Wall clock time and date at job start Tue Mar 31 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 C 1.52998 * 109.47399 * 239.99497 * 2 1 3 5 5 C 1.50702 * 109.46978 * 60.00135 * 4 2 1 6 6 O 1.21285 * 120.00194 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46918 * 120.62993 * 359.72716 * 7 5 4 9 9 C 1.52768 * 109.00704 * 233.57649 * 8 7 5 10 10 C 1.53035 * 109.38551 * 305.59012 * 9 8 7 11 11 C 1.50694 * 109.45331 * 181.25282 * 10 9 8 12 12 H 1.07999 * 120.00322 * 239.94002 * 11 10 9 13 13 C 1.37879 * 120.00027 * 59.93420 * 11 10 9 14 14 N 1.31515 * 119.99784 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47059 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47084 * 119.99933 * 15 13 11 18 18 H 1.48498 * 109.47257 * 240.00106 * 15 13 11 19 19 C 1.53045 * 109.53768 * 61.23374 * 10 9 8 20 20 C 1.46932 * 120.62888 * 179.97438 * 7 5 4 21 21 C 1.53006 * 109.47040 * 119.99342 * 2 1 3 22 22 C 1.53000 * 117.49776 * 300.00346 * 21 2 1 23 23 C 1.52997 * 117.49537 * 8.62800 * 21 2 1 24 24 H 1.08996 * 109.47419 * 300.00798 * 1 2 3 25 25 H 1.09001 * 109.46938 * 60.00855 * 1 2 3 26 26 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47222 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.46434 * 299.99730 * 3 2 1 29 29 H 1.08991 * 109.47137 * 59.99156 * 3 2 1 30 30 H 1.08998 * 109.47042 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47170 * 300.00114 * 4 2 1 32 32 H 1.09002 * 109.59402 * 353.41013 * 8 7 5 33 33 H 1.09002 * 109.59149 * 113.84165 * 8 7 5 34 34 H 1.09003 * 109.56309 * 185.54877 * 9 8 7 35 35 H 1.09004 * 109.38395 * 65.51439 * 9 8 7 36 36 H 1.09008 * 109.45871 * 301.21764 * 10 9 8 37 37 H 0.96997 * 119.99847 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.49490 * 178.68509 * 19 10 9 39 39 H 1.09000 * 109.51827 * 58.60697 * 19 10 9 40 40 H 1.08997 * 109.58650 * 246.15996 * 20 7 5 41 41 H 1.08994 * 109.58486 * 6.44729 * 20 7 5 42 42 H 1.09002 * 115.56020 * 154.30929 * 21 2 1 43 43 H 1.08990 * 117.49990 * 359.97438 * 22 21 2 44 44 H 1.09004 * 117.49237 * 214.97568 * 22 21 2 45 45 H 1.08999 * 117.49685 * 145.02116 * 23 21 2 46 46 H 1.08997 * 117.50044 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8638 -0.4712 -3.7037 8 6 2.7129 -1.6607 -3.8545 9 6 3.8939 -1.3173 -4.7606 10 6 3.3719 -0.7458 -6.0808 11 6 4.5345 -0.4352 -6.9878 12 1 4.6943 0.5752 -7.3342 13 6 5.3944 -1.4409 -7.3755 14 7 5.1996 -2.6713 -6.9540 15 14 6.8360 -1.0557 -8.4992 16 1 6.8339 0.3924 -8.8283 17 1 8.1057 -1.4050 -7.8129 18 1 6.7147 -1.8480 -9.7493 19 6 2.5821 0.5362 -5.8069 20 6 1.3813 0.2102 -4.9128 21 6 2.0399 -0.7211 1.2494 22 6 1.6356 -0.1493 2.6097 23 6 1.0103 -1.4540 2.1117 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8898 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2491 32 1 3.0824 -1.9723 -2.8775 33 1 2.1345 -2.4682 -4.3033 34 1 4.4759 -2.2174 -4.9586 35 1 4.5247 -0.5772 -4.2680 36 1 2.7218 -1.4771 -6.5613 37 1 5.8043 -3.3789 -7.2270 38 1 2.2304 0.9552 -6.7497 39 1 3.2245 1.2593 -5.3044 40 1 0.6922 -0.4419 -5.4493 41 1 0.8700 1.1314 -4.6335 42 1 3.0322 -1.1643 1.1645 43 1 1.0066 0.7408 2.6145 44 1 2.3619 -0.2163 3.4197 45 1 1.3252 -2.3792 2.5943 46 1 -0.0304 -1.4220 1.7893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405770330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:17 Heat of formation + Delta-G solvation = -28.544487 kcal Electronic energy + Delta-G solvation = -22923.285355 eV Core-core repulsion = 19812.950847 eV Total energy + Delta-G solvation = -3110.334507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25295 -38.52129 -36.77718 -33.58367 -33.47451 -31.37534 -30.12421 -28.04316 -27.23280 -25.95820 -23.68232 -22.73503 -22.29543 -22.14085 -19.89786 -18.47532 -18.01926 -17.04329 -16.29285 -15.73323 -15.41295 -15.15175 -14.55711 -14.45714 -13.73781 -13.59814 -13.23540 -13.11898 -12.88045 -12.69403 -12.47902 -12.22998 -11.74053 -11.64835 -11.59459 -11.32653 -11.19511 -10.99626 -10.93717 -10.87312 -10.66198 -10.60732 -10.40325 -10.27679 -10.10429 -9.87185 -9.63165 -9.18208 -9.10682 -8.89475 -8.39899 -7.96390 -6.05362 -4.11310 3.02139 3.25715 3.34403 3.38530 3.48782 3.75547 4.39315 4.56816 4.73330 4.85959 4.93479 5.13372 5.17850 5.24392 5.34400 5.49462 5.53234 5.61519 5.70806 5.78452 5.80371 5.82387 5.88446 5.95985 6.00963 6.05000 6.08643 6.13011 6.15127 6.21950 6.29990 6.36080 6.45144 6.59898 6.61695 6.69519 6.90594 7.03266 7.15441 7.26623 7.65059 7.89977 7.97046 8.02418 8.38404 8.63077 8.92446 9.54017 11.00192 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003811 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.406595 B = 7344.902768 C = 7724.425781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.013 4.013 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.513 3.487 6 O -0.552 6.552 7 N -0.601 5.601 8 C 0.103 3.897 9 C -0.125 4.125 10 C 0.048 3.952 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.123 4.123 20 C 0.111 3.889 21 C -0.142 4.142 22 C -0.178 4.178 23 C -0.186 4.186 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 1.219 14.652 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 C -0.207 4.207 4 C -0.168 4.168 5 C 0.302 3.698 6 O -0.432 6.432 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.163 4.163 10 C 0.030 3.970 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.161 4.161 20 C -0.011 4.011 21 C -0.160 4.160 22 C -0.215 4.215 23 C -0.223 4.223 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.065 1.545 14.669 16.355 hybrid contribution 1.080 -0.118 -0.600 1.241 sum -5.985 1.427 14.069 15.356 Atomic orbital electron populations 1.22210 0.94370 1.01249 1.03312 1.19738 0.95794 0.95011 0.90803 1.22069 1.00136 0.95232 1.03235 1.21730 1.02325 1.00329 0.92429 1.20531 0.80237 0.84459 0.84592 1.90501 1.39542 1.27051 1.86146 1.48288 1.49951 1.29488 1.05525 1.21951 0.93311 0.86176 1.00479 1.21944 0.95237 1.03472 0.95669 1.18633 0.94479 0.91302 0.92589 1.21251 1.10656 0.94687 1.28329 0.92671 1.24958 0.97780 0.95062 0.96175 1.69843 1.37968 1.00204 1.45092 0.86565 0.82515 0.78470 0.80635 1.19832 1.21058 1.21045 1.22005 0.95802 1.00757 0.97545 1.21679 0.97144 0.97121 0.85144 1.22389 0.99165 1.03104 0.91382 1.22896 1.03868 0.97547 0.97225 1.23137 0.99279 0.95720 1.04146 0.93376 0.89501 0.93338 0.93558 0.89549 0.93374 0.89040 0.89222 0.91429 0.92037 0.87767 0.94315 0.95495 0.93042 0.92252 0.93013 0.92407 0.90357 0.87974 0.88871 0.89235 0.89313 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 6.77 37.15 0.25 -1.66 16 2 C -0.01 -0.16 0.62 -154.51 -0.10 -0.25 16 3 C -0.15 -1.96 8.02 37.16 0.30 -1.66 16 4 C -0.13 -1.69 3.10 -27.88 -0.09 -1.77 16 5 C 0.51 8.45 7.11 -10.98 -0.08 8.37 16 6 O -0.55 -10.07 10.76 5.55 0.06 -10.01 16 7 N -0.60 -10.50 2.98 -173.01 -0.52 -11.01 16 8 C 0.10 1.79 6.31 -3.93 -0.02 1.77 16 9 C -0.12 -2.70 5.14 -26.83 -0.14 -2.84 16 10 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 11 C -0.51 -13.52 8.56 -34.44 -0.29 -13.82 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -24.21 11.31 55.43 0.63 -23.58 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 C -0.12 -2.50 5.30 -26.59 -0.14 -2.64 16 20 C 0.11 2.01 6.44 -3.69 -0.02 1.99 16 21 C -0.14 -1.48 5.15 -90.62 -0.47 -1.95 16 22 C -0.18 -1.68 9.38 -26.73 -0.25 -1.93 16 23 C -0.19 -1.74 9.57 -26.73 -0.26 -2.00 16 24 H 0.05 0.54 7.07 -51.93 -0.37 0.18 16 25 H 0.09 1.29 5.51 -51.93 -0.29 1.00 16 26 H 0.05 0.55 6.97 -51.93 -0.36 0.19 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.35 5.51 -51.92 -0.29 1.06 16 29 H 0.05 0.57 7.29 -51.93 -0.38 0.19 16 30 H 0.09 1.16 7.68 -51.93 -0.40 0.76 16 31 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 32 H 0.07 1.00 5.94 -51.93 -0.31 0.69 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 42 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 43 H 0.09 0.89 7.07 -51.93 -0.37 0.52 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.94 5.85 -51.93 -0.30 0.64 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -27.42 342.06 -9.20 -36.62 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.92 Total: 3.03 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.59 Total: -15.90 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.11 Total: -34.59 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.06 Total: -10.01 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.42 -9.20 -36.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405770330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.080 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds