Wall clock time and date at job start Tue Mar 31 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53006 * 109.46907 * 119.99790 * 2 1 3 5 5 C 1.50702 * 109.46708 * 300.00017 * 4 2 1 6 6 O 1.21280 * 120.00608 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99526 * 180.02562 * 5 4 2 8 8 C 1.46919 * 120.63188 * 359.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.51696 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 12 12 H 1.09001 * 109.49731 * 58.65147 * 11 10 9 13 13 C 1.50701 * 109.49979 * 178.74890 * 11 10 9 14 14 H 1.07998 * 120.00510 * 119.83657 * 13 11 10 15 15 C 1.37883 * 119.99969 * 299.84147 * 13 11 10 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00176 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46665 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47103 * 119.99654 * 17 15 13 20 20 H 1.48496 * 109.47081 * 240.00070 * 17 15 13 21 21 C 1.46928 * 120.62829 * 179.97438 * 7 5 4 22 22 C 1.52991 * 109.47445 * 239.99659 * 2 1 3 23 23 C 1.52996 * 117.50071 * 128.74905 * 22 2 1 24 24 C 1.53005 * 117.50052 * 60.08728 * 22 2 1 25 25 H 1.09005 * 109.47315 * 300.00778 * 1 2 3 26 26 H 1.09006 * 109.47110 * 60.00351 * 1 2 3 27 27 H 1.08994 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46844 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47129 * 299.99426 * 3 2 1 30 30 H 1.08994 * 109.47179 * 59.99594 * 3 2 1 31 31 H 1.08996 * 109.47105 * 180.02562 * 4 2 1 32 32 H 1.08994 * 109.47182 * 59.99855 * 4 2 1 33 33 H 1.09002 * 109.58751 * 353.37646 * 8 7 5 34 34 H 1.08996 * 109.58750 * 113.65831 * 8 7 5 35 35 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 36 36 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 37 37 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 38 38 H 1.09000 * 109.44413 * 181.23506 * 10 9 8 39 39 H 0.97000 * 119.99929 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.58787 * 246.20220 * 21 7 5 41 41 H 1.09007 * 109.58600 * 6.48533 * 21 7 5 42 42 H 1.09003 * 115.54926 * 274.41711 * 22 2 1 43 43 H 1.09000 * 117.50044 * 359.97438 * 23 22 2 44 44 H 1.09002 * 117.50079 * 145.02228 * 23 22 2 45 45 H 1.08991 * 117.49929 * 214.98131 * 24 22 2 46 46 H 1.08997 * 117.49329 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5375 -0.0107 2.4797 6 8 0.8407 0.9756 2.3684 7 7 1.8635 -0.4709 3.7039 8 6 2.7072 -1.6641 3.8549 9 6 1.9897 -2.6672 4.7636 10 6 1.6226 -1.9824 6.0824 11 6 0.6764 -0.8113 5.8084 12 1 -0.2196 -1.1771 5.3068 13 6 0.2930 -0.1588 7.1116 14 1 0.5285 0.8809 7.2850 15 6 -0.3585 -0.8891 8.0829 16 7 -0.6457 -2.1550 7.8718 17 14 -0.8331 -0.0806 9.6986 18 1 -0.3998 1.3398 9.6873 19 1 -2.3064 -0.1478 9.8718 20 1 -0.1697 -0.7910 10.8213 21 6 1.3818 0.2114 4.9128 22 6 2.0400 -0.7213 -1.2491 23 6 3.0764 0.0038 -2.1099 24 6 1.6375 -0.1484 -2.6096 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 2.8805 -2.1151 2.8778 34 1 3.6608 -1.3832 4.3019 35 1 1.0818 -3.0179 4.2730 36 1 2.6471 -3.5139 4.9614 37 1 2.5290 -1.6124 6.5618 38 1 1.1314 -2.7001 6.7395 39 1 -1.1044 -2.6688 8.5549 40 1 2.2261 0.6451 5.4485 41 1 0.6824 0.9994 4.6335 42 1 2.1253 -1.8047 -1.1645 43 1 3.3945 0.9950 -1.7866 44 1 3.8432 -0.6025 -2.5920 45 1 1.4584 -0.8549 -3.4200 46 1 1.0089 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405804320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:45 Heat of formation + Delta-G solvation = -42.151657 kcal Electronic energy + Delta-G solvation = -22972.648795 eV Core-core repulsion = 19861.724236 eV Total energy + Delta-G solvation = -3110.924559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45845 -39.60529 -38.16704 -35.35970 -34.44905 -33.06218 -32.00268 -29.20437 -28.23568 -26.96365 -25.88271 -24.18579 -23.28062 -22.98671 -21.49047 -19.76571 -19.14547 -18.51448 -17.96713 -16.88236 -16.56868 -16.48212 -16.27000 -15.48152 -15.08469 -14.86077 -14.74066 -14.63289 -14.31193 -14.00738 -13.88965 -13.57184 -13.31171 -12.90081 -12.71560 -12.70178 -12.55940 -12.48114 -12.18174 -12.07799 -11.83801 -11.82047 -11.78247 -11.59722 -11.53210 -11.19489 -11.04672 -10.80480 -10.68191 -10.45298 -10.27489 -9.38642 -8.11329 -6.26432 1.38778 1.41020 1.52339 1.77230 2.19572 2.43787 3.00457 3.15063 3.58910 3.75780 4.00133 4.06228 4.14342 4.25353 4.27930 4.33758 4.37108 4.44724 4.56981 4.60304 4.67857 4.68757 4.81753 4.84655 4.87288 4.89337 4.90475 5.00275 5.08514 5.13480 5.15768 5.16348 5.20148 5.31636 5.37659 5.44393 5.51540 5.54857 5.58708 5.61355 5.71063 5.93971 6.14401 6.35057 6.67815 6.83848 7.37302 7.41895 8.92393 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034466 B = 0.003822 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.197695 B = 7323.914309 C = 7643.894007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.011 4.011 3 C -0.150 4.150 4 C -0.120 4.120 5 C 0.502 3.498 6 O -0.577 6.577 7 N -0.611 5.611 8 C 0.110 3.890 9 C -0.128 4.128 10 C -0.106 4.106 11 C 0.041 3.959 12 H -0.015 1.015 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.276 1.276 21 C 0.131 3.869 22 C -0.146 4.146 23 C -0.178 4.178 24 C -0.180 4.180 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.261 0.739 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 -1.294 -17.695 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 C -0.207 4.207 4 C -0.159 4.159 5 C 0.292 3.708 6 O -0.458 6.458 7 N -0.343 5.343 8 C -0.012 4.012 9 C -0.166 4.166 10 C -0.144 4.144 11 C 0.022 3.978 12 H 0.003 0.997 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.201 1.201 21 C 0.009 3.991 22 C -0.164 4.164 23 C -0.215 4.215 24 C -0.217 4.217 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.133 0.867 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.635 -0.932 -17.665 20.144 hybrid contribution -0.885 0.397 1.385 1.690 sum 8.751 -0.535 -16.281 18.491 Atomic orbital electron populations 1.22010 0.95333 1.01249 1.01929 1.19698 0.94879 0.94742 0.91832 1.22135 1.00637 0.95914 1.02046 1.21801 1.03516 1.00467 0.90148 1.21397 0.79670 0.84460 0.85254 1.90538 1.40011 1.28779 1.86456 1.48423 1.50863 1.29408 1.05630 1.21952 0.93026 0.84414 1.01805 1.21918 1.00059 0.98339 0.96269 1.21423 0.97532 0.98819 0.96626 1.18856 0.93008 0.93003 0.92906 0.99696 1.21484 1.37889 0.96943 1.01279 0.93096 1.25693 0.95470 0.95408 1.01699 1.70018 1.41525 1.08438 1.35242 0.85557 0.77770 0.78869 0.79771 1.19347 1.20858 1.20117 1.21467 0.97553 0.95419 0.84709 1.22281 1.04401 0.99234 0.90452 1.23204 0.92443 1.02557 1.03283 1.22971 0.98421 1.03263 0.97067 0.93038 0.92603 0.93140 0.91959 0.92757 0.92756 0.86530 0.87469 0.86764 0.90266 0.93772 0.89278 0.94569 0.92118 0.92960 0.92545 0.92982 0.86674 0.88477 0.87726 0.87933 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.02 71.98 0.58 -3.39 16 2 C -0.01 -0.25 0.62 -52.18 -0.03 -0.28 16 3 C -0.15 -3.65 6.77 71.98 0.49 -3.17 16 4 C -0.12 -2.73 3.10 29.85 0.09 -2.64 16 5 C 0.50 16.92 7.11 87.66 0.62 17.55 16 6 O -0.58 -23.68 10.76 -3.03 -0.03 -23.71 16 7 N -0.61 -21.68 2.97 -818.97 -2.44 -24.12 16 8 C 0.11 3.00 6.34 86.36 0.55 3.54 16 9 C -0.13 -4.26 6.09 30.68 0.19 -4.08 16 10 C -0.11 -4.77 4.96 30.63 0.15 -4.62 16 11 C 0.04 2.11 2.25 -11.47 -0.03 2.09 16 12 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 13 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 15 C 0.02 0.91 5.30 84.66 0.45 1.36 16 16 N -0.91 -52.63 11.32 21.45 0.24 -52.39 16 17 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.13 5.82 5.65 86.35 0.49 6.30 16 22 C -0.15 -2.46 5.14 -10.80 -0.06 -2.51 16 23 C -0.18 -2.60 9.57 30.62 0.29 -2.31 16 24 C -0.18 -2.83 9.39 30.62 0.29 -2.54 16 25 H 0.05 1.78 5.51 -2.38 -0.01 1.76 16 26 H 0.05 1.36 7.29 -2.38 -0.02 1.34 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.30 6.97 -2.39 -0.02 1.29 16 29 H 0.05 1.21 7.07 -2.39 -0.02 1.20 16 30 H 0.05 1.72 5.51 -2.39 -0.01 1.70 16 31 H 0.12 2.04 7.94 -2.39 -0.02 2.03 16 32 H 0.11 2.11 7.69 -2.39 -0.02 2.09 16 33 H 0.11 2.17 5.93 -2.39 -0.01 2.16 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.06 3.16 6.05 -2.39 -0.01 3.14 16 39 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.54 7.00 -2.38 -0.02 2.52 16 42 H 0.12 1.67 8.11 -2.39 -0.02 1.65 16 43 H 0.10 1.50 5.85 -2.39 -0.01 1.49 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.48 7.07 -2.39 -0.02 1.47 16 Total: -1.00 -66.13 342.14 5.03 -61.10 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.94 Total: 17.70 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.29 Total: -24.63 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.19 Total: -76.51 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.03 Total: -23.71 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.13 5.03 -61.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405804320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.948 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds