Wall clock time and date at job start Tue Mar 31 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46781 * 2 1 4 4 H 1.09000 * 109.47187 * 304.99039 * 3 2 1 5 5 C 1.52995 * 109.47467 * 64.99723 * 3 2 1 6 6 C 1.53005 * 109.47104 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46878 * 299.99679 * 6 5 3 8 8 H 1.08994 * 109.47208 * 300.00281 * 7 6 5 9 9 C 1.50698 * 109.46882 * 179.97438 * 7 6 5 10 10 O 1.21284 * 120.00333 * 260.05016 * 9 7 6 11 11 N 1.34782 * 120.00136 * 80.04501 * 9 7 6 12 12 C 1.46493 * 120.00038 * 184.42201 * 11 9 7 13 13 C 1.53005 * 109.46773 * 175.63822 * 12 11 9 14 14 C 1.50700 * 115.54892 * 279.99046 * 13 12 11 15 15 H 1.08003 * 119.99947 * 95.69313 * 14 13 12 16 16 C 1.37874 * 120.00303 * 275.69662 * 14 13 12 17 17 N 1.31514 * 119.99956 * 9.85678 * 16 14 13 18 18 Si 1.86795 * 120.00120 * 189.86162 * 16 14 13 19 19 H 1.48499 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47437 * 119.99573 * 18 16 14 21 21 H 1.48500 * 109.47026 * 239.99630 * 18 16 14 22 22 C 1.53008 * 117.49952 * 134.28945 * 13 12 11 23 23 C 1.52998 * 117.49899 * 65.66751 * 13 12 11 24 24 C 1.52995 * 109.46991 * 60.00252 * 7 6 5 25 25 C 1.53003 * 109.47467 * 299.99670 * 24 7 6 26 26 H 1.09002 * 109.46744 * 60.00822 * 1 2 3 27 27 H 1.09008 * 109.46723 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47821 * 300.00158 * 1 2 3 29 29 H 1.08993 * 109.47797 * 239.99536 * 2 1 3 30 30 H 1.09009 * 109.47084 * 119.99341 * 2 1 3 31 31 H 1.09003 * 109.47246 * 299.99926 * 5 3 2 32 32 H 1.09001 * 109.47130 * 60.00386 * 5 3 2 33 33 H 1.09001 * 109.46809 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.46908 * 59.99802 * 6 5 3 35 35 H 0.97000 * 119.99221 * 4.69430 * 11 9 7 36 36 H 1.09004 * 109.47085 * 295.63320 * 12 11 9 37 37 H 1.09001 * 109.47705 * 55.63541 * 12 11 9 38 38 H 0.97002 * 120.00383 * 184.99952 * 17 16 14 39 39 H 1.09005 * 117.49515 * 359.97438 * 22 13 12 40 40 H 1.08991 * 117.49985 * 145.01414 * 22 13 12 41 41 H 1.09001 * 117.49461 * 214.97292 * 23 13 12 42 42 H 1.08991 * 117.50042 * 359.97340 * 23 13 12 43 43 H 1.09008 * 109.47206 * 59.99954 * 24 7 6 44 44 H 1.09003 * 109.47246 * 179.97438 * 24 7 6 45 45 H 1.08993 * 109.47437 * 180.02562 * 25 24 7 46 46 H 1.09000 * 109.46663 * 300.00705 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1445 3.5694 1.3069 7 6 3.6693 3.5718 1.1810 8 1 4.1042 3.0331 2.0228 9 6 4.1710 4.9928 1.1800 10 8 4.4582 5.5338 0.1332 11 7 4.3004 5.6626 2.3424 12 6 4.6950 7.0734 2.3348 13 6 4.6626 7.6196 3.7637 14 6 3.2998 7.9975 4.2843 15 1 2.7351 7.2949 4.8791 16 6 2.7739 9.2402 4.0013 17 7 3.3660 10.0204 3.1236 18 14 1.2205 9.8156 4.8644 19 1 0.7529 8.7598 5.7981 20 1 1.5082 11.0579 5.6254 21 1 0.1650 10.0865 3.8555 22 6 5.8541 8.4612 4.2255 23 6 5.6657 7.0415 4.7639 24 6 4.0741 2.8877 -0.1263 25 6 3.5647 1.4449 -0.1260 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 0.5487 2.1253 1.3968 32 1 2.0697 1.5877 2.1491 33 1 1.8557 4.0569 2.2381 34 1 1.7095 4.1080 0.4651 35 1 4.1362 5.2094 3.1841 36 1 5.7040 7.1663 1.9332 37 1 4.0027 7.6411 1.7131 38 1 3.0388 10.9218 2.9774 39 1 6.6612 8.6253 3.5115 40 1 5.6524 9.2884 4.9059 41 1 5.3400 6.9348 5.7987 42 1 6.3484 6.2717 4.4042 43 1 3.6392 3.4264 -0.9682 44 1 5.1604 2.8897 -0.2162 45 1 3.8535 0.9575 -1.0571 46 1 3.9997 0.9063 0.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404121318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:56 Heat of formation + Delta-G solvation = -74.570031 kcal Electronic energy + Delta-G solvation = -22338.718098 eV Core-core repulsion = 19226.387773 eV Total energy + Delta-G solvation = -3112.330325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16563 -39.28456 -38.36144 -35.00321 -34.70348 -33.96995 -31.72866 -30.31323 -28.17384 -27.14049 -24.92125 -23.56003 -23.04431 -22.12687 -21.24471 -20.85441 -20.53581 -18.48486 -17.68736 -16.88020 -16.66291 -16.25584 -15.94419 -15.54700 -15.31282 -15.09565 -14.86381 -14.42505 -14.31937 -14.09381 -13.67341 -13.56497 -13.32296 -13.06974 -13.03370 -12.79508 -12.69186 -12.44250 -12.34296 -12.08009 -12.05737 -11.98543 -11.61780 -11.53587 -11.33237 -11.21610 -10.82316 -10.80595 -10.66083 -10.46888 -10.01474 -9.85823 -8.13632 -6.24558 1.39833 1.43544 1.53105 1.73083 2.38906 2.42994 3.16460 3.47039 3.70126 3.75252 3.79578 4.12092 4.16661 4.21741 4.28080 4.45617 4.47979 4.54797 4.57659 4.61084 4.61885 4.66435 4.72659 4.76441 4.83544 4.96524 4.97695 5.03652 5.09179 5.17246 5.21798 5.24417 5.26293 5.29360 5.32093 5.38495 5.43714 5.57765 5.58813 5.61575 5.66214 5.69048 5.77869 6.35459 6.77136 6.83949 7.40823 7.45093 8.95605 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.004052 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.686573 B = 6908.466602 C = 7721.187672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.090 4.090 4 H 0.057 0.943 5 C -0.104 4.104 6 C -0.107 4.107 7 C -0.093 4.093 8 H 0.117 0.883 9 C 0.502 3.498 10 O -0.601 6.601 11 N -0.702 5.702 12 C 0.180 3.820 13 C 0.006 3.994 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.947 3.053 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.290 1.290 22 C -0.164 4.164 23 C -0.171 4.171 24 C -0.098 4.098 25 C -0.104 4.104 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.410 0.590 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -20.512 -1.773 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.108 4.108 4 H 0.075 0.925 5 C -0.141 4.141 6 C -0.145 4.145 7 C -0.114 4.114 8 H 0.135 0.865 9 C 0.290 3.710 10 O -0.483 6.483 11 N -0.351 5.351 12 C 0.056 3.944 13 C 0.005 3.995 14 C -0.541 4.541 15 H 0.080 0.920 16 C -0.177 4.177 17 N -0.545 5.545 18 Si 0.773 3.227 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.216 1.216 22 C -0.203 4.203 23 C -0.209 4.209 24 C -0.136 4.136 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.245 0.755 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.195 -19.955 -2.624 20.246 hybrid contribution -0.688 1.311 0.429 1.541 sum -2.884 -18.644 -2.195 18.993 Atomic orbital electron populations 1.21843 0.95948 1.01792 1.01766 1.21519 0.95846 0.95242 1.02499 1.21222 0.95388 0.96563 0.97661 0.92474 1.21595 1.01196 0.93103 0.98253 1.21472 0.92100 0.99093 1.01853 1.21339 0.97972 0.90128 1.01932 0.86534 1.21536 0.76693 0.89850 0.82956 1.90624 1.52712 1.71650 1.33282 1.45988 1.68442 1.11668 1.08979 1.20576 0.96001 0.80404 0.97464 1.19051 0.90851 0.99795 0.89830 1.20739 1.00973 1.00194 1.32239 0.91957 1.25694 0.99739 0.97560 0.94689 1.70164 1.43478 1.08336 1.32509 0.85688 0.79951 0.78520 0.78581 1.18481 1.20729 1.21613 1.22488 1.00619 0.93865 1.03292 1.22975 1.03153 0.95453 0.99269 1.21328 1.00498 0.96445 0.95292 1.21561 0.95223 0.94382 1.02995 0.93374 0.92206 0.92458 0.91681 0.91106 0.90857 0.90145 0.91463 0.93641 0.75465 0.95431 0.95394 0.93240 0.91226 0.91740 0.89223 0.88968 0.93419 0.92345 0.90951 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.67 71.98 0.70 -1.33 16 2 C -0.11 -1.48 5.40 30.59 0.17 -1.31 16 3 C -0.09 -1.49 2.19 -10.79 -0.02 -1.52 16 4 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.10 -1.82 4.96 30.59 0.15 -1.67 16 6 C -0.11 -2.61 5.19 30.60 0.16 -2.45 16 7 C -0.09 -2.41 2.52 -11.54 -0.03 -2.44 16 8 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 9 C 0.50 18.77 6.99 87.66 0.61 19.38 16 10 O -0.60 -28.11 16.04 -3.04 -0.05 -28.16 16 11 N -0.70 -26.73 5.52 -463.05 -2.56 -29.29 16 12 C 0.18 8.48 5.56 86.38 0.48 8.96 16 13 C 0.01 0.26 1.32 -52.92 -0.07 0.19 16 14 C -0.50 -26.09 8.81 25.60 0.23 -25.87 16 15 H 0.06 3.13 7.83 -2.91 -0.02 3.11 16 16 C 0.02 1.28 5.37 84.65 0.45 1.73 16 17 N -0.91 -52.17 13.07 21.45 0.28 -51.89 16 18 Si 0.95 42.60 29.55 68.60 2.03 44.63 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 C -0.16 -7.44 9.54 30.60 0.29 -7.15 16 23 C -0.17 -6.61 9.85 30.59 0.30 -6.31 16 24 C -0.10 -2.40 4.67 30.59 0.14 -2.25 16 25 C -0.10 -1.78 5.21 30.60 0.16 -1.62 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.75 6.57 -2.39 -0.02 0.73 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 1.21 6.57 -2.39 -0.02 1.19 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.41 13.30 8.42 -92.71 -0.78 12.52 16 36 H 0.03 1.31 7.95 -2.38 -0.02 1.30 16 37 H 0.03 1.57 8.12 -2.39 -0.02 1.55 16 38 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 39 H 0.07 3.04 8.08 -2.38 -0.02 3.02 16 40 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.05 1.40 7.90 -2.38 -0.02 1.38 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -64.80 364.63 3.57 -61.23 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.15 Total: 27.12 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.72 Total: -23.64 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.27 Total: -81.18 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -64.80 3.57 -61.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404121318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.340 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds