Wall clock time and date at job start Tue Mar 31 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47224 * 2 1 4 4 C 1.52998 * 109.47385 * 240.00306 * 2 1 3 5 5 C 1.53003 * 109.47185 * 120.00037 * 2 1 3 6 6 N 1.46494 * 109.47053 * 60.00409 * 5 2 1 7 7 C 1.46504 * 119.99632 * 271.13503 * 6 5 2 8 8 C 1.50702 * 109.47112 * 264.13262 * 7 6 5 9 9 H 1.08001 * 120.00298 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99958 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99900 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00098 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47449 * 60.00163 * 12 10 8 14 14 H 1.48502 * 109.47284 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47295 * 300.00205 * 12 10 8 16 16 C 1.34773 * 120.00609 * 91.13656 * 6 5 2 17 17 O 1.21281 * 119.99682 * 3.62165 * 16 6 5 18 18 C 1.50699 * 120.00238 * 183.62139 * 16 6 5 19 19 C 1.53001 * 119.29845 * 255.89234 * 18 16 6 20 20 C 1.52996 * 60.37840 * 248.69547 * 19 18 16 21 21 H 1.09005 * 119.29898 * 112.24265 * 20 19 18 22 22 C 1.54267 * 118.20013 * 266.38322 * 20 19 18 23 23 C 1.54886 * 104.19399 * 87.78992 * 22 20 19 24 24 C 1.54266 * 117.75924 * 51.08025 * 18 16 6 25 25 H 1.09007 * 109.46983 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47388 * 59.99733 * 1 2 3 27 27 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47198 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47155 * 300.00409 * 3 2 1 30 30 H 1.09007 * 109.47124 * 60.00106 * 3 2 1 31 31 H 1.09003 * 109.46734 * 300.00131 * 4 2 1 32 32 H 1.09004 * 109.47388 * 59.99631 * 4 2 1 33 33 H 1.08996 * 109.47523 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47155 * 299.99908 * 5 2 1 35 35 H 1.09007 * 109.46740 * 180.02562 * 5 2 1 36 36 H 1.09001 * 109.47174 * 24.13589 * 7 6 5 37 37 H 1.09001 * 109.46735 * 144.13584 * 7 6 5 38 38 H 0.97004 * 120.00335 * 179.97438 * 11 10 8 39 39 H 1.08991 * 117.46052 * 141.09612 * 19 18 16 40 40 H 1.09007 * 117.45906 * 356.29465 * 19 18 16 41 41 H 1.08997 * 110.49048 * 206.46984 * 22 20 19 42 42 H 1.09005 * 110.48635 * 329.11259 * 22 20 19 43 43 H 1.08998 * 110.76061 * 80.37670 * 23 22 20 44 44 H 1.09004 * 110.75753 * 203.74584 * 23 22 20 45 45 H 1.09000 * 110.48071 * 235.42468 * 24 18 16 46 46 H 1.08998 * 110.48876 * 357.93898 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.5517 -2.1025 1.2492 7 6 0.2600 -2.4227 1.8616 8 6 0.4783 -2.8998 3.2744 9 1 1.4792 -2.9581 3.6761 10 6 -0.5997 -3.2607 4.0545 11 7 -1.8185 -3.1882 3.5659 12 14 -0.3291 -3.8513 5.8058 13 1 0.3400 -2.7830 6.5908 14 1 -1.6386 -4.1749 6.4270 15 1 0.5264 -5.0651 5.7923 16 6 2.2908 -3.0785 0.6858 17 8 3.3889 -2.8255 0.2374 18 6 1.7528 -4.4843 0.6129 19 6 2.2889 -5.5422 1.5796 20 6 2.6160 -5.6452 0.0886 21 1 3.6439 -5.4987 -0.2434 22 6 1.6987 -6.5096 -0.8010 23 6 0.5768 -5.5389 -1.2460 24 6 0.3411 -4.6838 0.0238 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2495 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7208 1.2494 36 1 -0.3681 -1.5319 1.8719 37 1 -0.2310 -3.2068 1.2852 38 1 -2.5770 -3.4425 4.1146 39 1 1.5751 -6.2575 1.9882 40 1 3.0945 -5.2467 2.2518 41 1 2.2469 -6.8815 -1.6666 42 1 1.2816 -7.3377 -0.2278 43 1 0.9116 -4.9154 -2.0749 44 1 -0.3255 -6.0884 -1.5145 45 1 -0.2952 -5.2170 0.7301 46 1 -0.1024 -3.7230 -0.2378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421459659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:57 Heat of formation + Delta-G solvation = -24.017874 kcal Electronic energy + Delta-G solvation = -24063.307539 eV Core-core repulsion = 20953.169320 eV Total energy + Delta-G solvation = -3110.138219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14812 -38.21129 -36.29125 -34.27448 -32.27670 -31.21669 -28.52455 -27.47700 -26.92265 -26.65724 -25.59962 -23.08859 -22.46137 -20.78770 -19.92641 -18.50083 -17.68882 -16.69196 -15.92137 -15.50493 -14.97447 -14.65918 -14.38573 -14.24949 -13.67232 -13.28391 -13.03515 -12.84396 -12.58494 -12.45040 -12.27775 -11.96653 -11.82977 -11.60416 -11.29196 -11.21593 -11.05586 -10.91694 -10.89147 -10.69298 -10.61261 -10.59508 -10.41286 -10.25742 -10.18842 -9.94991 -9.80955 -9.52512 -9.14294 -8.81140 -8.42682 -7.56885 -6.11451 -4.15827 3.26140 3.31139 3.33083 3.40421 3.91503 4.25612 4.38236 4.90166 5.11573 5.19859 5.21264 5.21733 5.27224 5.32928 5.50566 5.61265 5.75688 5.83794 5.88923 5.90847 5.94924 5.99317 6.09760 6.14137 6.15302 6.20085 6.21344 6.25476 6.31983 6.33166 6.41215 6.51495 6.53025 6.57890 6.61209 6.68057 6.75506 6.76649 6.82592 6.94312 7.32344 7.65944 7.84297 8.17624 8.44194 8.87895 9.14513 9.49832 10.95152 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.009061 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.137916 B = 3089.471091 C = 4615.888064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.586 5.586 7 C 0.220 3.780 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.065 3.935 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.560 3.440 17 O -0.575 6.575 18 C -0.138 4.138 19 C -0.113 4.113 20 C -0.150 4.150 21 H 0.110 0.890 22 C -0.093 4.093 23 C -0.125 4.125 24 C -0.080 4.080 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.263 0.737 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 -0.014 -7.900 8.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.186 4.186 5 C 0.005 3.995 6 N -0.315 5.315 7 C 0.100 3.900 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.348 3.652 17 O -0.456 6.456 18 C -0.141 4.141 19 C -0.151 4.151 20 C -0.168 4.168 21 H 0.128 0.872 22 C -0.130 4.130 23 C -0.163 4.163 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.608 0.114 -8.069 8.840 hybrid contribution -0.057 -0.201 1.282 1.299 sum 3.551 -0.087 -6.787 7.660 Atomic orbital electron populations 1.21956 0.94368 1.02652 1.00736 1.20954 0.96188 0.95015 0.96426 1.21786 1.00707 0.95488 1.01372 1.21776 1.01031 1.00036 0.95721 1.21352 0.99185 0.82485 0.96509 1.48046 1.22504 1.05885 1.55034 1.19910 0.78988 0.97918 0.93160 1.21437 0.93174 1.44144 0.97677 0.92594 1.24860 0.94999 0.95585 0.98230 1.69902 0.98066 1.48269 1.37014 0.86672 0.77297 0.79386 0.84788 1.20345 1.21275 1.20167 1.19164 0.83971 0.85252 0.76799 1.90569 1.21236 1.83411 1.50412 1.21988 0.96100 0.89443 1.06587 1.22906 1.01960 0.98995 0.91220 1.23312 0.99197 0.98793 0.95544 0.87160 1.21934 0.95718 0.97201 0.98152 1.22725 0.97939 0.97487 0.98112 1.22006 0.93648 1.00314 0.95760 0.92655 0.93752 0.91578 0.92889 0.92949 0.92722 0.92832 0.94017 0.92541 0.90805 0.91122 0.94273 0.92605 0.92693 0.88525 0.88725 0.91713 0.91471 0.91767 0.91541 0.90133 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.21 37.15 0.27 -1.99 16 2 C -0.08 -1.36 0.84 -154.51 -0.13 -1.49 16 3 C -0.14 -1.81 8.47 37.16 0.31 -1.50 16 4 C -0.13 -2.11 7.24 37.16 0.27 -1.84 16 5 C 0.13 2.41 4.59 -4.04 -0.02 2.39 16 6 N -0.59 -12.25 2.00 -175.06 -0.35 -12.60 16 7 C 0.22 5.07 3.48 -5.19 -0.02 5.05 16 8 C -0.53 -13.51 9.30 -34.44 -0.32 -13.83 16 9 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 12 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.56 11.84 5.53 -10.99 -0.06 11.78 16 17 O -0.57 -13.05 15.00 5.56 0.08 -12.96 16 18 C -0.14 -2.63 1.99 -154.54 -0.31 -2.93 16 19 C -0.11 -2.04 9.85 -26.73 -0.26 -2.30 16 20 C -0.15 -2.47 6.55 -89.50 -0.59 -3.05 16 21 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 22 C -0.09 -1.27 6.63 -25.07 -0.17 -1.44 16 23 C -0.13 -1.79 6.91 -24.74 -0.17 -1.96 16 24 C -0.08 -1.41 4.50 -25.07 -0.11 -1.52 16 25 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.19 6.00 -51.93 -0.31 0.88 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.98 6.28 -51.93 -0.33 0.66 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 34 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 35 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 36 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 37 H 0.06 1.31 3.79 -51.93 -0.20 1.11 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 46 H 0.08 1.41 6.47 -51.93 -0.34 1.07 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -27.65 351.67 -8.81 -36.46 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.16 Total: 4.67 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.40 Total: -13.03 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.39 Total: -36.02 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.65 -8.81 -36.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421459659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.439 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds