Wall clock time and date at job start Tue Mar 31 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46968 * 2 1 4 4 C 1.50702 * 109.47203 * 120.00248 * 2 1 3 5 5 H 1.07995 * 120.00003 * 119.78992 * 4 2 1 6 6 C 1.37882 * 119.99562 * 299.79049 * 4 2 1 7 7 N 1.31506 * 120.00138 * 1.50291 * 6 4 2 8 8 Si 1.86802 * 119.99679 * 181.49970 * 6 4 2 9 9 H 1.48502 * 109.47053 * 270.00166 * 8 6 4 10 10 H 1.48497 * 109.47136 * 150.00448 * 8 6 4 11 11 H 1.48501 * 109.47117 * 30.00313 * 8 6 4 12 12 C 1.53001 * 109.46817 * 239.99992 * 2 1 3 13 13 N 1.46906 * 109.47245 * 60.00085 * 12 2 1 14 14 C 1.46894 * 110.99785 * 179.97438 * 13 12 2 15 15 H 1.08999 * 112.88973 * 336.34536 * 14 13 12 16 16 C 1.53605 * 113.66401 * 107.81629 * 14 13 12 17 17 H 1.09000 * 115.87213 * 207.43633 * 16 14 13 18 18 C 1.53942 * 114.06028 * 345.30602 * 16 14 13 19 19 C 1.53727 * 104.99618 * 78.70779 * 18 16 14 20 20 O 1.42935 * 107.98798 * 357.94205 * 19 18 16 21 21 C 1.43511 * 109.37162 * 19.64838 * 20 19 18 22 22 H 1.08997 * 115.52234 * 101.33743 * 21 20 19 23 23 C 1.52890 * 113.65876 * 205.00127 * 14 13 12 24 24 C 1.52898 * 121.19087 * 145.41688 * 23 14 13 25 25 C 1.53958 * 86.77316 * 209.30424 * 24 23 14 26 26 C 1.52893 * 121.17856 * 36.74764 * 23 14 13 27 27 H 1.09007 * 109.47078 * 292.38127 * 1 2 3 28 28 H 1.09001 * 109.47181 * 52.37726 * 1 2 3 29 29 H 1.09001 * 109.47644 * 172.38300 * 1 2 3 30 30 H 1.09002 * 109.46960 * 187.39194 * 3 2 1 31 31 H 1.08998 * 109.47715 * 307.38594 * 3 2 1 32 32 H 1.08999 * 109.47283 * 67.39168 * 3 2 1 33 33 H 0.97007 * 120.00341 * 357.04929 * 7 6 4 34 34 H 1.09001 * 109.46718 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47043 * 299.99800 * 12 2 1 36 36 H 1.00894 * 110.99840 * 303.95493 * 13 12 2 37 37 H 1.08994 * 110.33493 * 197.59049 * 18 16 14 38 38 H 1.09002 * 110.33505 * 319.72368 * 18 16 14 39 39 H 1.08999 * 109.76451 * 117.57950 * 19 18 16 40 40 H 1.09004 * 109.76290 * 238.31112 * 19 18 16 41 41 H 1.08996 * 113.66260 * 323.77600 * 24 23 14 42 42 H 1.08998 * 113.66273 * 94.83387 * 24 23 14 43 43 H 1.08997 * 113.57921 * 270.10785 * 25 24 23 44 44 H 1.08997 * 113.64379 * 139.33940 * 25 24 23 45 45 H 1.09002 * 113.66542 * 265.17183 * 26 23 14 46 46 H 1.09003 * 113.66354 * 36.23720 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6504 -1.5905 1.1313 6 6 1.7028 -0.2369 2.4827 7 7 0.9259 0.8173 2.6036 8 14 2.3598 -1.0927 4.0076 9 1 1.4079 -2.1514 4.4299 10 1 2.5160 -0.1020 5.1027 11 1 3.6778 -1.7051 3.7024 12 6 2.0399 -0.7213 -1.2493 13 7 1.5502 -0.0287 -2.4487 14 6 2.0217 -0.6946 -3.6703 15 1 2.9284 -1.2785 -3.5119 16 6 0.9195 -1.4554 -4.4224 17 1 1.2506 -2.3048 -5.0199 18 6 -0.3610 -1.6821 -3.5984 19 6 -1.1091 -0.3401 -3.6487 20 8 -0.3078 0.5846 -4.3875 21 6 0.6377 -0.1391 -5.1887 22 1 0.3816 -0.2372 -6.2436 23 6 2.0922 0.2309 -4.8853 24 6 3.1843 0.0674 -5.9429 25 6 3.0581 1.5830 -6.1822 26 6 2.5205 1.6918 -4.7437 27 1 -0.3633 0.3913 0.9503 28 1 -0.3633 0.6273 -0.8140 29 1 -0.3634 -1.0186 -0.1362 30 1 3.1219 1.4453 -0.1322 31 1 1.5728 1.9931 -0.8165 32 1 1.7886 1.9167 0.9487 33 1 0.6195 1.2874 1.8123 34 1 3.1299 -0.7217 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.5438 0.0414 -2.4402 37 1 -0.9657 -2.4700 -4.0472 38 1 -0.1088 -1.9387 -2.5695 39 1 -2.0708 -0.4725 -4.1443 40 1 -1.2643 0.0335 -2.6365 41 1 4.1489 -0.2320 -5.5330 42 1 2.8792 -0.5373 -6.7969 43 1 2.3230 1.8444 -6.9434 44 1 4.0151 2.0835 -6.3291 45 1 1.6853 2.3845 -4.6401 46 1 3.2986 1.8492 -3.9967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414166623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:32 Heat of formation + Delta-G solvation = -2.081770 kcal Electronic energy + Delta-G solvation = -24025.561414 eV Core-core repulsion = 20916.374416 eV Total energy + Delta-G solvation = -3109.186998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76852 -38.89179 -38.54584 -35.82263 -33.80937 -31.86907 -31.43894 -27.87682 -27.56825 -26.52530 -26.33660 -25.10227 -24.26052 -22.93433 -20.99711 -20.61296 -19.44203 -18.61539 -17.93846 -17.14799 -16.29266 -15.90797 -15.80549 -15.68655 -15.61476 -15.28707 -15.13015 -14.34307 -14.10225 -13.92469 -13.48154 -13.26313 -13.19787 -13.11227 -12.88895 -12.70287 -12.53888 -12.49353 -12.38229 -12.35047 -12.23435 -11.92009 -11.66478 -11.52600 -11.37498 -11.23135 -11.04648 -10.63818 -10.42790 -10.35233 -10.19891 -9.09321 -8.34654 -6.21023 1.54324 1.62320 1.79400 2.55334 2.61581 3.19460 3.26948 3.29193 3.50803 3.71680 3.82761 3.93983 3.99211 4.05089 4.10444 4.29760 4.33686 4.37924 4.48566 4.54191 4.58554 4.62095 4.69461 4.76077 4.83027 4.85937 4.89097 4.91528 4.96695 4.99926 5.03255 5.11601 5.14645 5.15946 5.24087 5.27044 5.29808 5.52449 5.61888 5.69252 5.87235 6.04502 6.18047 6.28881 6.43328 6.64041 6.80940 7.57710 8.91307 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025310 B = 0.005064 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.022487 B = 5527.797561 C = 5888.909498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.045 3.955 3 C -0.115 4.115 4 C -0.599 4.599 5 H 0.037 0.963 6 C -0.022 4.022 7 N -0.943 5.943 8 Si 1.108 2.892 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.100 3.900 13 N -0.669 5.669 14 C 0.074 3.926 15 H 0.076 0.924 16 C -0.159 4.159 17 H 0.136 0.864 18 C -0.153 4.153 19 C 0.043 3.957 20 O -0.375 6.375 21 C 0.081 3.919 22 H 0.113 0.887 23 C -0.101 4.101 24 C -0.096 4.096 25 C -0.132 4.132 26 C -0.112 4.112 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.277 0.723 34 H 0.045 0.955 35 H 0.007 0.993 36 H 0.349 0.651 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -4.400 -19.282 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 C -0.173 4.173 4 C -0.638 4.638 5 H 0.056 0.944 6 C -0.221 4.221 7 N -0.585 5.585 8 Si 0.932 3.068 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.029 4.029 13 N -0.305 5.305 14 C -0.037 4.037 15 H 0.094 0.906 16 C -0.179 4.179 17 H 0.154 0.846 18 C -0.190 4.190 19 C -0.033 4.033 20 O -0.294 6.294 21 C 0.024 3.976 22 H 0.130 0.870 23 C -0.102 4.102 24 C -0.133 4.133 25 C -0.169 4.169 26 C -0.150 4.150 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.174 0.826 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.515 -3.668 -17.601 17.987 hybrid contribution -0.607 -0.836 -0.999 1.437 sum -0.092 -4.504 -18.600 19.138 Atomic orbital electron populations 1.21917 0.98682 0.98553 0.99932 1.18309 0.91940 0.92836 0.92508 1.21666 0.98387 0.98409 0.98857 1.22198 1.34795 1.13596 0.93205 0.94420 1.26846 0.94679 0.96652 1.03906 1.70883 1.32971 1.19841 1.34775 0.83038 0.76094 0.74949 0.72715 1.20350 1.21261 1.20225 1.21725 0.97951 0.93649 0.89557 1.60330 1.17910 1.52235 0.99993 1.22516 0.97105 0.94087 0.89972 0.90608 1.24628 0.96037 0.98581 0.98640 0.84594 1.22688 0.96787 0.98549 1.01016 1.23177 0.95272 0.88620 0.96272 1.88334 1.49328 1.31885 1.59865 1.23714 0.87953 0.90817 0.95163 0.86965 1.22901 0.94587 0.96732 0.95945 1.22526 0.96827 0.97050 0.96930 1.22858 1.01528 0.96376 0.96188 1.22330 0.99743 0.95780 0.97155 0.93625 0.94616 0.95099 0.95790 0.94471 0.94651 0.90759 0.93658 0.97466 0.82579 0.87814 0.92391 0.89908 0.91719 0.89382 0.89216 0.89552 0.90785 0.93356 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 7.62 71.98 0.55 -5.78 16 2 C 0.04 2.21 0.57 -52.93 -0.03 2.18 16 3 C -0.12 -5.78 7.90 71.98 0.57 -5.21 16 4 C -0.60 -33.37 8.01 25.60 0.21 -33.16 16 5 H 0.04 2.10 7.74 -2.91 -0.02 2.08 16 6 C -0.02 -1.24 5.10 84.66 0.43 -0.81 16 7 N -0.94 -56.34 12.12 21.45 0.26 -56.08 16 8 Si 1.11 50.68 29.90 68.60 2.05 52.73 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.10 4.28 4.20 86.30 0.36 4.64 16 13 N -0.67 -24.35 5.15 -490.70 -2.53 -26.88 16 14 C 0.07 2.16 4.00 45.08 0.18 2.34 16 15 H 0.08 2.23 7.87 -2.39 -0.02 2.21 16 16 C -0.16 -3.63 4.98 -9.63 -0.05 -3.68 16 17 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.15 -3.68 5.99 31.16 0.19 -3.50 16 19 C 0.04 1.12 6.50 72.23 0.47 1.59 16 20 O -0.37 -11.05 10.00 -148.98 -1.49 -12.54 16 21 C 0.08 1.90 5.40 31.28 0.17 2.07 16 22 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 23 C -0.10 -2.46 0.84 -52.27 -0.04 -2.50 16 24 C -0.10 -1.73 7.84 30.88 0.24 -1.49 16 25 C -0.13 -2.55 8.08 31.23 0.25 -2.30 16 26 C -0.11 -3.06 7.49 30.88 0.23 -2.83 16 27 H 0.04 2.42 5.19 -2.38 -0.01 2.41 16 28 H 0.03 1.54 5.99 -2.39 -0.01 1.53 16 29 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.74 7.80 -2.39 -0.02 1.72 16 32 H 0.03 1.93 5.25 -2.39 -0.01 1.91 16 33 H 0.28 16.41 3.56 -92.70 -0.33 16.07 16 34 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 35 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 36 H 0.35 12.59 2.00 -89.70 -0.18 12.41 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.71 6.84 -2.39 -0.02 1.69 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.95 6.37 -2.39 -0.02 1.94 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.62 334.95 3.23 -60.39 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 1.21 Total: 30.80 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 3.73 Total: -48.43 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.27 Total: -82.96 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.49 Total: -12.54 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -63.62 3.23 -60.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.308 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds