Wall clock time and date at job start Tue Mar 31 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 C 1.50704 * 109.47306 * 119.99897 * 2 1 3 5 5 H 1.08003 * 119.99607 * 121.35751 * 4 2 1 6 6 C 1.37874 * 120.00257 * 301.36105 * 4 2 1 7 7 N 1.31507 * 120.00129 * 193.96215 * 6 4 2 8 8 Si 1.86807 * 119.99589 * 13.95827 * 6 4 2 9 9 H 1.48501 * 109.46722 * 84.56111 * 8 6 4 10 10 H 1.48503 * 109.46877 * 204.55550 * 8 6 4 11 11 H 1.48494 * 109.47294 * 324.55686 * 8 6 4 12 12 C 1.53007 * 109.46928 * 239.99895 * 2 1 3 13 13 N 1.46899 * 109.46946 * 60.00222 * 12 2 1 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 2 15 15 H 1.08995 * 112.87779 * 26.79196 * 14 13 12 16 16 C 1.53676 * 113.64407 * 255.49055 * 14 13 12 17 17 H 1.08997 * 116.23282 * 339.50632 * 16 14 13 18 18 C 1.54206 * 113.69553 * 116.84652 * 16 14 13 19 19 C 1.55091 * 103.45362 * 69.24111 * 18 16 14 20 20 O 1.42757 * 108.34455 * 15.59191 * 19 18 16 21 21 C 1.43004 * 110.94122 * 0.02562 * 20 19 18 22 22 H 1.09008 * 114.50765 * 114.04136 * 21 20 19 23 23 C 1.52890 * 113.64098 * 158.20285 * 14 13 12 24 24 C 1.52891 * 121.17447 * 13.89392 * 23 14 13 25 25 C 1.53957 * 86.78382 * 209.36558 * 24 23 14 26 26 C 1.52919 * 121.12453 * 265.31388 * 23 14 13 27 27 H 1.08998 * 109.46782 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.46911 * 59.99780 * 1 2 3 29 29 H 1.08999 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47225 * 189.31633 * 3 2 1 31 31 H 1.08998 * 109.46631 * 309.31556 * 3 2 1 32 32 H 1.08999 * 109.47253 * 69.31745 * 3 2 1 33 33 H 0.97005 * 119.99940 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46729 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.46917 * 299.99627 * 12 2 1 36 36 H 1.00900 * 111.00126 * 303.95354 * 13 12 2 37 37 H 1.08994 * 110.50862 * 187.40102 * 18 16 14 38 38 H 1.08999 * 110.51072 * 310.10144 * 18 16 14 39 39 H 1.09005 * 109.51180 * 255.92558 * 19 18 16 40 40 H 1.09003 * 109.76578 * 135.40399 * 19 18 16 41 41 H 1.09000 * 113.66686 * 323.84137 * 24 23 14 42 42 H 1.09009 * 113.66027 * 94.89607 * 24 23 14 43 43 H 1.09000 * 113.58105 * 270.15473 * 25 24 23 44 44 H 1.08993 * 113.65219 * 139.36248 * 25 24 23 45 45 H 1.08999 * 113.66555 * 265.14411 * 26 23 14 46 46 H 1.09000 * 113.66612 * 36.20775 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6712 -1.5755 1.1315 6 6 1.6763 -0.2560 2.4826 7 7 2.3180 -0.6882 3.5460 8 14 0.2825 0.9738 2.6683 9 1 -1.0138 0.2504 2.7082 10 1 0.4617 1.7383 3.9288 11 1 0.2917 1.9102 1.5158 12 6 2.0399 -0.7213 -1.2493 13 7 1.5503 -0.0288 -2.4487 14 6 2.0218 -0.6946 -3.6703 15 1 2.2187 -1.7567 -3.5249 16 6 3.1627 0.0527 -4.3784 17 1 3.2681 1.1105 -4.1378 18 6 4.4824 -0.7430 -4.4367 19 6 4.1640 -1.8982 -5.4212 20 8 2.9713 -1.5667 -6.1323 21 6 2.4636 -0.2968 -5.7147 22 1 2.4912 0.4761 -6.4829 23 6 1.1695 -0.3900 -4.9025 24 6 0.1556 0.7544 -4.9004 25 6 -0.6541 -0.0766 -5.9124 26 6 0.0362 -1.3234 -5.3302 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1173 1.4470 -0.1664 31 1 1.5473 2.0020 -0.7951 32 1 1.8190 1.9061 0.9614 33 1 2.0677 -0.3682 4.4269 34 1 3.1300 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2492 36 1 0.5437 0.0414 -2.4402 37 1 5.2866 -0.1206 -4.8290 38 1 4.7414 -1.1259 -3.4496 39 1 4.0146 -2.8221 -4.8624 40 1 4.9886 -2.0221 -6.1232 41 1 -0.3483 0.8907 -3.9435 42 1 0.5459 1.6854 -5.3116 43 1 -0.3901 0.1230 -6.9509 44 1 -1.7296 -0.0519 -5.7373 45 1 0.3312 -2.0526 -6.0848 46 1 -0.5012 -1.7707 -4.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414166624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:35 Heat of formation + Delta-G solvation = -1.205023 kcal Electronic energy + Delta-G solvation = -23520.710051 eV Core-core repulsion = 20411.561072 eV Total energy + Delta-G solvation = -3109.148979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48880 -38.87136 -38.43823 -35.59094 -34.05347 -32.62549 -31.38658 -27.97934 -27.20639 -26.86316 -26.62084 -25.30265 -23.90932 -22.87125 -21.17814 -20.60228 -18.91938 -18.19865 -17.85560 -17.07815 -17.05349 -16.46209 -16.02287 -15.66209 -15.33413 -15.16233 -14.97547 -14.74044 -14.29215 -14.10059 -13.83620 -13.69560 -13.36342 -13.18469 -12.90052 -12.71579 -12.63831 -12.32781 -12.20886 -12.15109 -12.00866 -11.90072 -11.62765 -11.56018 -11.30097 -11.12174 -10.98828 -10.57863 -10.55330 -10.38666 -10.20360 -9.23753 -8.29457 -6.28684 1.35219 1.38313 1.49533 2.35616 2.63818 3.07460 3.18131 3.41112 3.53488 3.68086 3.85435 3.88481 4.02211 4.03716 4.19022 4.28034 4.34679 4.38776 4.46418 4.52709 4.57765 4.66054 4.76958 4.82136 4.85707 4.89377 4.89882 4.95314 5.01572 5.05682 5.09480 5.13330 5.15485 5.16876 5.17625 5.25995 5.33101 5.51616 5.57922 5.63614 5.76450 5.87973 6.13384 6.24488 6.34997 6.58542 6.78318 7.36614 8.87936 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.005038 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.220665 B = 5556.331571 C = 6259.195806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 C -0.120 4.120 4 C -0.514 4.514 5 H 0.025 0.975 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.284 1.284 10 H -0.316 1.316 11 H -0.209 1.209 12 C 0.101 3.899 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.050 0.950 16 C -0.119 4.119 17 H 0.120 0.880 18 C -0.146 4.146 19 C 0.052 3.948 20 O -0.381 6.381 21 C 0.086 3.914 22 H 0.114 0.886 23 C -0.110 4.110 24 C -0.099 4.099 25 C -0.129 4.129 26 C -0.130 4.130 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.047 0.953 35 H 0.005 0.995 36 H 0.341 0.659 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 3.928 -22.053 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 C -0.178 4.178 4 C -0.552 4.552 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.211 1.211 10 H -0.246 1.246 11 H -0.133 1.133 12 C -0.028 4.028 13 N -0.294 5.294 14 C -0.034 4.034 15 H 0.068 0.932 16 C -0.139 4.139 17 H 0.138 0.862 18 C -0.184 4.184 19 C -0.024 4.024 20 O -0.300 6.300 21 C 0.028 3.972 22 H 0.132 0.868 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.166 4.166 26 C -0.167 4.167 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.163 0.837 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.429 4.247 -22.033 22.570 hybrid contribution -0.544 -1.014 1.383 1.799 sum -2.973 3.233 -20.650 21.112 Atomic orbital electron populations 1.22289 0.97725 1.00387 1.00004 1.18460 0.92292 0.93659 0.92037 1.21967 0.99676 0.96694 0.99415 1.21212 1.29827 1.13195 0.90951 0.95643 1.25825 0.98626 0.98267 0.95406 1.70116 1.41794 1.47689 0.99315 0.86362 0.79102 0.80604 0.76662 1.21129 1.24564 1.13338 1.21625 0.98371 0.93509 0.89300 1.60664 1.16239 1.52288 1.00185 1.22721 0.96531 0.95056 0.89101 0.93187 1.24039 0.93052 1.01389 0.95378 0.86152 1.22969 0.98346 0.97179 0.99913 1.23316 0.87197 0.97581 0.94271 1.88002 1.41929 1.36940 1.63134 1.23421 0.93347 0.85712 0.94734 0.86829 1.23078 0.93316 0.99853 0.94828 1.22471 0.94997 0.96190 1.00023 1.22810 0.99599 0.95093 0.99132 1.22661 0.96543 0.97074 1.00455 0.95137 0.91029 0.93916 0.94794 0.91976 0.95126 0.92867 0.93410 0.97705 0.83714 0.88934 0.91095 0.92493 0.89525 0.89461 0.90065 0.89436 0.90592 0.91791 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 7.37 71.98 0.53 -5.27 16 2 C 0.04 1.61 0.57 -52.93 -0.03 1.58 16 3 C -0.12 -4.97 7.55 71.98 0.54 -4.42 16 4 C -0.51 -28.92 8.62 25.60 0.22 -28.70 16 5 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 6 C 0.02 0.91 5.32 84.65 0.45 1.36 16 7 N -0.95 -60.02 13.96 21.44 0.30 -59.72 16 8 Si 0.94 44.73 22.79 68.60 1.56 46.29 16 9 H -0.28 -13.16 7.10 99.48 0.71 -12.45 16 10 H -0.32 -15.37 7.11 99.48 0.71 -14.67 16 11 H -0.21 -8.71 4.65 99.48 0.46 -8.24 16 12 C 0.10 3.91 4.44 86.31 0.38 4.29 16 13 N -0.66 -19.76 5.67 -490.57 -2.78 -22.54 16 14 C 0.08 2.02 3.30 45.11 0.15 2.17 16 15 H 0.05 1.55 7.45 -2.39 -0.02 1.53 16 16 C -0.12 -2.74 4.81 -9.55 -0.05 -2.78 16 17 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 18 C -0.15 -3.12 6.66 31.72 0.21 -2.91 16 19 C 0.05 1.11 7.31 72.70 0.53 1.64 16 20 O -0.38 -9.21 10.74 -148.98 -1.60 -10.82 16 21 C 0.09 1.81 5.41 31.23 0.17 1.98 16 22 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 23 C -0.11 -2.37 0.88 -52.27 -0.05 -2.42 16 24 C -0.10 -1.80 7.37 30.88 0.23 -1.57 16 25 C -0.13 -2.13 8.08 31.23 0.25 -1.87 16 26 C -0.13 -2.73 7.74 30.89 0.24 -2.49 16 27 H 0.03 1.26 2.25 -2.39 -0.01 1.26 16 28 H 0.07 2.27 6.57 -2.39 -0.02 2.25 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.41 8.12 -2.39 -0.02 1.39 16 31 H 0.06 2.20 7.88 -2.39 -0.02 2.18 16 32 H 0.03 1.33 4.30 -2.39 -0.01 1.32 16 33 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.00 0.19 8.13 -2.39 -0.02 0.17 16 36 H 0.34 9.58 5.09 -89.69 -0.46 9.13 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.66 6.76 -2.39 -0.02 1.64 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.43 8.04 -2.39 -0.02 1.42 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -64.71 336.04 1.52 -63.19 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.25 Total: 23.01 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.79 Total: -39.42 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.48 Total: -82.27 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.60 Total: -10.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.56 Total: 46.29 kcal Total: -64.71 1.52 -63.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.989 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds