Wall clock time and date at job start Tue Mar 31 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46781 * 2 1 4 4 H 1.09000 * 109.47187 * 304.99039 * 3 2 1 5 5 C 1.52995 * 109.47467 * 64.99723 * 3 2 1 6 6 C 1.53005 * 109.47104 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46878 * 299.99679 * 6 5 3 8 8 H 1.08994 * 109.47208 * 300.00281 * 7 6 5 9 9 C 1.50698 * 109.46882 * 179.97438 * 7 6 5 10 10 O 1.21284 * 120.00333 * 260.05016 * 9 7 6 11 11 N 1.34782 * 120.00136 * 80.04501 * 9 7 6 12 12 C 1.46493 * 120.00038 * 184.42201 * 11 9 7 13 13 C 1.53005 * 109.46773 * 175.63822 * 12 11 9 14 14 C 1.50700 * 115.54892 * 279.99046 * 13 12 11 15 15 H 1.08003 * 119.99947 * 95.69313 * 14 13 12 16 16 C 1.37874 * 120.00303 * 275.69662 * 14 13 12 17 17 N 1.31514 * 119.99956 * 9.85678 * 16 14 13 18 18 Si 1.86795 * 120.00120 * 189.86162 * 16 14 13 19 19 H 1.48499 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47437 * 119.99573 * 18 16 14 21 21 H 1.48500 * 109.47026 * 239.99630 * 18 16 14 22 22 C 1.53008 * 117.49952 * 134.28945 * 13 12 11 23 23 C 1.52998 * 117.49899 * 65.66751 * 13 12 11 24 24 C 1.52995 * 109.46991 * 60.00252 * 7 6 5 25 25 C 1.53003 * 109.47467 * 299.99670 * 24 7 6 26 26 H 1.09002 * 109.46744 * 60.00822 * 1 2 3 27 27 H 1.09008 * 109.46723 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47821 * 300.00158 * 1 2 3 29 29 H 1.08993 * 109.47797 * 239.99536 * 2 1 3 30 30 H 1.09009 * 109.47084 * 119.99341 * 2 1 3 31 31 H 1.09003 * 109.47246 * 299.99926 * 5 3 2 32 32 H 1.09001 * 109.47130 * 60.00386 * 5 3 2 33 33 H 1.09001 * 109.46809 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.46908 * 59.99802 * 6 5 3 35 35 H 0.97000 * 119.99221 * 4.69430 * 11 9 7 36 36 H 1.09004 * 109.47085 * 295.63320 * 12 11 9 37 37 H 1.09001 * 109.47705 * 55.63541 * 12 11 9 38 38 H 0.97002 * 120.00383 * 184.99952 * 17 16 14 39 39 H 1.09005 * 117.49515 * 359.97438 * 22 13 12 40 40 H 1.08991 * 117.49985 * 145.01414 * 22 13 12 41 41 H 1.09001 * 117.49461 * 214.97292 * 23 13 12 42 42 H 1.08991 * 117.50042 * 359.97340 * 23 13 12 43 43 H 1.09008 * 109.47206 * 59.99954 * 24 7 6 44 44 H 1.09003 * 109.47246 * 179.97438 * 24 7 6 45 45 H 1.08993 * 109.47437 * 180.02562 * 25 24 7 46 46 H 1.09000 * 109.46663 * 300.00705 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1445 3.5694 1.3069 7 6 3.6693 3.5718 1.1810 8 1 4.1042 3.0331 2.0228 9 6 4.1710 4.9928 1.1800 10 8 4.4582 5.5338 0.1332 11 7 4.3004 5.6626 2.3424 12 6 4.6950 7.0734 2.3348 13 6 4.6626 7.6196 3.7637 14 6 3.2998 7.9975 4.2843 15 1 2.7351 7.2949 4.8791 16 6 2.7739 9.2402 4.0013 17 7 3.3660 10.0204 3.1236 18 14 1.2205 9.8156 4.8644 19 1 0.7529 8.7598 5.7981 20 1 1.5082 11.0579 5.6254 21 1 0.1650 10.0865 3.8555 22 6 5.8541 8.4612 4.2255 23 6 5.6657 7.0415 4.7639 24 6 4.0741 2.8877 -0.1263 25 6 3.5647 1.4449 -0.1260 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 0.5487 2.1253 1.3968 32 1 2.0697 1.5877 2.1491 33 1 1.8557 4.0569 2.2381 34 1 1.7095 4.1080 0.4651 35 1 4.1362 5.2094 3.1841 36 1 5.7040 7.1663 1.9332 37 1 4.0027 7.6411 1.7131 38 1 3.0388 10.9218 2.9774 39 1 6.6612 8.6253 3.5115 40 1 5.6524 9.2884 4.9059 41 1 5.3400 6.9348 5.7987 42 1 6.3484 6.2717 4.4042 43 1 3.6392 3.4264 -0.9682 44 1 5.1604 2.8897 -0.2162 45 1 3.8535 0.9575 -1.0571 46 1 3.9997 0.9063 0.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404121318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:57 Heat of formation + Delta-G solvation = -59.149226 kcal Electronic energy + Delta-G solvation = -22338.049401 eV Core-core repulsion = 19226.387773 eV Total energy + Delta-G solvation = -3111.661629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83721 -38.06513 -36.65729 -33.88033 -33.23219 -31.97473 -30.79824 -29.38722 -26.45695 -25.29522 -23.91195 -22.62209 -21.40273 -21.02187 -19.91346 -19.50151 -19.11369 -16.87866 -15.96862 -15.60061 -14.99032 -14.72107 -14.65464 -14.41841 -13.98349 -13.82339 -13.61112 -13.44489 -13.03223 -12.84809 -12.52123 -12.10922 -11.89308 -11.72271 -11.65959 -11.46813 -11.17592 -11.10116 -11.07007 -10.86509 -10.82840 -10.53088 -10.52079 -10.30982 -10.28225 -9.95439 -9.68034 -9.14281 -8.94486 -8.48855 -8.23578 -8.10091 -6.10051 -4.16288 3.24010 3.25334 3.34717 3.36986 3.89577 4.36717 4.58552 4.62246 4.72288 4.98287 5.09426 5.15692 5.19772 5.25557 5.30732 5.39150 5.45910 5.50818 5.53621 5.56144 5.64077 5.80060 5.82590 5.86940 5.96094 6.01932 6.06432 6.13657 6.19124 6.24789 6.28801 6.32415 6.38452 6.43865 6.51029 6.59959 6.64673 6.89576 7.05319 7.28951 7.42163 7.52212 7.81629 8.31514 8.33940 8.84075 8.93267 9.50486 10.99135 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.004052 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.686573 B = 6908.466602 C = 7721.187672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.103 4.103 8 H 0.086 0.914 9 C 0.507 3.493 10 O -0.556 6.556 11 N -0.708 5.708 12 C 0.162 3.838 13 C 0.030 3.970 14 C -0.498 4.498 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.872 5.872 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.152 4.152 23 C -0.210 4.210 24 C -0.099 4.099 25 C -0.112 4.112 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -17.616 -3.280 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.125 4.125 8 H 0.104 0.896 9 C 0.292 3.708 10 O -0.435 6.435 11 N -0.357 5.357 12 C 0.039 3.961 13 C 0.029 3.971 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.508 5.508 18 Si 0.714 3.286 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.190 4.190 23 C -0.248 4.248 24 C -0.137 4.137 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.817 -17.023 -4.165 17.619 hybrid contribution -0.822 0.396 0.940 1.310 sum -2.639 -16.627 -3.225 17.141 Atomic orbital electron populations 1.21831 0.96061 1.01257 1.02059 1.21565 0.95788 0.96559 1.01720 1.21236 0.95645 0.95558 0.98452 0.91116 1.21620 1.00708 0.95234 0.97308 1.21476 0.93018 0.97109 1.03094 1.21294 0.97390 0.93663 1.00157 0.89616 1.20557 0.78040 0.88087 0.84089 1.90647 1.50944 1.70168 1.31725 1.46110 1.68507 1.13148 1.07892 1.21082 0.97811 0.78729 0.98434 1.19071 0.91105 0.97823 0.89055 1.20409 0.99919 1.00272 1.32964 0.92142 1.24961 0.96980 0.97097 0.94033 1.70043 1.41659 1.08150 1.30970 0.86636 0.83482 0.78818 0.79677 1.19708 1.20907 1.21058 1.22533 1.00662 0.92846 1.02978 1.22974 1.05379 0.96718 0.99696 1.21340 1.00879 0.94680 0.96828 1.21599 0.95094 0.96673 1.01624 0.92821 0.93135 0.92367 0.92243 0.92116 0.91568 0.91896 0.90993 0.91378 0.77040 0.94715 0.90572 0.92933 0.91644 0.89937 0.90276 0.91607 0.90901 0.91839 0.91989 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.10 16 3 C -0.09 -0.86 2.19 -90.62 -0.20 -1.05 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 5 C -0.11 -1.12 4.96 -26.73 -0.13 -1.25 16 6 C -0.11 -1.39 5.19 -26.73 -0.14 -1.53 16 7 C -0.10 -1.42 2.52 -91.77 -0.23 -1.65 16 8 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 9 C 0.51 9.43 6.99 -10.98 -0.08 9.35 16 10 O -0.56 -12.54 16.04 5.55 0.09 -12.45 16 11 N -0.71 -13.59 5.52 -60.29 -0.33 -13.92 16 12 C 0.16 3.74 5.56 -4.04 -0.02 3.72 16 13 C 0.03 0.71 1.32 -155.65 -0.20 0.50 16 14 C -0.50 -12.93 8.81 -34.44 -0.30 -13.23 16 15 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 16 C 0.07 1.96 5.37 -17.82 -0.10 1.86 16 17 N -0.87 -24.40 13.07 55.43 0.72 -23.67 16 18 Si 0.89 20.63 29.55 -169.99 -5.02 15.61 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C -0.15 -3.45 9.54 -26.73 -0.25 -3.71 16 23 C -0.21 -4.29 9.85 -26.73 -0.26 -4.55 16 24 C -0.10 -1.27 4.67 -26.73 -0.12 -1.39 16 25 C -0.11 -1.11 5.21 -26.73 -0.14 -1.25 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 6.76 8.42 -40.82 -0.34 6.42 16 36 H 0.03 0.81 7.95 -51.93 -0.41 0.39 16 37 H 0.08 2.04 8.12 -51.93 -0.42 1.62 16 38 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 40 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.05 7.90 -51.92 -0.41 0.64 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -29.14 364.63 -9.60 -38.74 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.58 Total: 6.29 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.97 Total: -16.10 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.39 Total: -37.59 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.14 -9.60 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404121318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.411 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds