Wall clock time and date at job start Tue Mar 31 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.52991 * 109.47514 * 295.25701 * 3 2 1 5 5 C 1.53002 * 109.47155 * 175.25403 * 3 2 1 6 6 N 1.46507 * 109.46952 * 55.25998 * 3 2 1 7 7 C 1.46499 * 119.99676 * 237.40746 * 6 3 2 8 8 C 1.50703 * 109.47274 * 263.94167 * 7 6 3 9 9 H 1.08004 * 119.99693 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00263 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47266 * 89.99561 * 12 10 8 14 14 H 1.48501 * 109.46732 * 209.99956 * 12 10 8 15 15 H 1.48497 * 109.47029 * 329.99523 * 12 10 8 16 16 C 1.34773 * 120.00323 * 57.40237 * 6 3 2 17 17 O 1.21286 * 119.99788 * 2.78328 * 16 6 3 18 18 C 1.50693 * 120.00084 * 182.77686 * 16 6 3 19 19 C 1.52864 * 119.73520 * 260.04268 * 18 16 6 20 20 C 1.53000 * 60.49930 * 248.84878 * 19 18 16 21 21 H 1.08997 * 119.29599 * 112.26155 * 20 19 18 22 22 C 1.54263 * 118.19686 * 266.40076 * 20 19 18 23 23 C 1.54897 * 104.19184 * 87.79303 * 22 20 19 24 24 C 1.54268 * 117.41059 * 55.67555 * 18 16 6 25 25 H 1.09003 * 109.46667 * 65.42340 * 1 2 3 26 26 H 1.08995 * 109.47485 * 185.42568 * 1 2 3 27 27 H 1.09001 * 109.47091 * 305.42806 * 1 2 3 28 28 H 1.08997 * 109.46825 * 240.00395 * 2 1 3 29 29 H 1.08995 * 109.47111 * 120.00572 * 2 1 3 30 30 H 1.08999 * 109.47427 * 178.67927 * 4 3 2 31 31 H 1.09007 * 109.47442 * 298.67510 * 4 3 2 32 32 H 1.09000 * 109.47488 * 58.67607 * 4 3 2 33 33 H 1.09007 * 109.47012 * 300.00197 * 5 3 2 34 34 H 1.08993 * 109.47168 * 60.00196 * 5 3 2 35 35 H 1.09002 * 109.47412 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.47436 * 23.94030 * 7 6 3 37 37 H 1.08996 * 109.47651 * 143.93799 * 7 6 3 38 38 H 0.97000 * 120.00152 * 179.97438 * 11 10 8 39 39 H 1.08999 * 117.40726 * 141.18159 * 19 18 16 40 40 H 1.09005 * 117.41813 * 356.50692 * 19 18 16 41 41 H 1.08993 * 110.48862 * 329.11598 * 22 20 19 42 42 H 1.09004 * 110.60157 * 206.52217 * 22 20 19 43 43 H 1.09001 * 110.75223 * 203.73819 * 23 22 20 44 44 H 1.09004 * 110.75430 * 80.37342 * 23 22 20 45 45 H 1.08999 * 110.48884 * 357.68795 * 24 18 16 46 46 H 1.09008 * 110.48532 * 235.17765 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6299 2.1285 -1.3045 5 6 3.5654 1.4441 0.1194 6 7 1.4607 2.1652 1.1351 7 6 0.6801 3.3836 0.9062 8 6 1.5670 4.5891 1.0830 9 1 2.6080 4.4605 1.3406 10 6 1.0494 5.8562 0.9170 11 7 -0.2183 6.0128 0.6039 12 14 2.1489 7.3504 1.1356 13 1 2.7699 7.7027 -0.1665 14 1 1.3377 8.4948 1.6230 15 1 3.2132 7.0414 2.1240 16 6 1.6458 1.7092 2.3898 17 8 2.3338 0.7294 2.5835 18 6 0.9980 2.4169 3.5519 19 6 1.8194 3.3850 4.4033 20 6 1.3537 2.0589 5.0077 21 1 2.0925 1.2961 5.2535 22 6 0.0271 2.0426 5.7949 23 6 -1.0521 1.7811 4.7149 24 6 -0.5330 2.6006 3.5075 25 1 -0.3633 0.4274 -0.9346 26 1 -0.3634 -1.0230 0.0972 27 1 -0.3633 0.5957 0.8374 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9729 3.1630 -1.2944 31 1 2.0801 1.6047 -2.1478 32 1 0.5443 2.1066 -1.4009 33 1 3.8576 0.9553 1.0488 34 1 3.9965 0.9063 -0.7250 35 1 3.9288 2.4717 0.1198 36 1 0.2790 3.3732 -0.1073 37 1 -0.1412 3.4287 1.6214 38 1 -0.5826 6.9042 0.4875 39 1 1.3259 4.2945 4.7460 40 1 2.8789 3.4856 4.1680 41 1 -0.1418 3.0050 6.2778 42 1 0.0294 1.2412 6.5338 43 1 -2.0240 2.1497 5.0430 44 1 -1.1031 0.7204 4.4687 45 1 -0.9379 2.2054 2.5759 46 1 -0.7944 3.6528 3.6200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421531716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:21 Heat of formation + Delta-G solvation = -17.359700 kcal Electronic energy + Delta-G solvation = -24381.359776 eV Core-core repulsion = 21271.510278 eV Total energy + Delta-G solvation = -3109.849499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.21779 -38.35395 -35.92805 -33.58341 -31.88613 -31.18800 -30.02737 -27.86456 -27.65076 -26.24501 -23.30004 -23.08575 -22.43909 -21.35087 -20.08502 -18.85289 -17.32350 -16.59199 -15.93181 -15.33073 -14.93583 -14.60255 -14.34999 -14.20204 -13.84875 -13.00767 -12.78124 -12.73612 -12.62829 -12.46209 -12.25451 -11.90370 -11.73866 -11.48469 -11.31440 -11.13387 -11.05923 -11.01108 -10.85151 -10.67881 -10.61170 -10.57282 -10.28277 -10.24491 -10.11523 -9.95547 -9.74261 -9.48943 -9.10828 -8.63029 -8.39852 -7.54170 -6.10269 -4.14089 3.24501 3.32243 3.34802 3.44842 3.86464 4.25580 4.38616 4.90948 5.13084 5.21792 5.23714 5.28276 5.42771 5.51955 5.61116 5.67984 5.78351 5.79659 5.85196 6.00211 6.02147 6.08074 6.10623 6.15986 6.19115 6.24271 6.26522 6.32352 6.35245 6.46746 6.49509 6.54515 6.59797 6.66763 6.69224 6.73357 6.77010 6.90540 6.98868 7.01828 7.36683 7.72731 7.86434 8.19395 8.49159 8.91080 9.18497 9.51510 10.96433 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.009640 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.282559 B = 2903.945210 C = 4218.877276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.179 3.821 4 C -0.149 4.149 5 C -0.158 4.158 6 N -0.578 5.578 7 C 0.220 3.780 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.065 3.935 11 N -0.894 5.894 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.561 3.439 17 O -0.573 6.573 18 C -0.137 4.137 19 C -0.110 4.110 20 C -0.152 4.152 21 H 0.110 0.890 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.079 4.079 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.262 0.738 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -7.197 3.154 7.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.094 3.906 4 C -0.207 4.207 5 C -0.216 4.216 6 N -0.308 5.308 7 C 0.101 3.899 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.533 5.533 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.349 3.651 17 O -0.454 6.454 18 C -0.140 4.140 19 C -0.147 4.147 20 C -0.171 4.171 21 H 0.128 0.872 22 C -0.130 4.130 23 C -0.162 4.162 24 C -0.116 4.116 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.374 -7.549 3.164 8.193 hybrid contribution 0.606 1.162 -0.118 1.316 sum 0.232 -6.386 3.046 7.079 Atomic orbital electron populations 1.21724 0.96138 1.00456 1.01924 1.21931 0.96035 0.96731 1.02493 1.20179 0.92822 0.90941 0.86683 1.22115 1.01692 1.02036 0.94827 1.22170 0.95235 1.02064 1.02142 1.48213 1.51729 1.26861 1.03988 1.19793 0.91607 0.79749 0.98770 1.21429 0.96491 0.90485 1.47333 0.92550 1.24855 0.94915 0.98665 0.95247 1.69912 1.12406 1.22842 1.48129 0.86651 0.80677 0.82628 0.78452 1.20776 1.21237 1.19882 1.19145 0.79833 0.82848 0.83261 1.90512 1.41402 1.28183 1.85346 1.21985 0.95782 1.05285 0.90933 1.22864 0.99615 0.92920 0.99346 1.23341 0.99421 1.00263 0.94063 0.87226 1.21921 0.92816 1.01261 0.96965 1.22717 0.97905 1.00172 0.95408 1.21944 0.90923 1.00886 0.97848 0.93002 0.93771 0.92530 0.92356 0.90082 0.90412 0.92953 0.92011 0.91090 0.93188 0.92434 0.93993 0.93240 0.92807 0.88591 0.88755 0.91523 0.91751 0.91591 0.91757 0.90999 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.40 37.16 0.35 -1.97 16 2 C -0.13 -2.26 4.64 -26.73 -0.12 -2.38 16 3 C 0.18 3.31 0.73 -131.82 -0.10 3.22 16 4 C -0.15 -2.63 6.92 37.15 0.26 -2.38 16 5 C -0.16 -2.89 8.44 37.16 0.31 -2.57 16 6 N -0.58 -11.93 1.45 -160.18 -0.23 -12.16 16 7 C 0.22 5.05 4.17 -5.19 -0.02 5.02 16 8 C -0.52 -13.07 9.02 -34.44 -0.31 -13.38 16 9 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 12 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.56 11.76 6.28 -10.99 -0.07 11.69 16 17 O -0.57 -12.77 13.08 5.55 0.07 -12.70 16 18 C -0.14 -2.59 1.87 -154.50 -0.29 -2.88 16 19 C -0.11 -1.98 9.86 -26.80 -0.26 -2.25 16 20 C -0.15 -2.51 6.57 -89.39 -0.59 -3.10 16 21 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 22 C -0.09 -1.27 6.63 -25.07 -0.17 -1.44 16 23 C -0.12 -1.78 6.91 -24.74 -0.17 -1.95 16 24 C -0.08 -1.38 4.50 -25.07 -0.11 -1.49 16 25 H 0.05 0.78 6.80 -51.93 -0.35 0.43 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.00 7.04 -51.93 -0.37 0.64 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.53 6.23 -51.93 -0.32 1.20 16 30 H 0.08 1.55 7.35 -51.93 -0.38 1.17 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.09 5.62 -51.93 -0.29 0.80 16 33 H 0.07 1.40 6.27 -51.92 -0.33 1.08 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 1.01 5.48 -51.93 -0.28 0.73 16 37 H 0.05 1.17 4.16 -51.93 -0.22 0.95 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.32 6.83 -51.93 -0.35 0.97 16 46 H 0.08 1.48 8.07 -51.92 -0.42 1.06 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -27.16 347.73 -8.53 -35.68 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.93 Total: 6.07 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.39 Total: -14.27 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.50 Total: -35.47 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.16 -8.53 -35.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421531716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds