Wall clock time and date at job start Tue Mar 31 2020 01:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 C 1.52998 * 109.47399 * 239.99497 * 2 1 3 5 5 C 1.50702 * 109.46978 * 60.00135 * 4 2 1 6 6 O 1.21285 * 120.00194 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46918 * 120.62993 * 359.72716 * 7 5 4 9 9 C 1.52768 * 109.00704 * 233.57649 * 8 7 5 10 10 C 1.53035 * 109.38551 * 305.59012 * 9 8 7 11 11 C 1.50694 * 109.45331 * 181.25282 * 10 9 8 12 12 H 1.07999 * 120.00322 * 239.94002 * 11 10 9 13 13 C 1.37879 * 120.00027 * 59.93420 * 11 10 9 14 14 N 1.31515 * 119.99784 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47059 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47084 * 119.99933 * 15 13 11 18 18 H 1.48498 * 109.47257 * 240.00106 * 15 13 11 19 19 C 1.53045 * 109.53768 * 61.23374 * 10 9 8 20 20 C 1.46932 * 120.62888 * 179.97438 * 7 5 4 21 21 C 1.53006 * 109.47040 * 119.99342 * 2 1 3 22 22 C 1.53000 * 117.49776 * 300.00346 * 21 2 1 23 23 C 1.52997 * 117.49537 * 8.62800 * 21 2 1 24 24 H 1.08996 * 109.47419 * 300.00798 * 1 2 3 25 25 H 1.09001 * 109.46938 * 60.00855 * 1 2 3 26 26 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47222 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.46434 * 299.99730 * 3 2 1 29 29 H 1.08991 * 109.47137 * 59.99156 * 3 2 1 30 30 H 1.08998 * 109.47042 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47170 * 300.00114 * 4 2 1 32 32 H 1.09002 * 109.59402 * 353.41013 * 8 7 5 33 33 H 1.09002 * 109.59149 * 113.84165 * 8 7 5 34 34 H 1.09003 * 109.56309 * 185.54877 * 9 8 7 35 35 H 1.09004 * 109.38395 * 65.51439 * 9 8 7 36 36 H 1.09008 * 109.45871 * 301.21764 * 10 9 8 37 37 H 0.96997 * 119.99847 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.49490 * 178.68509 * 19 10 9 39 39 H 1.09000 * 109.51827 * 58.60697 * 19 10 9 40 40 H 1.08997 * 109.58650 * 246.15996 * 20 7 5 41 41 H 1.08994 * 109.58486 * 6.44729 * 20 7 5 42 42 H 1.09002 * 115.56020 * 154.30929 * 21 2 1 43 43 H 1.08990 * 117.49990 * 359.97438 * 22 21 2 44 44 H 1.09004 * 117.49237 * 214.97568 * 22 21 2 45 45 H 1.08999 * 117.49685 * 145.02116 * 23 21 2 46 46 H 1.08997 * 117.50044 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8638 -0.4712 -3.7037 8 6 2.7129 -1.6607 -3.8545 9 6 3.8939 -1.3173 -4.7606 10 6 3.3719 -0.7458 -6.0808 11 6 4.5345 -0.4352 -6.9878 12 1 4.6943 0.5752 -7.3342 13 6 5.3944 -1.4409 -7.3755 14 7 5.1996 -2.6713 -6.9540 15 14 6.8360 -1.0557 -8.4992 16 1 6.8339 0.3924 -8.8283 17 1 8.1057 -1.4050 -7.8129 18 1 6.7147 -1.8480 -9.7493 19 6 2.5821 0.5362 -5.8069 20 6 1.3813 0.2102 -4.9128 21 6 2.0399 -0.7211 1.2494 22 6 1.6356 -0.1493 2.6097 23 6 1.0103 -1.4540 2.1117 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8898 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2491 32 1 3.0824 -1.9723 -2.8775 33 1 2.1345 -2.4682 -4.3033 34 1 4.4759 -2.2174 -4.9586 35 1 4.5247 -0.5772 -4.2680 36 1 2.7218 -1.4771 -6.5613 37 1 5.8043 -3.3789 -7.2270 38 1 2.2304 0.9552 -6.7497 39 1 3.2245 1.2593 -5.3044 40 1 0.6922 -0.4419 -5.4493 41 1 0.8700 1.1314 -4.6335 42 1 3.0322 -1.1643 1.1645 43 1 1.0066 0.7408 2.6145 44 1 2.3619 -0.2163 3.4197 45 1 1.3252 -2.3792 2.5943 46 1 -0.0304 -1.4220 1.7893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405770330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:16 Heat of formation + Delta-G solvation = -40.827888 kcal Electronic energy + Delta-G solvation = -22923.818003 eV Core-core repulsion = 19812.950847 eV Total energy + Delta-G solvation = -3110.867156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48467 -39.62236 -38.20937 -35.32421 -34.48561 -33.10273 -31.72885 -29.29336 -28.22316 -27.67633 -24.94468 -24.21687 -23.60854 -22.99443 -21.45990 -19.77843 -19.13664 -18.57993 -17.95422 -16.75420 -16.71511 -16.49252 -16.33959 -15.51103 -14.91757 -14.86150 -14.73933 -14.61054 -14.32139 -14.05274 -13.99041 -13.35169 -13.24254 -13.05742 -12.85824 -12.68002 -12.51837 -12.39096 -12.19666 -12.13214 -12.00590 -11.85693 -11.79882 -11.60543 -11.43351 -11.08309 -10.98759 -10.80788 -10.68599 -10.43073 -10.28039 -9.45016 -8.07938 -6.20964 1.39969 1.43487 1.53288 1.72833 2.16486 2.44182 2.99540 3.18634 3.56563 3.76096 3.98328 4.05184 4.16445 4.23875 4.29118 4.34079 4.37468 4.44402 4.50565 4.59170 4.63253 4.69493 4.76462 4.82773 4.86870 4.89443 4.91134 5.00341 5.07712 5.14901 5.16301 5.20166 5.20783 5.27811 5.36338 5.42535 5.45657 5.57389 5.58156 5.62155 5.71986 5.99560 6.15267 6.40029 6.61414 6.88632 7.31152 7.46808 8.95561 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003811 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.406595 B = 7344.902768 C = 7724.425781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.010 4.010 3 C -0.147 4.147 4 C -0.125 4.125 5 C 0.510 3.490 6 O -0.569 6.569 7 N -0.607 5.607 8 C 0.115 3.885 9 C -0.116 4.116 10 C 0.045 3.955 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.019 3.981 14 N -0.911 5.911 15 Si 0.948 3.052 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.113 4.113 20 C 0.118 3.882 21 C -0.150 4.150 22 C -0.176 4.176 23 C -0.180 4.180 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.027 0.973 36 H 0.003 0.997 37 H 0.262 0.738 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 0.612 16.298 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 C -0.204 4.204 4 C -0.165 4.165 5 C 0.300 3.700 6 O -0.451 6.451 7 N -0.339 5.339 8 C -0.008 4.008 9 C -0.154 4.154 10 C 0.027 3.973 11 C -0.573 4.573 12 H 0.063 0.937 13 C -0.180 4.180 14 N -0.550 5.550 15 Si 0.774 3.226 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.151 4.151 20 C -0.005 4.005 21 C -0.168 4.168 22 C -0.213 4.213 23 C -0.217 4.217 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.015 0.943 16.327 17.795 hybrid contribution 1.038 0.120 -1.120 1.531 sum -5.977 1.063 15.207 16.374 Atomic orbital electron populations 1.22131 0.94569 1.01579 1.02352 1.19696 0.95569 0.94434 0.91357 1.22007 1.00156 0.95943 1.02279 1.21802 1.02778 1.00950 0.90930 1.21153 0.79645 0.84207 0.84981 1.90517 1.40256 1.27908 1.86391 1.48339 1.50248 1.29588 1.05752 1.21802 0.91658 0.86091 1.01203 1.21710 0.96495 1.01695 0.95525 1.18604 0.93584 0.92100 0.93014 1.21575 1.11994 0.94381 1.29349 0.93663 1.25613 0.99958 0.95025 0.97428 1.69947 1.38684 1.00712 1.45692 0.85665 0.79786 0.78146 0.78990 1.19801 1.20529 1.20663 1.21847 0.96217 0.98912 0.98143 1.21531 0.96045 0.97618 0.85310 1.22300 0.99808 1.03908 0.90831 1.22960 1.03949 0.97569 0.96819 1.23194 0.98908 0.96204 1.03361 0.92540 0.92189 0.92326 0.93409 0.92342 0.92422 0.88163 0.87313 0.88151 0.91743 0.90228 0.95428 0.97934 0.92911 0.92129 0.94136 0.91584 0.90130 0.87311 0.89168 0.88075 0.88075 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 6.77 71.98 0.49 -2.95 16 2 C -0.01 -0.23 0.62 -52.18 -0.03 -0.26 16 3 C -0.15 -3.67 8.02 71.98 0.58 -3.09 16 4 C -0.13 -3.00 3.10 29.85 0.09 -2.90 16 5 C 0.51 16.13 7.11 87.66 0.62 16.76 16 6 O -0.57 -20.51 10.76 -3.05 -0.03 -20.55 16 7 N -0.61 -20.58 2.98 -819.66 -2.44 -23.02 16 8 C 0.11 3.84 6.31 86.22 0.54 4.39 16 9 C -0.12 -5.02 5.14 30.53 0.16 -4.86 16 10 C 0.05 2.18 2.07 -11.51 -0.02 2.15 16 11 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 12 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 13 C 0.02 1.00 5.30 84.66 0.45 1.45 16 14 N -0.91 -49.85 11.31 21.45 0.24 -49.61 16 15 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.11 -4.65 5.30 30.68 0.16 -4.49 16 20 C 0.12 4.21 6.44 86.37 0.56 4.77 16 21 C -0.15 -2.70 5.15 -10.79 -0.06 -2.75 16 22 C -0.18 -2.80 9.38 30.60 0.29 -2.52 16 23 C -0.18 -2.80 9.57 30.60 0.29 -2.50 16 24 H 0.06 1.17 7.07 -2.39 -0.02 1.16 16 25 H 0.06 1.73 5.51 -2.39 -0.01 1.72 16 26 H 0.06 1.21 6.97 -2.39 -0.02 1.19 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.80 5.51 -2.38 -0.01 1.79 16 29 H 0.06 1.29 7.29 -2.39 -0.02 1.27 16 30 H 0.10 2.27 7.68 -2.39 -0.02 2.25 16 31 H 0.11 2.23 7.95 -2.39 -0.02 2.21 16 32 H 0.10 2.71 5.94 -2.39 -0.01 2.69 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 3.88 6.03 -2.39 -0.01 3.87 16 35 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 37 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 42 H 0.11 1.84 8.11 -2.39 -0.02 1.82 16 43 H 0.09 1.49 7.07 -2.39 -0.02 1.48 16 44 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 1.57 5.85 -2.39 -0.01 1.56 16 Total: -1.00 -59.01 342.06 5.07 -53.94 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.94 Total: 19.96 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.34 Total: -25.42 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -2.20 Total: -72.62 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.03 Total: -20.55 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -59.01 5.07 -53.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405770330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.112 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds