Wall clock time and date at job start Tue Mar 31 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 C 1.53001 * 109.47216 * 64.99773 * 3 2 1 5 5 C 1.53002 * 109.46802 * 184.86629 * 4 3 2 6 6 C 1.53008 * 109.47238 * 184.99736 * 3 2 1 7 7 N 1.46906 * 109.46948 * 64.83695 * 6 3 2 8 8 C 1.46900 * 110.99863 * 200.21782 * 7 6 3 9 9 C 1.50700 * 109.46604 * 158.31632 * 8 7 6 10 10 H 1.07992 * 120.00451 * 2.70407 * 9 8 7 11 11 C 1.37875 * 119.99609 * 182.69878 * 9 8 7 12 12 N 1.31516 * 120.00146 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00239 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47312 * 89.99595 * 13 11 9 15 15 H 1.48495 * 109.47134 * 209.99751 * 13 11 9 16 16 H 1.48503 * 109.46718 * 329.99551 * 13 11 9 17 17 C 1.46903 * 110.99601 * 76.26566 * 7 6 3 18 18 C 1.50695 * 109.47092 * 199.97643 * 17 7 6 19 19 C 1.41391 * 126.57885 * 255.48651 * 18 17 7 20 20 C 1.34520 * 106.83781 * 180.19000 * 19 18 17 21 21 O 1.34300 * 108.42117 * 359.63144 * 20 19 18 22 22 C 1.34306 * 109.47706 * 0.37952 * 21 20 19 23 23 C 1.50696 * 125.78723 * 179.78902 * 22 21 20 24 24 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47293 * 300.00181 * 1 2 3 26 26 H 1.09004 * 109.46662 * 60.00651 * 1 2 3 27 27 H 1.09000 * 109.47783 * 239.99748 * 2 1 3 28 28 H 1.08998 * 109.47382 * 119.99809 * 2 1 3 29 29 H 1.08996 * 109.47070 * 304.99275 * 3 2 1 30 30 H 1.08990 * 109.47244 * 304.86547 * 4 3 2 31 31 H 1.08995 * 109.47249 * 64.87333 * 4 3 2 32 32 H 1.09000 * 109.47131 * 64.44882 * 5 4 3 33 33 H 1.09010 * 109.46702 * 184.44267 * 5 4 3 34 34 H 1.08991 * 109.47644 * 304.44424 * 5 4 3 35 35 H 1.08996 * 109.47271 * 304.84152 * 6 3 2 36 36 H 1.08995 * 109.47000 * 184.83736 * 6 3 2 37 37 H 1.09001 * 109.46969 * 278.31071 * 8 7 6 38 38 H 1.08994 * 109.46977 * 38.31591 * 8 7 6 39 39 H 0.96998 * 120.00382 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.47041 * 79.97754 * 17 7 6 41 41 H 1.09000 * 109.47158 * 319.97491 * 17 7 6 42 42 H 1.07997 * 126.57820 * 359.92588 * 19 18 17 43 43 H 1.07999 * 125.78358 * 179.77407 * 20 19 18 44 44 H 1.09009 * 109.47376 * 275.31164 * 23 22 21 45 45 H 1.08997 * 109.47482 * 35.31476 * 23 22 21 46 46 H 1.08997 * 109.47055 * 155.31699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0382 3.6017 1.2571 6 6 3.5648 1.4444 -0.1257 7 7 3.9492 0.8927 -1.4318 8 6 5.3443 0.4330 -1.4192 9 6 5.5517 -0.5728 -2.5221 10 1 4.7414 -0.8109 -3.1952 11 6 6.7760 -1.1889 -2.6719 12 7 6.9572 -2.0663 -3.6347 13 14 8.1774 -0.7776 -1.5073 14 1 8.1370 -1.6953 -0.3405 15 1 9.4726 -0.9351 -2.2163 16 1 8.0366 0.6247 -1.0393 17 6 3.7277 1.8732 -2.5031 18 6 3.6525 1.1605 -3.8287 19 6 4.6566 1.1232 -4.8235 20 6 4.1732 0.3833 -5.8376 21 8 2.9399 -0.0339 -5.5082 22 6 2.6177 0.4369 -4.2923 23 6 1.3175 0.1952 -3.5698 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6054 1.9815 -0.8419 30 1 0.5559 2.0492 1.4389 31 1 2.1389 1.6406 2.1428 32 1 1.4751 4.1057 0.4716 33 1 1.8217 4.0704 2.2172 34 1 3.1048 3.6800 1.0468 35 1 3.9955 0.8335 0.6676 36 1 3.9352 2.4659 -0.0394 37 1 6.0085 1.2834 -1.5733 38 1 5.5652 -0.0311 -0.4580 39 1 7.8184 -2.5000 -3.7399 40 1 4.5525 2.5856 -2.5199 41 1 2.7929 2.4039 -2.3224 42 1 5.6241 1.6010 -4.7795 43 1 4.6903 0.1605 -6.7592 44 1 0.5777 0.9250 -3.8990 45 1 0.9598 -0.8102 -3.7919 46 1 1.4744 0.2961 -2.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414382955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:09 Heat of formation + Delta-G solvation = 3.168013 kcal Electronic energy + Delta-G solvation = -23604.652101 eV Core-core repulsion = 20495.692751 eV Total energy + Delta-G solvation = -3108.959350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.63809 -38.17764 -35.52318 -32.57389 -32.18478 -31.65101 -30.93099 -28.56243 -27.60938 -25.89555 -24.50513 -22.98185 -22.30183 -20.66282 -20.46492 -19.44505 -18.55469 -16.77581 -16.13794 -15.36002 -15.09672 -14.74110 -14.49119 -14.21302 -13.83455 -13.68505 -13.28916 -13.14293 -12.98780 -12.53740 -12.37877 -12.26729 -12.03261 -11.84005 -11.78004 -11.57710 -11.36915 -11.27725 -11.07853 -10.84456 -10.76136 -10.49383 -10.39478 -10.29099 -10.07417 -10.01844 -9.66811 -9.34687 -8.53839 -8.26476 -7.35372 -7.29678 -5.90693 -3.84224 2.68345 3.31662 3.39558 3.41233 3.58469 3.93666 4.51022 4.81056 5.00294 5.07596 5.28215 5.38347 5.42241 5.50317 5.57656 5.63288 5.68112 5.74270 5.79703 5.88214 5.94677 5.95898 5.99020 6.00599 6.05934 6.11558 6.17675 6.18090 6.30183 6.32614 6.34830 6.44925 6.48690 6.70945 6.73018 6.84615 6.90898 6.96649 7.00808 7.14380 7.50349 7.73173 7.98202 8.08122 8.14114 8.80209 9.27686 9.71570 11.21790 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.007469 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.038637 B = 3747.888392 C = 4982.996508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.155 4.155 6 C 0.054 3.946 7 N -0.519 5.519 8 C 0.163 3.837 9 C -0.487 4.487 10 H 0.093 0.907 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.863 3.137 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.271 1.271 17 C 0.135 3.865 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.058 4.058 21 O -0.188 6.188 22 C -0.018 4.018 23 C -0.072 4.072 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.027 0.973 37 H -0.014 1.014 38 H 0.018 0.982 39 H 0.259 0.741 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.189 0.811 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 8.939 4.744 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.212 4.212 6 C -0.075 4.075 7 N -0.243 5.243 8 C 0.037 3.963 9 C -0.526 4.526 10 H 0.111 0.889 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.691 3.309 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.196 1.196 17 C 0.008 3.992 18 C -0.135 4.135 19 C -0.179 4.179 20 C -0.124 4.124 21 O -0.085 6.085 22 C -0.068 4.068 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.004 0.996 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.206 0.794 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.558 8.239 4.414 14.865 hybrid contribution 1.983 0.745 0.845 2.280 sum -9.575 8.985 5.258 14.144 Atomic orbital electron populations 1.21862 0.97023 1.01017 1.01099 1.21549 0.94243 0.96360 1.03359 1.21202 0.95622 0.96345 0.96798 1.21614 1.00860 0.95319 0.98045 1.21850 1.01816 0.96604 1.00936 1.22251 0.94880 0.97471 0.92885 1.61931 1.25541 1.35850 1.00990 1.20267 0.83158 0.95131 0.97743 1.21217 0.98508 1.20094 1.12771 0.88909 1.24852 0.97948 0.95244 0.95260 1.69895 1.23840 1.28247 1.32106 0.87066 0.82940 0.79050 0.81834 1.20536 1.21534 1.19647 1.20246 0.98990 0.91745 0.88262 1.19688 0.93606 1.03663 0.96516 1.21378 0.99488 1.03448 0.93593 1.23522 0.84745 1.02380 1.01800 1.83891 1.31629 1.60884 1.32124 1.21822 0.98776 1.00746 0.85463 1.20347 0.90357 1.01613 1.00469 0.93244 0.93301 0.93049 0.89456 0.92736 0.91450 0.91941 0.92308 0.93020 0.93375 0.92434 0.91545 0.95538 0.99615 0.96428 0.93130 0.95048 0.91940 0.84816 0.79448 0.92054 0.91642 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.12 -1.59 4.62 -26.73 -0.12 -1.72 16 3 C -0.08 -1.06 1.70 -90.62 -0.15 -1.21 16 4 C -0.12 -1.33 5.27 -26.73 -0.14 -1.47 16 5 C -0.15 -1.61 9.77 37.16 0.36 -1.24 16 6 C 0.05 0.86 4.23 -3.82 -0.02 0.84 16 7 N -0.52 -10.18 3.71 -237.51 -0.88 -11.06 16 8 C 0.16 3.87 3.84 -4.98 -0.02 3.85 16 9 C -0.49 -13.44 7.87 -34.44 -0.27 -13.71 16 10 H 0.09 2.80 5.80 -52.49 -0.30 2.50 16 11 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 12 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 13 Si 0.86 21.61 27.41 -169.99 -4.66 16.95 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.27 -6.59 6.62 56.52 0.37 -6.22 16 17 C 0.14 2.51 4.73 -4.98 -0.02 2.49 16 18 C -0.13 -2.69 3.59 -104.74 -0.38 -3.07 16 19 C -0.16 -3.36 9.16 -39.70 -0.36 -3.72 16 20 C -0.06 -1.16 12.09 29.42 0.36 -0.80 16 21 O -0.19 -3.87 10.65 5.71 0.06 -3.81 16 22 C -0.02 -0.35 7.07 -35.63 -0.25 -0.60 16 23 C -0.07 -1.11 10.26 36.00 0.37 -0.74 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.49 6.46 -51.93 -0.34 0.15 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.42 5.97 -51.93 -0.31 1.11 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.89 6.58 -51.93 -0.34 0.55 16 30 H 0.06 0.63 6.35 -51.93 -0.33 0.30 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.06 0.64 6.27 -51.93 -0.33 0.32 16 35 H 0.07 1.11 7.56 -51.93 -0.39 0.71 16 36 H 0.03 0.41 6.11 -51.93 -0.32 0.09 16 37 H -0.01 -0.34 6.93 -51.93 -0.36 -0.70 16 38 H 0.02 0.43 6.83 -51.93 -0.35 0.07 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.03 0.60 7.70 -51.93 -0.40 0.20 16 41 H 0.06 1.00 6.48 -51.93 -0.34 0.67 16 42 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 43 H 0.19 3.14 8.06 -52.49 -0.42 2.72 16 44 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 1.53 4.82 -51.93 -0.25 1.28 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -30.64 349.36 -7.58 -38.22 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.75 Total: 1.69 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.39 Total: -20.61 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.11 Total: -37.70 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: 0.06 Total: -3.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.66 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.64 -7.58 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414382955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.391 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds