.47250 * 306.21814 * 16 14 4 36 36 H 1.09004 * 109.47515 * 306.12029 * 17 16 14 37 37 H 1.09003 * 115.54913 * 270.66938 * 18 17 16 38 38 H 1.08997 * 117.49907 * 359.97438 * 19 18 17 39 39 H 1.08999 * 117.50075 * 145.02475 * 19 18 17 40 40 H 1.09002 * 117.50187 * 214.98130 * 20 18 17 41 41 H 1.08999 * 117.49955 * 359.97438 * 20 18 17 42 42 H 1.08999 * 115.54878 * 34.42288 * 21 17 16 43 43 H 1.09005 * 117.49610 * 0.02562 * 22 21 17 44 44 H 1.09001 * 117.49955 * 145.01871 * 22 21 17 45 45 H 1.08995 * 117.50139 * 214.98529 * 23 21 17 46 46 H 1.08998 * 117.50063 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5811 1.4109 4.2140 9 7 1.5584 1.1258 4.9901 10 14 3.8690 2.6399 4.7798 11 1 3.4771 4.0041 4.3432 12 1 3.9704 2.6042 6.2609 13 1 5.1836 2.2885 4.1850 14 6 2.7931 -1.7865 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1576 -2.3011 -0.2961 17 6 3.9050 -3.6290 -0.1593 18 6 4.4081 -4.0751 -1.5336 19 6 5.9034 -4.3652 -1.6787 20 6 5.3033 -3.1050 -2.3073 21 6 2.9597 -4.6904 0.4070 22 6 3.2333 -5.1960 1.8248 23 6 3.5235 -6.0965 0.6215 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 0.6904 0.2975 2.4843 32 1 1.6237 -1.0226 3.2292 33 1 1.4724 1.5546 5.8560 34 1 3.7961 -1.5749 -0.7992 35 1 2.2502 -2.4534 -0.8805 36 1 4.7528 -3.5011 0.5139 37 1 3.7177 -4.6912 -2.1097 38 1 6.5288 -4.2378 -0.7951 39 1 6.1967 -5.1718 -2.3505 40 1 5.2022 -3.0832 -3.3924 41 1 5.5335 -2.1488 -1.8374 42 1 1.9189 -4.6079 0.0942 43 1 4.0866 -4.7722 2.3544 44 1 2.3724 -5.4465 2.4447 45 1 2.8535 -6.9389 0.4502 46 1 4.5678 -6.2655 0.3588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400950702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:16 Heat of formation + Delta-G solvation = -17.259847 kcal Electronic energy + Delta-G solvation = -23077.322784 eV Core-core repulsion = 19967.477615 eV Total energy + Delta-G solvation = -3109.845169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03693 -39.30266 -37.39726 -36.91221 -34.94319 -32.70580 -32.33855 -29.44951 -27.97549 -26.58260 -24.49263 -23.20998 -23.13375 -22.52667 -22.17922 -20.63469 -19.34559 -18.57413 -18.06168 -16.95913 -16.76236 -16.40183 -16.08555 -15.58772 -15.23398 -14.87009 -14.79980 -14.45551 -14.20018 -13.88860 -13.40005 -13.31735 -13.27886 -12.97893 -12.80004 -12.74401 -12.47252 -12.39918 -12.32225 -12.25821 -12.18671 -12.08338 -11.91839 -11.61146 -11.48086 -11.19050 -11.05370 -10.74185 -10.61293 -10.59435 -10.27107 -9.30358 -8.17995 -6.29792 1.34070 1.36891 1.46582 2.01211 2.34555 2.50508 2.96765 3.05447 3.11235 3.62283 3.75908 3.97246 4.05317 4.10103 4.19232 4.25045 4.28939 4.31847 4.40925 4.47063 4.50112 4.67735 4.75545 4.82708 4.86411 4.87980 4.90900 4.94132 5.05542 5.08517 5.10406 5.15422 5.16106 5.17410 5.30607 5.35662 5.35961 5.40181 5.46282 5.57447 5.60021 5.67638 5.97333 6.15186 6.77721 6.96497 7.34970 7.66278 8.88827 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.005121 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.496269 B = 5466.436386 C = 5774.584653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 C -0.152 4.152 4 N -0.603 5.603 5 C 0.267 3.733 6 C -0.522 4.522 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.491 3.509 15 O -0.582 6.582 16 C -0.119 4.119 17 C -0.006 4.006 18 C -0.138 4.138 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.138 4.138 22 C -0.180 4.180 23 C -0.155 4.155 24 H 0.035 0.965 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.115 0.885 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.020 0.980 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -8.325 -18.976 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 C -0.209 4.209 4 N -0.334 5.334 5 C 0.145 3.855 6 C -0.560 4.560 7 H 0.070 0.930 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.200 1.200 14 C 0.280 3.720 15 O -0.462 6.462 16 C -0.158 4.158 17 C -0.025 4.025 18 C -0.156 4.156 19 C -0.218 4.218 20 C -0.214 4.214 21 C -0.156 4.156 22 C -0.218 4.218 23 C -0.192 4.192 24 H 0.054 0.946 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.511 -8.563 -18.292 20.353 hybrid contribution 0.423 0.884 1.498 1.790 sum 2.935 -7.679 -16.795 18.699 Atomic orbital electron populations 1.22117 0.94595 1.02098 1.02592 1.21372 0.94981 0.93880 0.87446 1.22076 1.00550 0.96074 1.02249 1.48375 1.49888 1.27323 1.07855 1.18551 0.94873 0.92400 0.79632 1.21666 1.08852 1.23394 1.02128 0.93029 1.25787 0.97772 0.99134 0.96576 1.70057 1.31411 1.44592 1.11135 0.85542 0.79222 0.79515 0.77306 1.18915 1.20945 1.19966 1.21408 0.78047 0.79954 0.92592 1.90639 1.54584 1.59048 1.41903 1.21748 1.03053 0.98125 0.92895 1.19985 0.96094 0.91677 0.94719 1.22180 0.93594 1.03845 0.96012 1.23061 0.95295 1.00402 1.03086 1.23051 1.03870 0.94143 1.00317 1.22151 0.99287 0.95364 0.98817 1.22683 1.02353 1.05010 0.91707 1.22991 1.02294 0.93058 1.00852 0.94602 0.88561 0.92538 0.86679 0.93880 0.89280 0.94038 0.96189 0.99248 0.92727 0.87766 0.86896 0.93418 0.86099 0.90351 0.87252 0.86836 0.89673 0.88222 0.91385 0.90709 0.87541 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.17 71.98 0.66 -3.69 16 2 C 0.13 3.89 3.15 44.99 0.14 4.03 16 3 C -0.15 -4.81 8.47 71.98 0.61 -4.20 16 4 N -0.60 -25.49 2.39 -802.15 -1.91 -27.41 16 5 C 0.27 14.54 4.59 85.63 0.39 14.93 16 6 C -0.52 -30.16 7.83 25.60 0.20 -29.96 16 7 H 0.05 2.97 7.63 -2.91 -0.02 2.94 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 10 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.49 20.24 7.36 87.65 0.65 20.88 16 15 O -0.58 -29.59 13.39 -3.03 -0.04 -29.63 16 16 C -0.12 -3.28 3.41 29.84 0.10 -3.18 16 17 C -0.01 -0.16 1.84 -10.80 -0.02 -0.17 16 18 C -0.14 -2.62 4.87 -10.79 -0.05 -2.68 16 19 C -0.18 -3.24 10.18 30.62 0.31 -2.93 16 20 C -0.18 -2.98 9.64 30.62 0.30 -2.69 16 21 C -0.14 -3.80 4.36 -10.79 -0.05 -3.85 16 22 C -0.18 -5.86 8.80 30.62 0.27 -5.59 16 23 C -0.16 -3.64 9.88 30.62 0.30 -3.34 16 24 H 0.03 1.22 6.66 -2.39 -0.02 1.20 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.12 2.65 5.75 -2.39 -0.01 2.64 16 28 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.63 6.92 -2.39 -0.02 1.62 16 31 H 0.02 1.12 6.43 -2.38 -0.02 1.11 16 32 H -0.01 -0.68 7.42 -2.39 -0.02 -0.69 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.10 2.54 6.75 -2.38 -0.02 2.53 16 35 H 0.11 2.47 7.45 -2.39 -0.02 2.46 16 36 H 0.05 1.59 7.32 -2.38 -0.02 1.57 16 37 H 0.12 1.94 8.09 -2.39 -0.02 1.92 16 38 H 0.08 1.63 8.03 -2.39 -0.02 1.61 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.62 7.34 -2.39 -0.02 1.60 16 42 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 43 H 0.07 2.59 7.84 -2.38 -0.02 2.57 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.92 362.27 5.56 -67.36 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.93 Total: 20.56 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.27 Total: -21.65 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.63 Total: -84.58 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.04 Total: -29.63 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.92 5.56 -67.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400950702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.097 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds