Wall clock time and date at job start Tue Mar 31 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 C 1.50704 * 109.47306 * 119.99897 * 2 1 3 5 5 H 1.08003 * 119.99607 * 121.35751 * 4 2 1 6 6 C 1.37874 * 120.00257 * 301.36105 * 4 2 1 7 7 N 1.31507 * 120.00129 * 193.96215 * 6 4 2 8 8 Si 1.86807 * 119.99589 * 13.95827 * 6 4 2 9 9 H 1.48501 * 109.46722 * 84.56111 * 8 6 4 10 10 H 1.48503 * 109.46877 * 204.55550 * 8 6 4 11 11 H 1.48494 * 109.47294 * 324.55686 * 8 6 4 12 12 C 1.53007 * 109.46928 * 239.99895 * 2 1 3 13 13 N 1.46899 * 109.46946 * 60.00222 * 12 2 1 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 2 15 15 H 1.08995 * 112.87779 * 26.79196 * 14 13 12 16 16 C 1.53676 * 113.64407 * 255.49055 * 14 13 12 17 17 H 1.08997 * 116.23282 * 339.50632 * 16 14 13 18 18 C 1.54206 * 113.69553 * 116.84652 * 16 14 13 19 19 C 1.55091 * 103.45362 * 69.24111 * 18 16 14 20 20 O 1.42757 * 108.34455 * 15.59191 * 19 18 16 21 21 C 1.43004 * 110.94122 * 0.02562 * 20 19 18 22 22 H 1.09008 * 114.50765 * 114.04136 * 21 20 19 23 23 C 1.52890 * 113.64098 * 158.20285 * 14 13 12 24 24 C 1.52891 * 121.17447 * 13.89392 * 23 14 13 25 25 C 1.53957 * 86.78382 * 209.36558 * 24 23 14 26 26 C 1.52919 * 121.12453 * 265.31388 * 23 14 13 27 27 H 1.08998 * 109.46782 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.46911 * 59.99780 * 1 2 3 29 29 H 1.08999 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47225 * 189.31633 * 3 2 1 31 31 H 1.08998 * 109.46631 * 309.31556 * 3 2 1 32 32 H 1.08999 * 109.47253 * 69.31745 * 3 2 1 33 33 H 0.97005 * 119.99940 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46729 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.46917 * 299.99627 * 12 2 1 36 36 H 1.00900 * 111.00126 * 303.95354 * 13 12 2 37 37 H 1.08994 * 110.50862 * 187.40102 * 18 16 14 38 38 H 1.08999 * 110.51072 * 310.10144 * 18 16 14 39 39 H 1.09005 * 109.51180 * 255.92558 * 19 18 16 40 40 H 1.09003 * 109.76578 * 135.40399 * 19 18 16 41 41 H 1.09000 * 113.66686 * 323.84137 * 24 23 14 42 42 H 1.09009 * 113.66027 * 94.89607 * 24 23 14 43 43 H 1.09000 * 113.58105 * 270.15473 * 25 24 23 44 44 H 1.08993 * 113.65219 * 139.36248 * 25 24 23 45 45 H 1.08999 * 113.66555 * 265.14411 * 26 23 14 46 46 H 1.09000 * 113.66612 * 36.20775 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6712 -1.5755 1.1315 6 6 1.6763 -0.2560 2.4826 7 7 2.3180 -0.6882 3.5460 8 14 0.2825 0.9738 2.6683 9 1 -1.0138 0.2504 2.7082 10 1 0.4617 1.7383 3.9288 11 1 0.2917 1.9102 1.5158 12 6 2.0399 -0.7213 -1.2493 13 7 1.5503 -0.0288 -2.4487 14 6 2.0218 -0.6946 -3.6703 15 1 2.2187 -1.7567 -3.5249 16 6 3.1627 0.0527 -4.3784 17 1 3.2681 1.1105 -4.1378 18 6 4.4824 -0.7430 -4.4367 19 6 4.1640 -1.8982 -5.4212 20 8 2.9713 -1.5667 -6.1323 21 6 2.4636 -0.2968 -5.7147 22 1 2.4912 0.4761 -6.4829 23 6 1.1695 -0.3900 -4.9025 24 6 0.1556 0.7544 -4.9004 25 6 -0.6541 -0.0766 -5.9124 26 6 0.0362 -1.3234 -5.3302 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1173 1.4470 -0.1664 31 1 1.5473 2.0020 -0.7951 32 1 1.8190 1.9061 0.9614 33 1 2.0677 -0.3682 4.4269 34 1 3.1300 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2492 36 1 0.5437 0.0414 -2.4402 37 1 5.2866 -0.1206 -4.8290 38 1 4.7414 -1.1259 -3.4496 39 1 4.0146 -2.8221 -4.8624 40 1 4.9886 -2.0221 -6.1232 41 1 -0.3483 0.8907 -3.9435 42 1 0.5459 1.6854 -5.3116 43 1 -0.3901 0.1230 -6.9509 44 1 -1.7296 -0.0519 -5.7373 45 1 0.3312 -2.0526 -6.0848 46 1 -0.5012 -1.7707 -4.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414166624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:36 Heat of formation + Delta-G solvation = 17.449537 kcal Electronic energy + Delta-G solvation = -23519.901129 eV Core-core repulsion = 20411.561072 eV Total energy + Delta-G solvation = -3108.340057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52365 -37.75644 -36.97527 -34.30412 -32.31033 -31.10439 -30.39346 -26.27742 -25.78218 -25.75054 -24.95666 -24.14096 -22.70978 -21.99302 -20.19646 -18.79523 -17.94807 -16.88197 -16.13022 -15.94468 -15.62202 -15.09747 -15.07030 -14.50712 -14.28165 -13.83809 -13.36019 -13.05316 -12.85283 -12.56721 -12.48191 -12.17972 -12.11702 -11.95964 -11.79715 -11.62721 -11.38933 -11.27380 -10.99188 -10.68078 -10.61615 -10.26159 -10.23797 -10.04734 -9.96790 -9.82871 -9.61833 -9.36192 -8.95070 -8.55094 -8.37153 -7.88032 -6.08175 -4.03734 3.30933 3.39770 3.44394 3.54626 4.21408 4.38464 4.43547 4.53175 4.69770 4.74397 4.80212 4.91041 5.00152 5.11156 5.25035 5.28034 5.36248 5.48408 5.60245 5.68256 5.75349 5.75950 5.80151 5.89195 5.92737 5.99850 5.99881 6.05964 6.13171 6.21231 6.24950 6.36933 6.49962 6.51418 6.58545 6.76634 6.80562 6.92602 7.05196 7.08156 7.40222 7.53224 7.62893 7.84560 7.93647 8.55138 8.96555 9.58060 11.05335 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.005038 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.220665 B = 5556.331571 C = 6259.195806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 C -0.126 4.126 4 C -0.512 4.512 5 H 0.070 0.930 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.246 1.246 12 C 0.085 3.915 13 N -0.673 5.673 14 C 0.086 3.914 15 H 0.070 0.930 16 C -0.119 4.119 17 H 0.118 0.882 18 C -0.148 4.148 19 C 0.054 3.946 20 O -0.365 6.365 21 C 0.081 3.919 22 H 0.095 0.905 23 C -0.112 4.112 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.125 4.125 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.337 0.663 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 1.809 -19.416 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 C -0.183 4.183 4 C -0.550 4.550 5 H 0.088 0.912 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.172 1.172 12 C -0.043 4.043 13 N -0.306 5.306 14 C -0.025 4.025 15 H 0.088 0.912 16 C -0.139 4.139 17 H 0.136 0.864 18 C -0.186 4.186 19 C -0.023 4.023 20 O -0.284 6.284 21 C 0.022 3.978 22 H 0.113 0.887 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.179 4.179 26 C -0.162 4.162 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.158 0.842 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.946 2.128 -19.353 19.493 hybrid contribution -1.109 -0.220 0.596 1.278 sum -2.056 1.907 -18.757 18.966 Atomic orbital electron populations 1.22364 0.99520 0.99995 0.98710 1.18474 0.90890 0.93413 0.93251 1.22063 0.99703 0.97401 0.99171 1.20863 1.31108 1.14468 0.88548 0.91163 1.24976 0.96183 0.95842 0.95841 1.69963 1.39574 1.45223 0.98667 0.87311 0.82627 0.82331 0.75996 1.21654 1.23595 1.17164 1.21992 0.99407 0.94300 0.88624 1.60709 1.15972 1.52980 1.00903 1.22660 0.94591 0.96000 0.89259 0.91180 1.24053 0.93039 1.01484 0.95283 0.86425 1.22975 0.98151 0.96973 1.00468 1.23245 0.87065 0.98005 0.93943 1.88021 1.41275 1.36236 1.62836 1.23360 0.93938 0.85775 0.94677 0.88748 1.23004 0.93050 0.98796 0.96390 1.22457 0.95584 0.96111 0.99801 1.22853 0.99175 0.96934 0.98892 1.22643 0.96346 0.96539 1.00673 0.94210 0.94844 0.93599 0.94154 0.94942 0.93834 0.92761 0.91861 0.96234 0.84247 0.90783 0.89643 0.91715 0.91497 0.89145 0.91277 0.90455 0.91624 0.91015 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 7.37 37.16 0.27 -2.86 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.13 -2.75 7.55 37.16 0.28 -2.47 16 4 C -0.51 -14.03 8.62 -34.44 -0.30 -14.33 16 5 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 6 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 8 Si 0.88 21.88 22.79 -169.99 -3.87 18.01 16 9 H -0.29 -7.10 7.10 56.52 0.40 -6.70 16 10 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 11 H -0.25 -5.64 4.65 56.52 0.26 -5.38 16 12 C 0.09 1.65 4.44 -3.82 -0.02 1.63 16 13 N -0.67 -10.69 5.67 -106.41 -0.60 -11.29 16 14 C 0.09 1.19 3.30 -67.42 -0.22 0.97 16 15 H 0.07 1.07 7.45 -51.93 -0.39 0.69 16 16 C -0.12 -1.48 4.81 -88.69 -0.43 -1.91 16 17 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 18 C -0.15 -1.67 6.66 -24.99 -0.17 -1.83 16 19 C 0.05 0.60 7.31 38.26 0.28 0.88 16 20 O -0.36 -4.72 10.74 -35.23 -0.38 -5.10 16 21 C 0.08 0.95 5.41 -25.75 -0.14 0.82 16 22 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 23 C -0.11 -1.33 0.88 -154.65 -0.14 -1.47 16 24 C -0.10 -1.10 7.37 -26.29 -0.19 -1.30 16 25 C -0.14 -1.40 8.08 -25.74 -0.21 -1.61 16 26 C -0.12 -1.43 7.74 -26.28 -0.20 -1.63 16 27 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 28 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.87 8.12 -51.93 -0.42 0.44 16 31 H 0.03 0.63 7.88 -51.93 -0.41 0.23 16 32 H 0.04 1.00 4.30 -51.93 -0.22 0.78 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.34 5.22 5.09 -39.29 -0.20 5.02 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.03 6.76 -51.93 -0.35 0.68 16 42 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -29.27 336.04 -8.43 -37.70 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.06 Total: 4.50 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -1.36 Total: -22.29 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.17 Total: -37.88 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -3.87 Total: 18.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.27 -8.43 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.152 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds