Wall clock time and date at job start Tue Mar 31 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47316 * 2 1 4 4 C 1.52995 * 109.47146 * 239.99437 * 2 1 3 5 5 C 1.53010 * 109.47061 * 119.99763 * 2 1 3 6 6 N 1.46496 * 109.47094 * 59.99859 * 5 2 1 7 7 C 1.46501 * 120.00277 * 94.11760 * 6 5 2 8 8 C 1.50704 * 109.46993 * 88.18770 * 7 6 5 9 9 H 1.08000 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99803 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99984 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99703 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46878 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47429 * 299.99739 * 12 10 8 15 15 H 1.48495 * 109.47467 * 60.00231 * 12 10 8 16 16 C 1.34784 * 119.99884 * 274.11559 * 6 5 2 17 17 O 1.21276 * 120.00100 * 7.48120 * 16 6 5 18 18 C 1.50699 * 119.99880 * 187.47939 * 16 6 5 19 19 C 1.52998 * 119.29803 * 71.45018 * 18 16 6 20 20 C 1.52999 * 60.38124 * 111.30488 * 19 18 16 21 21 H 1.08991 * 119.30222 * 248.69771 * 20 19 18 22 22 C 1.54275 * 118.19617 * 93.61153 * 20 19 18 23 23 C 1.54890 * 104.19624 * 272.21783 * 22 20 19 24 24 C 1.54269 * 117.41178 * 277.11096 * 18 16 6 25 25 H 1.08996 * 109.47369 * 300.00264 * 1 2 3 26 26 H 1.09000 * 109.47180 * 60.00688 * 1 2 3 27 27 H 1.08997 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47354 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46789 * 299.99525 * 3 2 1 30 30 H 1.08994 * 109.47626 * 59.99543 * 3 2 1 31 31 H 1.08997 * 109.47328 * 300.00055 * 4 2 1 32 32 H 1.08991 * 109.47216 * 60.00205 * 4 2 1 33 33 H 1.09001 * 109.47073 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46559 * 299.99707 * 5 2 1 35 35 H 1.08994 * 109.46840 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.46894 * 328.19257 * 7 6 5 37 37 H 1.08994 * 109.47050 * 208.19308 * 7 6 5 38 38 H 0.96992 * 119.99792 * 179.97438 * 11 10 8 39 39 H 1.08996 * 117.46627 * 218.90759 * 19 18 16 40 40 H 1.09002 * 117.45976 * 3.70925 * 19 18 16 41 41 H 1.09000 * 110.48044 * 30.89283 * 22 20 19 42 42 H 1.08991 * 110.48015 * 153.40566 * 22 20 19 43 43 H 1.08997 * 110.75579 * 156.26170 * 23 22 20 44 44 H 1.08996 * 110.75455 * 279.44511 * 23 22 20 45 45 H 1.08994 * 110.48911 * 2.30737 * 24 18 16 46 46 H 1.09001 * 110.48445 * 124.95603 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1024 1.2494 7 6 2.3836 -3.1736 0.6956 8 6 3.2853 -3.7175 1.7737 9 1 3.2427 -3.3067 2.7716 10 6 4.1648 -4.7397 1.4859 11 7 4.2171 -5.2396 0.2706 12 14 5.2820 -5.4144 2.8223 13 1 6.1263 -6.4993 2.2606 14 1 6.1523 -4.3263 3.3361 15 1 4.4562 -5.9536 3.9324 16 6 0.3369 -2.3877 1.7590 17 8 -0.4069 -1.4897 2.0925 18 6 -0.0971 -3.8224 1.9143 19 6 0.5524 -4.6882 2.9958 20 6 -0.9166 -4.2831 3.1326 21 1 -1.2065 -3.5846 3.9175 22 6 -1.9925 -5.2515 2.5991 23 6 -2.1555 -4.8556 1.1106 24 6 -0.6839 -4.5253 0.6728 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -0.2073 2.1393 35 1 3.1299 -0.7208 1.2495 36 1 2.9895 -2.7784 -0.1197 37 1 1.7445 -3.9723 0.3193 38 1 4.8361 -5.9584 0.0682 39 1 0.7662 -5.7275 2.7466 40 1 1.2703 -4.2076 3.6605 41 1 -1.6526 -6.2836 2.6843 42 1 -2.9301 -5.1138 3.1375 43 1 -2.5498 -5.6895 0.5300 44 1 -2.7976 -3.9804 1.0118 45 1 -0.6618 -3.8586 -0.1892 46 1 -0.1368 -5.4438 0.4602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421459661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:09 Heat of formation + Delta-G solvation = -28.317871 kcal Electronic energy + Delta-G solvation = -23995.032673 eV Core-core repulsion = 20884.707992 eV Total energy + Delta-G solvation = -3110.324681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.07329 -38.20544 -36.16191 -34.27430 -32.28681 -31.10895 -28.30973 -27.52477 -26.88166 -26.64274 -25.65564 -23.00331 -22.40181 -20.92231 -19.87959 -18.45834 -17.53897 -16.54679 -16.13071 -15.54103 -15.04024 -14.64225 -14.37868 -14.19904 -13.62889 -13.22100 -12.93525 -12.72149 -12.64176 -12.38367 -12.31216 -11.94655 -11.79882 -11.47563 -11.32922 -11.17886 -11.01782 -10.88933 -10.84936 -10.78903 -10.63765 -10.57824 -10.45079 -10.25304 -10.17020 -10.00514 -9.74308 -9.58142 -9.10818 -8.72516 -8.47512 -7.57341 -6.12314 -4.17369 3.24903 3.30451 3.32228 3.45289 3.89800 4.23248 4.37106 4.93882 5.11861 5.20534 5.23892 5.25228 5.28268 5.36836 5.52046 5.61152 5.76682 5.82150 5.92339 5.93181 5.97206 5.99280 6.08868 6.14390 6.18644 6.21383 6.24991 6.28383 6.34686 6.43582 6.47144 6.52589 6.56768 6.61254 6.62272 6.68198 6.77358 6.80894 6.93112 6.96819 7.30150 7.66443 7.81866 8.14762 8.45284 8.86081 9.13528 9.48464 10.94345 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.009208 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.809065 B = 3040.006264 C = 4780.454890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.138 4.138 5 C 0.133 3.867 6 N -0.586 5.586 7 C 0.238 3.762 8 C -0.525 4.525 9 H 0.057 0.943 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.889 3.111 13 H -0.287 1.287 14 H -0.278 1.278 15 H -0.275 1.275 16 C 0.555 3.445 17 O -0.566 6.566 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.076 4.076 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 3.401 -0.217 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.195 4.195 5 C 0.009 3.991 6 N -0.315 5.315 7 C 0.118 3.882 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.136 4.136 11 N -0.531 5.531 12 Si 0.717 3.283 13 H -0.213 1.213 14 H -0.203 1.203 15 H -0.201 1.201 16 C 0.343 3.657 17 O -0.447 6.447 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.174 4.174 21 H 0.124 0.876 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.113 4.113 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.481 3.724 -0.185 8.358 hybrid contribution 0.969 -0.443 0.629 1.237 sum -6.512 3.280 0.444 7.305 Atomic orbital electron populations 1.21862 0.93979 1.02213 1.00087 1.20986 0.96460 0.94881 0.96329 1.21788 1.00704 0.95633 1.01236 1.21897 1.00802 1.00852 0.95940 1.21338 0.98809 0.82425 0.96491 1.48111 1.16589 1.08400 1.58446 1.19493 0.89867 0.84568 0.94273 1.21400 1.20121 1.18215 0.96669 0.92476 1.24869 0.96973 0.96419 0.95368 1.69905 1.37443 1.26727 1.19012 0.86695 0.80797 0.78664 0.82126 1.21299 1.20341 1.20095 1.19268 0.81229 0.88571 0.76671 1.90585 1.53786 1.47936 1.52420 1.21970 1.06048 0.94227 0.92592 1.22960 0.92409 0.99778 0.98720 1.23409 0.92573 1.01805 0.99617 0.87628 1.21887 0.97369 0.98226 0.95374 1.23016 0.96769 1.00592 0.95457 1.22181 0.94381 0.99780 0.94999 0.92359 0.94767 0.92393 0.92798 0.93011 0.92938 0.91869 0.93784 0.92738 0.91760 0.90515 0.94483 0.94112 0.92675 0.88733 0.88121 0.91509 0.91721 0.91779 0.91530 0.91579 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 6.94 37.16 0.26 -1.87 16 2 C -0.09 -1.40 0.84 -154.51 -0.13 -1.53 16 3 C -0.14 -1.85 8.47 37.16 0.31 -1.54 16 4 C -0.14 -2.26 7.33 37.16 0.27 -1.99 16 5 C 0.13 2.49 4.60 -4.04 -0.02 2.47 16 6 N -0.59 -12.13 1.97 -175.06 -0.34 -12.48 16 7 C 0.24 5.47 3.87 -5.19 -0.02 5.45 16 8 C -0.53 -13.13 7.92 -34.44 -0.27 -13.40 16 9 H 0.06 1.46 7.63 -52.49 -0.40 1.06 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 12 Si 0.89 20.24 29.54 -169.99 -5.02 15.21 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.55 11.54 5.69 -10.98 -0.06 11.48 16 17 O -0.57 -12.55 13.72 5.56 0.08 -12.48 16 18 C -0.15 -2.74 1.20 -154.54 -0.18 -2.92 16 19 C -0.10 -1.88 8.54 -26.73 -0.23 -2.11 16 20 C -0.16 -2.60 6.75 -89.49 -0.60 -3.20 16 21 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 22 C -0.09 -1.26 6.63 -25.07 -0.17 -1.43 16 23 C -0.12 -1.70 6.96 -23.54 -0.16 -1.86 16 24 C -0.08 -1.28 5.48 -23.87 -0.13 -1.41 16 25 H 0.06 1.05 7.46 -51.93 -0.39 0.66 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.11 5.70 -51.93 -0.30 0.82 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.16 6.26 -51.93 -0.32 0.83 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 35 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 36 H 0.04 0.90 6.48 -51.93 -0.34 0.57 16 37 H 0.04 0.99 6.06 -51.93 -0.31 0.67 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.10 2.00 7.73 -51.93 -0.40 1.60 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -26.94 351.68 -8.81 -35.75 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.32 Total: 4.23 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.23 Total: -12.24 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.39 Total: -35.78 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.94 -8.81 -35.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421459661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.429 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds