Wall clock time and date at job start Tue Mar 31 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47316 * 2 1 4 4 C 1.52995 * 109.47146 * 239.99437 * 2 1 3 5 5 C 1.53010 * 109.47061 * 119.99763 * 2 1 3 6 6 N 1.46496 * 109.47094 * 59.99859 * 5 2 1 7 7 C 1.46501 * 120.00277 * 94.11760 * 6 5 2 8 8 C 1.50704 * 109.46993 * 88.18770 * 7 6 5 9 9 H 1.08000 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99803 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99984 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99703 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46878 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47429 * 299.99739 * 12 10 8 15 15 H 1.48495 * 109.47467 * 60.00231 * 12 10 8 16 16 C 1.34784 * 119.99884 * 274.11559 * 6 5 2 17 17 O 1.21276 * 120.00100 * 7.48120 * 16 6 5 18 18 C 1.50699 * 119.99880 * 187.47939 * 16 6 5 19 19 C 1.52998 * 119.29803 * 71.45018 * 18 16 6 20 20 C 1.52999 * 60.38124 * 111.30488 * 19 18 16 21 21 H 1.08991 * 119.30222 * 248.69771 * 20 19 18 22 22 C 1.54275 * 118.19617 * 93.61153 * 20 19 18 23 23 C 1.54890 * 104.19624 * 272.21783 * 22 20 19 24 24 C 1.54269 * 117.41178 * 277.11096 * 18 16 6 25 25 H 1.08996 * 109.47369 * 300.00264 * 1 2 3 26 26 H 1.09000 * 109.47180 * 60.00688 * 1 2 3 27 27 H 1.08997 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47354 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46789 * 299.99525 * 3 2 1 30 30 H 1.08994 * 109.47626 * 59.99543 * 3 2 1 31 31 H 1.08997 * 109.47328 * 300.00055 * 4 2 1 32 32 H 1.08991 * 109.47216 * 60.00205 * 4 2 1 33 33 H 1.09001 * 109.47073 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46559 * 299.99707 * 5 2 1 35 35 H 1.08994 * 109.46840 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.46894 * 328.19257 * 7 6 5 37 37 H 1.08994 * 109.47050 * 208.19308 * 7 6 5 38 38 H 0.96992 * 119.99792 * 179.97438 * 11 10 8 39 39 H 1.08996 * 117.46627 * 218.90759 * 19 18 16 40 40 H 1.09002 * 117.45976 * 3.70925 * 19 18 16 41 41 H 1.09000 * 110.48044 * 30.89283 * 22 20 19 42 42 H 1.08991 * 110.48015 * 153.40566 * 22 20 19 43 43 H 1.08997 * 110.75579 * 156.26170 * 23 22 20 44 44 H 1.08996 * 110.75455 * 279.44511 * 23 22 20 45 45 H 1.08994 * 110.48911 * 2.30737 * 24 18 16 46 46 H 1.09001 * 110.48445 * 124.95603 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1024 1.2494 7 6 2.3836 -3.1736 0.6956 8 6 3.2853 -3.7175 1.7737 9 1 3.2427 -3.3067 2.7716 10 6 4.1648 -4.7397 1.4859 11 7 4.2171 -5.2396 0.2706 12 14 5.2820 -5.4144 2.8223 13 1 6.1263 -6.4993 2.2606 14 1 6.1523 -4.3263 3.3361 15 1 4.4562 -5.9536 3.9324 16 6 0.3369 -2.3877 1.7590 17 8 -0.4069 -1.4897 2.0925 18 6 -0.0971 -3.8224 1.9143 19 6 0.5524 -4.6882 2.9958 20 6 -0.9166 -4.2831 3.1326 21 1 -1.2065 -3.5846 3.9175 22 6 -1.9925 -5.2515 2.5991 23 6 -2.1555 -4.8556 1.1106 24 6 -0.6839 -4.5253 0.6728 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -0.2073 2.1393 35 1 3.1299 -0.7208 1.2495 36 1 2.9895 -2.7784 -0.1197 37 1 1.7445 -3.9723 0.3193 38 1 4.8361 -5.9584 0.0682 39 1 0.7662 -5.7275 2.7466 40 1 1.2703 -4.2076 3.6605 41 1 -1.6526 -6.2836 2.6843 42 1 -2.9301 -5.1138 3.1375 43 1 -2.5498 -5.6895 0.5300 44 1 -2.7976 -3.9804 1.0118 45 1 -0.6618 -3.8586 -0.1892 46 1 -0.1368 -5.4438 0.4602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421459661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:07 Heat of formation + Delta-G solvation = -39.714190 kcal Electronic energy + Delta-G solvation = -23995.526854 eV Core-core repulsion = 20884.707992 eV Total energy + Delta-G solvation = -3110.818862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 5.81 seconds Orbital eigenvalues (eV) -41.60769 -39.62334 -37.68533 -36.00490 -34.19024 -32.39800 -29.71961 -29.27407 -28.12504 -28.07677 -27.17917 -24.87494 -23.81435 -22.36664 -21.18402 -19.84625 -19.15292 -18.47549 -17.70300 -17.17695 -16.60729 -16.36805 -15.72118 -15.65116 -15.02376 -14.62276 -14.35856 -14.30398 -14.06621 -13.96309 -13.83887 -13.44188 -13.23820 -13.04164 -12.84653 -12.65457 -12.57978 -12.48086 -12.46143 -12.12097 -12.05676 -11.97467 -11.84158 -11.76428 -11.60037 -11.49588 -11.45284 -11.13294 -10.55297 -10.50647 -10.27653 -9.30001 -8.11939 -6.23161 1.42519 1.44128 1.50368 1.80411 2.31424 2.47151 2.79337 3.18891 3.60320 3.79871 3.85113 3.89433 3.93866 4.00387 4.08987 4.28359 4.48464 4.53906 4.57826 4.60398 4.71211 4.76071 4.80824 4.83870 4.88055 4.94516 4.98425 5.01788 5.02846 5.05106 5.07293 5.09936 5.17456 5.22340 5.24059 5.27012 5.35832 5.37831 5.50008 5.51907 5.55520 5.74684 5.96650 6.17256 6.66622 6.91102 7.39971 7.51530 8.93209 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.009208 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.809065 B = 3040.006264 C = 4780.454890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.132 4.132 5 C 0.129 3.871 6 N -0.588 5.588 7 C 0.258 3.742 8 C -0.526 4.526 9 H 0.047 0.953 10 C 0.027 3.973 11 N -0.919 5.919 12 Si 0.943 3.057 13 H -0.285 1.285 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.550 3.450 17 O -0.583 6.583 18 C -0.169 4.169 19 C -0.110 4.110 20 C -0.135 4.135 21 H 0.103 0.897 22 C -0.086 4.086 23 C -0.111 4.111 24 C -0.075 4.075 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 3.456 -0.090 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.189 4.189 5 C 0.005 3.995 6 N -0.317 5.317 7 C 0.137 3.863 8 C -0.565 4.565 9 H 0.066 0.934 10 C -0.173 4.173 11 N -0.559 5.559 12 Si 0.770 3.230 13 H -0.210 1.210 14 H -0.202 1.202 15 H -0.195 1.195 16 C 0.339 3.661 17 O -0.465 6.465 18 C -0.171 4.171 19 C -0.147 4.147 20 C -0.154 4.154 21 H 0.121 0.879 22 C -0.123 4.123 23 C -0.148 4.148 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.321 3.791 -0.051 9.145 hybrid contribution 1.234 -0.413 0.592 1.429 sum -7.087 3.379 0.541 7.870 Atomic orbital electron populations 1.21734 0.94323 1.00575 1.00510 1.20960 0.96023 0.96455 0.94842 1.21737 1.01166 0.93425 1.02402 1.21822 1.00505 0.99591 0.96967 1.21478 0.98540 0.81703 0.97730 1.48082 1.16483 1.08741 1.58371 1.19089 0.89255 0.84632 0.93294 1.21516 1.20307 1.18138 0.96515 0.93444 1.25471 0.98148 0.96695 0.97004 1.69997 1.38200 1.27246 1.20450 0.85836 0.79192 0.78016 0.80004 1.21040 1.20242 1.19527 1.19633 0.80917 0.89458 0.76091 1.90559 1.54039 1.48711 1.53195 1.22130 1.07463 0.93231 0.94324 1.22839 0.93715 0.99455 0.98691 1.23543 0.92225 1.01534 0.98058 0.87926 1.21951 0.97259 0.97979 0.95093 1.22987 0.94424 1.01566 0.95861 1.22188 0.96465 0.98849 0.93823 0.93505 0.92607 0.95027 0.92078 0.91129 0.92503 0.94473 0.91508 0.93069 0.92355 0.91032 0.95976 0.95388 0.92656 0.88680 0.90175 0.90209 0.89287 0.89107 0.91626 0.92809 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.84 6.94 71.98 0.50 -3.34 16 2 C -0.08 -2.62 0.84 -52.18 -0.04 -2.67 16 3 C -0.13 -3.28 8.47 71.98 0.61 -2.67 16 4 C -0.13 -4.26 7.33 71.98 0.53 -3.74 16 5 C 0.13 4.89 4.60 86.38 0.40 5.29 16 6 N -0.59 -25.05 1.97 -826.14 -1.63 -26.68 16 7 C 0.26 12.26 3.87 85.63 0.33 12.60 16 8 C -0.53 -26.81 7.92 25.60 0.20 -26.61 16 9 H 0.05 2.48 7.63 -2.91 -0.02 2.45 16 10 C 0.03 1.38 5.46 84.65 0.46 1.85 16 11 N -0.92 -50.05 13.29 21.45 0.28 -49.76 16 12 Si 0.94 41.55 29.54 68.60 2.03 43.58 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.55 23.42 5.69 87.66 0.50 23.91 16 17 O -0.58 -26.22 13.72 -3.02 -0.04 -26.26 16 18 C -0.17 -6.40 1.20 -52.20 -0.06 -6.47 16 19 C -0.11 -4.11 8.54 30.59 0.26 -3.85 16 20 C -0.13 -4.38 6.75 -10.06 -0.07 -4.45 16 21 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 22 C -0.09 -2.14 6.63 31.67 0.21 -1.93 16 23 C -0.11 -2.88 6.96 32.66 0.23 -2.65 16 24 C -0.08 -2.54 5.48 32.45 0.18 -2.36 16 25 H 0.05 1.66 7.46 -2.39 -0.02 1.64 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 1.21 5.70 -2.39 -0.01 1.20 16 28 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.38 6.26 -2.39 -0.01 1.36 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.06 2.27 7.67 -2.39 -0.02 2.25 16 35 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 36 H 0.02 1.12 6.48 -2.39 -0.02 1.10 16 37 H 0.03 1.41 6.06 -2.39 -0.01 1.39 16 38 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.08 3.29 7.73 -2.39 -0.02 3.27 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -57.80 351.68 5.80 -52.00 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.92 Total: 24.22 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.23 Total: -17.10 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.34 Total: -76.44 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -57.80 5.80 -52.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421459661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -57.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds