Wall clock time and date at job start Tue Mar 31 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 C 1.52998 * 109.47399 * 239.99497 * 2 1 3 5 5 C 1.50702 * 109.46978 * 60.00135 * 4 2 1 6 6 O 1.21285 * 120.00194 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46928 * 120.63268 * 0.02562 * 7 5 4 9 9 C 1.53191 * 108.77679 * 126.36168 * 8 7 5 10 10 C 1.53040 * 109.31306 * 54.63616 * 9 8 7 11 11 C 1.53041 * 109.53775 * 298.63432 * 10 9 8 12 12 H 1.09003 * 109.49557 * 301.41831 * 11 10 9 13 13 C 1.50694 * 109.49986 * 181.34819 * 11 10 9 14 14 H 1.08000 * 120.00453 * 239.99763 * 13 11 10 15 15 C 1.37882 * 119.99942 * 59.99884 * 13 11 10 16 16 N 1.31518 * 120.00088 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00189 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47303 * 89.99875 * 17 15 13 19 19 H 1.48501 * 109.47526 * 210.00089 * 17 15 13 20 20 H 1.48503 * 109.47216 * 329.99800 * 17 15 13 21 21 C 1.46928 * 120.62867 * 179.71839 * 7 5 4 22 22 C 1.53006 * 109.47040 * 119.99342 * 2 1 3 23 23 C 1.53000 * 117.49776 * 300.00346 * 22 2 1 24 24 C 1.52997 * 117.49537 * 8.62800 * 22 2 1 25 25 H 1.08996 * 109.47419 * 300.00798 * 1 2 3 26 26 H 1.09001 * 109.46938 * 60.00855 * 1 2 3 27 27 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47222 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46434 * 299.99730 * 3 2 1 30 30 H 1.08991 * 109.47137 * 59.99156 * 3 2 1 31 31 H 1.08998 * 109.47042 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47170 * 300.00114 * 4 2 1 33 33 H 1.08997 * 109.58316 * 246.15103 * 8 7 5 34 34 H 1.09001 * 109.58437 * 6.43336 * 8 7 5 35 35 H 1.09000 * 109.49475 * 174.58443 * 9 8 7 36 36 H 1.08999 * 109.49703 * 294.68459 * 9 8 7 37 37 H 1.09004 * 109.45873 * 58.65143 * 10 9 8 38 38 H 1.08994 * 109.46357 * 178.61217 * 10 9 8 39 39 H 0.96992 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.58655 * 353.42164 * 21 7 5 41 41 H 1.08997 * 109.58606 * 113.85171 * 21 7 5 42 42 H 1.09002 * 115.56020 * 154.30929 * 22 2 1 43 43 H 1.08990 * 117.49990 * 359.97438 * 23 22 2 44 44 H 1.09004 * 117.49237 * 214.97568 * 23 22 2 45 45 H 1.08999 * 117.49685 * 145.02116 * 24 22 2 46 46 H 1.08999 * 117.52022 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8638 -0.4712 -3.7037 8 6 2.7076 -1.6646 -3.8546 9 6 1.9865 -2.6671 -4.7611 10 6 1.6217 -1.9843 -6.0813 11 6 0.6754 -0.8131 -5.8074 12 1 -0.2202 -1.1788 -5.3049 13 6 0.2905 -0.1620 -7.1108 14 1 0.5232 0.8782 -7.2843 15 6 -0.3588 -0.8943 -8.0820 16 7 -0.6419 -2.1613 -7.8710 17 14 -0.8353 -0.0875 -9.6979 18 1 0.2731 -0.2419 -10.6740 19 1 -2.0597 -0.7356 -10.2327 20 1 -1.0982 1.3565 -9.4716 21 6 1.3767 0.2069 -4.9127 22 6 2.0399 -0.7211 1.2494 23 6 1.6356 -0.1493 2.6097 24 6 1.0103 -1.4540 2.1117 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8898 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7490 -1.2491 33 1 3.6599 -1.3841 -4.3047 34 1 2.8836 -2.1135 -2.8770 35 1 2.6418 -3.5153 -4.9591 36 1 1.0786 -3.0152 -4.2685 37 1 2.5277 -1.6144 -6.5613 38 1 1.1303 -2.7023 -6.7378 39 1 -1.0990 -2.6763 -8.5540 40 1 0.6727 0.9908 -4.6334 41 1 2.2180 0.6432 -5.4510 42 1 3.0322 -1.1643 1.1645 43 1 1.0066 0.7408 2.6145 44 1 2.3619 -0.2163 3.4197 45 1 1.3252 -2.3792 2.5943 46 1 -0.0305 -1.4222 1.7896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405804318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:42 Heat of formation + Delta-G solvation = -27.790444 kcal Electronic energy + Delta-G solvation = -22989.628967 eV Core-core repulsion = 19879.327158 eV Total energy + Delta-G solvation = -3110.301810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20496 -38.49602 -36.73616 -33.55348 -33.44104 -31.36784 -30.34146 -27.96379 -27.19515 -25.08366 -24.45785 -23.13015 -22.28571 -21.66945 -19.89806 -18.42751 -18.03782 -16.97710 -16.28513 -15.78048 -15.21045 -15.07983 -14.69412 -14.29291 -13.73130 -13.49875 -13.41391 -13.23004 -12.84205 -12.76196 -12.26309 -12.19977 -11.98911 -11.68251 -11.58013 -11.20134 -11.03855 -10.96487 -10.87833 -10.79236 -10.72737 -10.65088 -10.35335 -10.20328 -9.95865 -9.86398 -9.75207 -9.42150 -9.02411 -8.79051 -8.38553 -7.85140 -6.02371 -4.09486 3.09496 3.29206 3.36171 3.39762 3.55704 3.76280 4.42075 4.57130 4.73694 4.86631 4.93167 5.13209 5.19695 5.26448 5.33307 5.38000 5.53364 5.55182 5.63844 5.67342 5.78455 5.80138 5.81883 5.91503 6.00398 6.06187 6.10924 6.17193 6.24274 6.32749 6.35128 6.42733 6.49422 6.61786 6.66513 6.72603 6.83656 7.01854 7.18168 7.34049 7.68773 7.92319 8.05798 8.08051 8.37651 8.72351 8.94508 9.55459 11.03104 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.003867 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.856602 B = 7239.115500 C = 7506.623086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.149 4.149 4 C -0.128 4.128 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.604 5.604 8 C 0.109 3.891 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.514 4.514 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.117 3.883 22 C -0.142 4.142 23 C -0.179 4.179 24 C -0.186 4.186 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -0.673 16.054 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.014 4.014 3 C -0.206 4.206 4 C -0.168 4.168 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.336 5.336 8 C -0.014 4.014 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.020 3.980 12 H 0.046 0.954 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.004 4.004 22 C -0.160 4.160 23 C -0.216 4.216 24 C -0.223 4.223 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.868 -0.302 16.007 17.421 hybrid contribution -0.097 0.066 -0.902 0.909 sum 6.770 -0.236 15.106 16.555 Atomic orbital electron populations 1.22220 0.94158 1.01446 1.03461 1.19738 0.96006 0.94921 0.90695 1.22069 0.99822 0.95341 1.03401 1.21737 1.01774 1.00518 0.92797 1.20491 0.80460 0.84716 0.84468 1.90525 1.38752 1.27078 1.85959 1.48344 1.50162 1.28602 1.06472 1.21736 0.93575 0.86235 0.99892 1.22000 0.99566 0.97052 0.98703 1.21628 0.98676 1.00411 0.94324 1.18882 0.93825 0.91542 0.93704 0.95362 1.21080 1.37472 0.96882 0.99799 0.92506 1.24938 0.95502 0.94868 0.98516 1.69871 1.41281 1.07300 1.34330 0.86581 0.77972 0.79660 0.83726 1.20704 1.21246 1.19848 1.21871 0.98248 0.96772 0.83476 1.22377 0.99025 1.03168 0.91447 1.22897 1.03875 0.97659 0.97125 1.23145 0.99427 0.95643 1.04043 0.93373 0.89299 0.93241 0.93769 0.89456 0.93335 0.89526 0.89211 0.92052 0.91129 0.92527 0.92406 0.94639 0.88661 0.92991 0.90303 0.92911 0.88144 0.88827 0.89290 0.89345 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 6.77 37.15 0.25 -1.84 16 2 C -0.01 -0.16 0.62 -154.51 -0.10 -0.26 16 3 C -0.15 -1.93 8.02 37.16 0.30 -1.63 16 4 C -0.13 -1.65 3.10 -27.88 -0.09 -1.74 16 5 C 0.51 8.77 7.11 -10.98 -0.08 8.69 16 6 O -0.54 -10.78 10.76 5.55 0.06 -10.72 16 7 N -0.60 -10.93 2.98 -173.04 -0.52 -11.44 16 8 C 0.11 1.66 6.35 -3.71 -0.02 1.63 16 9 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 10 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 11 C 0.04 0.97 2.23 -91.89 -0.21 0.76 16 12 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.51 -13.88 8.57 -34.44 -0.30 -14.18 16 14 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -24.90 11.31 55.43 0.63 -24.27 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.12 2.52 5.63 -3.95 -0.02 2.50 16 22 C -0.14 -1.45 5.15 -90.62 -0.47 -1.91 16 23 C -0.18 -1.67 9.38 -26.73 -0.25 -1.92 16 24 C -0.19 -1.77 9.57 -26.73 -0.26 -2.02 16 25 H 0.05 0.59 7.07 -51.93 -0.37 0.22 16 26 H 0.09 1.47 5.51 -51.93 -0.29 1.19 16 27 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.37 5.51 -51.92 -0.29 1.08 16 30 H 0.05 0.57 7.29 -51.93 -0.38 0.20 16 31 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 32 H 0.09 1.09 7.70 -51.93 -0.40 0.69 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 1.81 7.01 -51.93 -0.36 1.45 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 43 H 0.09 0.90 7.07 -51.93 -0.37 0.54 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.01 5.85 -51.93 -0.30 0.71 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -28.53 342.07 -9.23 -37.76 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.92 Total: 2.93 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.62 Total: -15.46 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.11 Total: -35.72 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.06 Total: -10.72 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.53 -9.23 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405804318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.972 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds