Wall clock time and date at job start Tue Mar 31 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.52991 * 109.47514 * 295.25701 * 3 2 1 5 5 C 1.53002 * 109.47155 * 175.25403 * 3 2 1 6 6 N 1.46507 * 109.46952 * 55.25998 * 3 2 1 7 7 C 1.46499 * 119.99676 * 237.40746 * 6 3 2 8 8 C 1.50703 * 109.47274 * 263.94167 * 7 6 3 9 9 H 1.08004 * 119.99693 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00263 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47266 * 89.99561 * 12 10 8 14 14 H 1.48501 * 109.46732 * 209.99956 * 12 10 8 15 15 H 1.48497 * 109.47029 * 329.99523 * 12 10 8 16 16 C 1.34773 * 120.00323 * 57.40237 * 6 3 2 17 17 O 1.21286 * 119.99788 * 2.78328 * 16 6 3 18 18 C 1.50693 * 120.00084 * 182.77686 * 16 6 3 19 19 C 1.52864 * 119.73520 * 260.04268 * 18 16 6 20 20 C 1.53000 * 60.49930 * 248.84878 * 19 18 16 21 21 H 1.08997 * 119.29599 * 112.26155 * 20 19 18 22 22 C 1.54263 * 118.19686 * 266.40076 * 20 19 18 23 23 C 1.54897 * 104.19184 * 87.79303 * 22 20 19 24 24 C 1.54268 * 117.41059 * 55.67555 * 18 16 6 25 25 H 1.09003 * 109.46667 * 65.42340 * 1 2 3 26 26 H 1.08995 * 109.47485 * 185.42568 * 1 2 3 27 27 H 1.09001 * 109.47091 * 305.42806 * 1 2 3 28 28 H 1.08997 * 109.46825 * 240.00395 * 2 1 3 29 29 H 1.08995 * 109.47111 * 120.00572 * 2 1 3 30 30 H 1.08999 * 109.47427 * 178.67927 * 4 3 2 31 31 H 1.09007 * 109.47442 * 298.67510 * 4 3 2 32 32 H 1.09000 * 109.47488 * 58.67607 * 4 3 2 33 33 H 1.09007 * 109.47012 * 300.00197 * 5 3 2 34 34 H 1.08993 * 109.47168 * 60.00196 * 5 3 2 35 35 H 1.09002 * 109.47412 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.47436 * 23.94030 * 7 6 3 37 37 H 1.08996 * 109.47651 * 143.93799 * 7 6 3 38 38 H 0.97000 * 120.00152 * 179.97438 * 11 10 8 39 39 H 1.08999 * 117.40726 * 141.18159 * 19 18 16 40 40 H 1.09005 * 117.41813 * 356.50692 * 19 18 16 41 41 H 1.08993 * 110.48862 * 329.11598 * 22 20 19 42 42 H 1.09004 * 110.60157 * 206.52217 * 22 20 19 43 43 H 1.09001 * 110.75223 * 203.73819 * 23 22 20 44 44 H 1.09004 * 110.75430 * 80.37342 * 23 22 20 45 45 H 1.08999 * 110.48884 * 357.68795 * 24 18 16 46 46 H 1.09008 * 110.48532 * 235.17765 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6299 2.1285 -1.3045 5 6 3.5654 1.4441 0.1194 6 7 1.4607 2.1652 1.1351 7 6 0.6801 3.3836 0.9062 8 6 1.5670 4.5891 1.0830 9 1 2.6080 4.4605 1.3406 10 6 1.0494 5.8562 0.9170 11 7 -0.2183 6.0128 0.6039 12 14 2.1489 7.3504 1.1356 13 1 2.7699 7.7027 -0.1665 14 1 1.3377 8.4948 1.6230 15 1 3.2132 7.0414 2.1240 16 6 1.6458 1.7092 2.3898 17 8 2.3338 0.7294 2.5835 18 6 0.9980 2.4169 3.5519 19 6 1.8194 3.3850 4.4033 20 6 1.3537 2.0589 5.0077 21 1 2.0925 1.2961 5.2535 22 6 0.0271 2.0426 5.7949 23 6 -1.0521 1.7811 4.7149 24 6 -0.5330 2.6006 3.5075 25 1 -0.3633 0.4274 -0.9346 26 1 -0.3634 -1.0230 0.0972 27 1 -0.3633 0.5957 0.8374 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9729 3.1630 -1.2944 31 1 2.0801 1.6047 -2.1478 32 1 0.5443 2.1066 -1.4009 33 1 3.8576 0.9553 1.0488 34 1 3.9965 0.9063 -0.7250 35 1 3.9288 2.4717 0.1198 36 1 0.2790 3.3732 -0.1073 37 1 -0.1412 3.4287 1.6214 38 1 -0.5826 6.9042 0.4875 39 1 1.3259 4.2945 4.7460 40 1 2.8789 3.4856 4.1680 41 1 -0.1418 3.0050 6.2778 42 1 0.0294 1.2412 6.5338 43 1 -2.0240 2.1497 5.0430 44 1 -1.1031 0.7204 4.4687 45 1 -0.9379 2.2054 2.5759 46 1 -0.7944 3.6528 3.6200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421531716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:19 Heat of formation + Delta-G solvation = -28.815553 kcal Electronic energy + Delta-G solvation = -24381.856539 eV Core-core repulsion = 21271.510278 eV Total energy + Delta-G solvation = -3110.346262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -41.74338 -39.77639 -37.54126 -35.38187 -33.68339 -32.48615 -31.42297 -29.38201 -29.18672 -27.92894 -24.84361 -24.74096 -23.89301 -22.80484 -21.40544 -20.27260 -18.90837 -18.53711 -17.56761 -16.91202 -16.37699 -16.36744 -15.82246 -15.71296 -15.27611 -14.44746 -14.35023 -14.16169 -14.06631 -13.95823 -13.83292 -13.46915 -13.32368 -12.97949 -12.87282 -12.78476 -12.66015 -12.54458 -12.34834 -12.21358 -12.00520 -11.94123 -11.81386 -11.73790 -11.66088 -11.53353 -11.33780 -11.06637 -10.50830 -10.49877 -10.13043 -9.25863 -8.10610 -6.19999 1.38672 1.42362 1.49989 1.82237 2.30191 2.47739 2.82526 3.19543 3.58351 3.75371 3.82166 3.94647 4.02094 4.08561 4.21892 4.32655 4.42343 4.50472 4.56907 4.64618 4.68803 4.70905 4.79367 4.81119 4.82399 4.90671 4.93176 5.00467 5.03857 5.05590 5.07524 5.17155 5.19856 5.26179 5.28054 5.33969 5.36843 5.40254 5.48933 5.51125 5.54983 5.79026 6.08244 6.23673 6.70209 6.97886 7.44027 7.57135 8.94363 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.009640 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.282559 B = 2903.945210 C = 4218.877276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.165 3.835 4 C -0.140 4.140 5 C -0.150 4.150 6 N -0.579 5.579 7 C 0.236 3.764 8 C -0.518 4.518 9 H 0.040 0.960 10 C 0.027 3.973 11 N -0.918 5.918 12 Si 0.939 3.061 13 H -0.280 1.280 14 H -0.282 1.282 15 H -0.275 1.275 16 C 0.554 3.446 17 O -0.590 6.590 18 C -0.166 4.166 19 C -0.118 4.118 20 C -0.130 4.130 21 H 0.107 0.893 22 C -0.086 4.086 23 C -0.116 4.116 24 C -0.075 4.075 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -7.951 3.517 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.081 3.919 4 C -0.198 4.198 5 C -0.208 4.208 6 N -0.308 5.308 7 C 0.116 3.884 8 C -0.557 4.557 9 H 0.058 0.942 10 C -0.172 4.172 11 N -0.558 5.558 12 Si 0.766 3.234 13 H -0.206 1.206 14 H -0.207 1.207 15 H -0.200 1.200 16 C 0.343 3.657 17 O -0.473 6.473 18 C -0.168 4.168 19 C -0.155 4.155 20 C -0.149 4.149 21 H 0.125 0.875 22 C -0.123 4.123 23 C -0.153 4.153 24 C -0.112 4.112 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.682 -8.308 3.523 9.049 hybrid contribution 0.749 1.362 -0.271 1.577 sum 0.066 -6.946 3.252 7.670 Atomic orbital electron populations 1.21682 0.95490 1.01305 1.01331 1.21853 0.96538 0.95195 1.02798 1.20494 0.92969 0.92045 0.86373 1.22023 1.01622 1.00601 0.95519 1.22092 0.95226 1.01007 1.02506 1.48203 1.51481 1.26277 1.04823 1.19448 0.91242 0.80026 0.97685 1.21500 0.95843 0.91572 1.46771 0.94219 1.25404 0.95881 1.00735 0.95198 1.69986 1.13474 1.23337 1.49016 0.85845 0.79233 0.80087 0.78236 1.20592 1.20744 1.19992 1.19520 0.79609 0.82764 0.83798 1.90489 1.42230 1.28962 1.85641 1.22138 0.96589 1.06503 0.91616 1.22849 0.98750 0.93967 0.99968 1.23459 1.00327 0.98528 0.92580 0.87543 1.21973 0.90444 1.03022 0.96871 1.22686 0.99070 0.99694 0.93839 1.21867 0.90079 1.00470 0.98814 0.92130 0.91809 0.94934 0.89578 0.92096 0.93242 0.89710 0.92304 0.92938 0.90092 0.94342 0.95186 0.93875 0.92722 0.88087 0.90194 0.90224 0.89207 0.89267 0.91560 0.92627 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.40 71.98 0.68 -3.66 16 2 C -0.13 -4.08 4.64 30.59 0.14 -3.94 16 3 C 0.17 6.09 0.73 3.60 0.00 6.09 16 4 C -0.14 -4.85 6.92 71.98 0.50 -4.35 16 5 C -0.15 -5.45 8.44 71.98 0.61 -4.84 16 6 N -0.58 -24.37 1.45 -779.09 -1.13 -25.50 16 7 C 0.24 11.12 4.17 85.63 0.36 11.48 16 8 C -0.52 -26.71 9.02 25.60 0.23 -26.48 16 9 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 10 C 0.03 1.43 5.46 84.65 0.46 1.89 16 11 N -0.92 -49.83 13.29 21.45 0.28 -49.55 16 12 Si 0.94 42.25 29.54 68.60 2.03 44.28 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 C 0.55 23.68 6.28 87.66 0.55 24.23 16 17 O -0.59 -26.71 13.08 -3.05 -0.04 -26.75 16 18 C -0.17 -6.33 1.87 -52.18 -0.10 -6.42 16 19 C -0.12 -4.28 9.86 30.55 0.30 -3.98 16 20 C -0.13 -4.18 6.57 -10.00 -0.07 -4.24 16 21 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 22 C -0.09 -2.14 6.63 31.67 0.21 -1.93 16 23 C -0.12 -3.07 6.91 31.89 0.22 -2.85 16 24 C -0.07 -2.62 4.50 31.67 0.14 -2.48 16 25 H 0.06 1.74 6.80 -2.39 -0.02 1.72 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.03 1.14 7.04 -2.39 -0.02 1.13 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.25 6.23 -2.39 -0.01 2.24 16 30 H 0.05 1.98 7.35 -2.39 -0.02 1.96 16 31 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.06 2.05 5.62 -2.39 -0.01 2.03 16 33 H 0.05 2.09 6.27 -2.38 -0.01 2.07 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 1.49 5.48 -2.38 -0.01 1.47 16 37 H 0.04 2.11 4.16 -2.39 -0.01 2.10 16 38 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.06 2.09 6.83 -2.39 -0.02 2.08 16 46 H 0.06 2.43 8.07 -2.38 -0.02 2.41 16 Total: -1.00 -58.70 347.73 6.32 -52.38 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.94 Total: 26.62 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.24 Total: -21.48 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -0.85 Total: -75.05 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.04 Total: -26.75 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -58.70 6.32 -52.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421531716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.568 kcal (2) G-P(sol) polarization free energy of solvation -58.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds