Wall clock time and date at job start Tue Mar 31 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53006 * 109.46907 * 119.99790 * 2 1 3 5 5 C 1.50702 * 109.46708 * 300.00017 * 4 2 1 6 6 O 1.21280 * 120.00608 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99526 * 180.02562 * 5 4 2 8 8 C 1.46919 * 120.63188 * 359.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.51696 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 12 12 H 1.09001 * 109.49731 * 58.65147 * 11 10 9 13 13 C 1.50701 * 109.49979 * 178.74890 * 11 10 9 14 14 H 1.07998 * 120.00510 * 119.83657 * 13 11 10 15 15 C 1.37883 * 119.99969 * 299.84147 * 13 11 10 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00176 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46665 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47103 * 119.99654 * 17 15 13 20 20 H 1.48496 * 109.47081 * 240.00070 * 17 15 13 21 21 C 1.46928 * 120.62829 * 179.97438 * 7 5 4 22 22 C 1.52991 * 109.47445 * 239.99659 * 2 1 3 23 23 C 1.52996 * 117.50071 * 128.74905 * 22 2 1 24 24 C 1.53005 * 117.50052 * 60.08728 * 22 2 1 25 25 H 1.09005 * 109.47315 * 300.00778 * 1 2 3 26 26 H 1.09006 * 109.47110 * 60.00351 * 1 2 3 27 27 H 1.08994 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46844 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47129 * 299.99426 * 3 2 1 30 30 H 1.08994 * 109.47179 * 59.99594 * 3 2 1 31 31 H 1.08996 * 109.47105 * 180.02562 * 4 2 1 32 32 H 1.08994 * 109.47182 * 59.99855 * 4 2 1 33 33 H 1.09002 * 109.58751 * 353.37646 * 8 7 5 34 34 H 1.08996 * 109.58750 * 113.65831 * 8 7 5 35 35 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 36 36 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 37 37 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 38 38 H 1.09000 * 109.44413 * 181.23506 * 10 9 8 39 39 H 0.97000 * 119.99929 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.58787 * 246.20220 * 21 7 5 41 41 H 1.09007 * 109.58600 * 6.48533 * 21 7 5 42 42 H 1.09003 * 115.54926 * 274.41711 * 22 2 1 43 43 H 1.09000 * 117.50044 * 359.97438 * 23 22 2 44 44 H 1.09002 * 117.50079 * 145.02228 * 23 22 2 45 45 H 1.08991 * 117.49929 * 214.98131 * 24 22 2 46 46 H 1.08997 * 117.49329 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5375 -0.0107 2.4797 6 8 0.8407 0.9756 2.3684 7 7 1.8635 -0.4709 3.7039 8 6 2.7072 -1.6641 3.8549 9 6 1.9897 -2.6672 4.7636 10 6 1.6226 -1.9824 6.0824 11 6 0.6764 -0.8113 5.8084 12 1 -0.2196 -1.1771 5.3068 13 6 0.2930 -0.1588 7.1116 14 1 0.5285 0.8809 7.2850 15 6 -0.3585 -0.8891 8.0829 16 7 -0.6457 -2.1550 7.8718 17 14 -0.8331 -0.0806 9.6986 18 1 -0.3998 1.3398 9.6873 19 1 -2.3064 -0.1478 9.8718 20 1 -0.1697 -0.7910 10.8213 21 6 1.3818 0.2114 4.9128 22 6 2.0400 -0.7213 -1.2491 23 6 3.0764 0.0038 -2.1099 24 6 1.6375 -0.1484 -2.6096 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 2.8805 -2.1151 2.8778 34 1 3.6608 -1.3832 4.3019 35 1 1.0818 -3.0179 4.2730 36 1 2.6471 -3.5139 4.9614 37 1 2.5290 -1.6124 6.5618 38 1 1.1314 -2.7001 6.7395 39 1 -1.1044 -2.6688 8.5549 40 1 2.2261 0.6451 5.4485 41 1 0.6824 0.9994 4.6335 42 1 2.1253 -1.8047 -1.1645 43 1 3.3945 0.9950 -1.7866 44 1 3.8432 -0.6025 -2.5920 45 1 1.4584 -0.8549 -3.4200 46 1 1.0089 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405804320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:46 Heat of formation + Delta-G solvation = -27.881270 kcal Electronic energy + Delta-G solvation = -22972.029985 eV Core-core repulsion = 19861.724236 eV Total energy + Delta-G solvation = -3110.305748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20500 -38.49430 -36.72728 -33.55003 -33.43983 -31.37049 -30.32536 -27.96386 -27.20131 -25.08345 -24.45510 -23.12607 -22.30169 -21.67602 -19.89407 -18.43861 -18.03773 -16.97255 -16.29378 -15.78372 -15.19271 -15.12864 -14.60582 -14.35871 -13.69453 -13.55552 -13.46893 -13.17575 -12.81239 -12.72182 -12.29199 -12.21448 -11.98951 -11.69868 -11.58476 -11.20412 -11.04905 -10.97507 -10.87773 -10.79736 -10.71903 -10.64076 -10.36298 -10.19553 -9.96678 -9.86950 -9.74590 -9.42486 -9.02427 -8.78534 -8.39126 -7.84981 -6.02586 -4.09515 3.09546 3.28324 3.36550 3.40546 3.55586 3.75238 4.42082 4.56766 4.73465 4.85395 4.92653 5.13309 5.17129 5.26462 5.32841 5.40036 5.51368 5.54547 5.63782 5.67236 5.77380 5.79913 5.81825 5.91861 6.00161 6.04246 6.10993 6.16065 6.24862 6.32641 6.35025 6.42434 6.48762 6.61766 6.66593 6.72726 6.82855 7.01325 7.18064 7.33970 7.68916 7.92203 8.05650 8.07721 8.37607 8.72309 8.94683 9.55484 11.02976 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034466 B = 0.003822 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.197695 B = 7323.914309 C = 7643.894007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.155 4.155 4 C -0.128 4.128 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.604 5.604 8 C 0.109 3.891 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.117 3.883 22 C -0.142 4.142 23 C -0.187 4.187 24 C -0.178 4.178 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -0.269 -16.062 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.212 4.212 4 C -0.168 4.168 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.336 5.336 8 C -0.014 4.014 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.004 4.004 22 C -0.160 4.160 23 C -0.223 4.223 24 C -0.215 4.215 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.462 0.104 -16.015 17.668 hybrid contribution -0.145 0.035 0.898 0.910 sum 7.317 0.138 -15.117 16.795 Atomic orbital electron populations 1.22075 0.93781 1.01474 1.03408 1.19737 0.96130 0.94795 0.90694 1.22215 0.99849 0.95672 1.03458 1.21738 1.01918 1.00375 0.92798 1.20491 0.80459 0.84717 0.84468 1.90523 1.38732 1.27102 1.85953 1.48342 1.50281 1.28486 1.06476 1.21726 0.93567 0.86242 0.99889 1.22008 0.99572 0.97044 0.98716 1.21630 0.98667 1.00374 0.94341 1.18958 0.93788 0.91463 0.93697 0.95306 1.21123 1.37283 0.96971 0.99791 0.92450 1.24943 0.95520 0.94863 0.98528 1.69884 1.41201 1.07408 1.34287 0.86529 0.78203 0.79656 0.83587 1.19722 1.21022 1.21060 1.21963 0.98283 0.96702 0.83455 1.22383 1.03373 0.98739 0.91482 1.23149 0.92329 1.02676 1.04176 1.22908 0.98136 1.03305 0.97177 0.89373 0.93357 0.93603 0.93398 0.93347 0.89376 0.89434 0.89301 0.91148 0.92059 0.92420 0.92498 0.94653 0.88703 0.93051 0.92918 0.90302 0.88089 0.88134 0.89373 0.89249 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.02 37.16 0.30 -1.75 16 2 C -0.01 -0.16 0.62 -154.51 -0.10 -0.26 16 3 C -0.16 -1.97 6.77 37.16 0.25 -1.72 16 4 C -0.13 -1.65 3.10 -27.88 -0.09 -1.74 16 5 C 0.51 8.76 7.11 -10.98 -0.08 8.69 16 6 O -0.54 -10.78 10.76 5.56 0.06 -10.72 16 7 N -0.60 -10.92 2.97 -172.79 -0.51 -11.44 16 8 C 0.11 1.66 6.34 -3.71 -0.02 1.63 16 9 C -0.14 -2.37 6.09 -26.59 -0.16 -2.53 16 10 C -0.11 -2.49 4.96 -26.67 -0.13 -2.63 16 11 C 0.04 0.98 2.25 -91.67 -0.21 0.77 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.12 2.51 5.65 -3.73 -0.02 2.49 16 22 C -0.14 -1.44 5.14 -90.62 -0.47 -1.91 16 23 C -0.19 -1.71 9.57 -26.69 -0.26 -1.96 16 24 C -0.18 -1.66 9.39 -26.69 -0.25 -1.91 16 25 H 0.09 1.47 5.51 -51.93 -0.29 1.18 16 26 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.55 6.97 -51.93 -0.36 0.19 16 29 H 0.05 0.56 7.07 -51.93 -0.37 0.20 16 30 H 0.09 1.38 5.51 -51.93 -0.29 1.09 16 31 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 33 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.81 7.00 -51.92 -0.36 1.45 16 42 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 43 H 0.10 0.94 5.85 -51.93 -0.30 0.63 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.90 7.07 -51.93 -0.37 0.54 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -28.55 342.14 -9.23 -37.78 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.92 Total: 2.81 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.62 Total: -15.37 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.11 Total: -35.71 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.06 Total: -10.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.55 -9.23 -37.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405804320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.900 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds