Wall clock time and date at job start Tue Mar 31 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 C 1.52995 * 109.47779 * 295.00306 * 3 2 1 5 5 C 1.53000 * 109.46708 * 174.99665 * 3 2 1 6 6 N 1.46504 * 109.46638 * 55.00734 * 3 2 1 7 7 C 1.46495 * 120.00694 * 66.64621 * 6 3 2 8 8 C 1.50706 * 109.46684 * 89.99745 * 7 6 3 9 9 H 1.07996 * 120.00592 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99430 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00113 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99500 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47469 * 59.99784 * 12 10 8 14 14 H 1.48506 * 109.46703 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47382 * 299.99553 * 12 10 8 16 16 C 1.34785 * 119.99269 * 246.36956 * 6 3 2 17 17 O 1.21283 * 119.99856 * 200.47301 * 16 6 3 18 18 C 1.50699 * 119.99923 * 20.47587 * 16 6 3 19 19 C 1.52999 * 119.29955 * 66.74513 * 18 16 6 20 20 C 1.53874 * 121.32864 * 138.57754 * 18 16 6 21 21 H 1.08998 * 121.33122 * 0.56543 * 20 18 16 22 22 C 1.54273 * 106.59993 * 138.06120 * 20 18 16 23 23 C 1.54889 * 104.19089 * 336.38991 * 22 20 18 24 24 C 1.54269 * 117.41426 * 272.39905 * 18 16 6 25 25 H 1.08998 * 109.47235 * 312.14716 * 1 2 3 26 26 H 1.08999 * 109.47927 * 72.14815 * 1 2 3 27 27 H 1.09009 * 109.47253 * 192.14915 * 1 2 3 28 28 H 1.09004 * 109.46495 * 240.00821 * 2 1 3 29 29 H 1.08996 * 109.47548 * 120.00860 * 2 1 3 30 30 H 1.08999 * 109.47295 * 178.48990 * 4 3 2 31 31 H 1.09005 * 109.46957 * 298.49086 * 4 3 2 32 32 H 1.09000 * 109.47282 * 58.48261 * 4 3 2 33 33 H 1.08993 * 109.47783 * 300.00461 * 5 3 2 34 34 H 1.09007 * 109.47001 * 60.00911 * 5 3 2 35 35 H 1.09006 * 109.46721 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.47400 * 209.99587 * 7 6 3 37 37 H 1.09000 * 109.47055 * 330.00013 * 7 6 3 38 38 H 0.96999 * 119.99197 * 180.02562 * 11 10 8 39 39 H 1.08998 * 117.46119 * 218.90291 * 19 18 16 40 40 H 1.09005 * 117.46346 * 3.70715 * 19 18 16 41 41 H 1.08995 * 110.48762 * 217.71161 * 22 20 18 42 42 H 1.08995 * 110.59596 * 95.12430 * 22 20 18 43 43 H 1.08995 * 110.76142 * 279.62306 * 23 22 20 44 44 H 1.09000 * 110.91018 * 156.32933 * 23 22 20 45 45 H 1.08999 * 110.48242 * 2.31016 * 24 18 16 46 46 H 1.08993 * 110.48396 * 124.95328 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1267 -1.3072 5 6 3.5647 1.4444 0.1258 6 7 1.4557 2.1669 1.1316 7 6 1.8146 1.7961 2.5027 8 6 3.0177 2.5917 2.9396 9 1 3.4695 3.3027 2.2638 10 6 3.5415 2.4118 4.2022 11 7 2.9910 1.5464 5.0254 12 14 5.0323 3.3984 4.7441 13 1 4.7127 4.8477 4.6913 14 1 5.3961 3.0225 6.1339 15 1 6.1729 3.1098 3.8381 16 6 0.5924 3.1781 0.9110 17 8 0.3949 4.0062 1.7748 18 6 -0.1275 3.2798 -0.4090 19 6 -1.1555 2.2109 -0.7855 20 6 -1.6157 3.6643 -0.4812 21 1 -2.1889 3.8830 0.4197 22 6 -1.7600 4.6480 -1.6608 23 6 -0.3442 5.2542 -1.8252 24 6 0.5805 4.0431 -1.5474 25 1 -0.3633 0.6896 0.7619 26 1 -0.3635 0.3150 -0.9781 27 1 -0.3634 -1.0047 0.2163 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.9751 3.1623 -1.2958 31 1 2.0916 1.6036 -2.1476 32 1 0.5502 2.1015 -1.4097 33 1 3.8531 0.9571 1.0571 34 1 3.9994 0.9054 -0.7161 35 1 3.9280 2.4721 0.1263 36 1 0.9775 2.0087 3.1675 37 1 2.0487 0.7323 2.5419 38 1 3.3595 1.4202 5.9138 39 1 -1.1840 1.8850 -1.8252 40 1 -1.3735 1.4405 -0.0458 41 1 -2.4833 5.4275 -1.4213 42 1 -2.0563 4.1194 -2.5668 43 1 -0.1752 6.0449 -1.0944 44 1 -0.1965 5.6285 -2.8382 45 1 1.5654 4.3812 -1.2250 46 1 0.6632 3.4148 -2.4342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421531718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:27 Heat of formation + Delta-G solvation = 85.949039 kcal Electronic energy + Delta-G solvation = -24550.612689 eV Core-core repulsion = 21445.242993 eV Total energy + Delta-G solvation = -3105.369696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.56745 -37.90064 -36.64100 -33.19368 -32.08723 -31.48165 -31.02359 -29.34349 -27.20670 -25.43643 -23.92941 -23.44076 -22.45916 -21.01991 -20.17253 -19.63160 -17.40514 -16.50564 -16.27198 -15.21362 -15.15471 -14.89848 -14.47678 -14.03931 -13.92019 -13.57926 -13.29727 -12.91951 -12.83142 -12.41761 -12.17456 -12.00232 -11.85376 -11.60514 -11.43606 -11.27954 -11.15441 -10.89540 -10.84224 -10.71130 -10.61911 -10.51726 -10.33611 -10.19092 -9.96536 -9.68295 -9.52047 -9.37775 -8.97468 -8.70342 -8.35762 -7.49559 -5.97250 -3.99533 3.34938 3.36829 3.39782 3.44582 3.58320 3.98474 4.50322 4.53794 4.77334 4.86921 4.98144 5.18473 5.27405 5.33560 5.36797 5.45969 5.51777 5.55470 5.64503 5.66318 5.73084 5.76688 5.85486 5.90146 5.96575 6.00899 6.08578 6.13410 6.17648 6.25485 6.26788 6.34251 6.38219 6.42811 6.51010 6.54713 6.59114 6.74093 7.05973 7.19348 7.46125 7.70460 8.00075 8.32100 8.57626 8.99049 9.18970 9.64216 11.10673 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.006489 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.131140 B = 4313.909682 C = 4759.286707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C 0.173 3.827 4 C -0.246 4.246 5 C -0.147 4.147 6 N -0.588 5.588 7 C 0.252 3.748 8 C -0.511 4.511 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.546 3.454 17 O -0.528 6.528 18 C -0.141 4.141 19 C -0.161 4.161 20 C -0.153 4.153 21 H 0.112 0.888 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.075 4.075 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -0.868 -16.581 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C 0.087 3.913 4 C -0.301 4.301 5 C -0.205 4.205 6 N -0.320 5.320 7 C 0.133 3.867 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.331 3.669 17 O -0.404 6.404 18 C -0.145 4.145 19 C -0.198 4.198 20 C -0.171 4.171 21 H 0.130 0.870 22 C -0.128 4.128 23 C -0.176 4.176 24 C -0.112 4.112 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.546 -0.504 -15.897 17.200 hybrid contribution 1.094 0.373 0.551 1.280 sum -5.452 -0.132 -15.346 16.287 Atomic orbital electron populations 1.22481 0.96498 1.01245 1.01771 1.21884 0.96087 0.96765 1.01911 1.20278 0.93414 0.91126 0.86466 1.24927 1.06150 1.03008 0.96016 1.22104 0.94091 1.02261 1.02032 1.48177 1.42876 1.32629 1.08292 1.19166 0.96163 0.95614 0.75723 1.21412 1.12379 1.22287 0.98972 0.92460 1.24920 0.97435 0.95483 0.96415 1.69919 1.41069 1.35230 1.07661 0.86630 0.82940 0.80757 0.77522 1.20300 1.21324 1.20346 1.19131 0.79864 0.81339 0.86536 1.90675 1.65272 1.38154 1.46334 1.22383 0.92125 1.03353 0.96599 1.24543 1.00496 0.91977 1.02738 1.23969 0.97000 0.95705 1.00453 0.87013 1.21901 0.97177 0.97233 0.96537 1.22920 0.94912 0.98670 1.01132 1.22885 0.97542 0.94995 0.95776 0.91420 0.91956 0.93532 0.91986 0.91431 0.88712 0.92957 0.86774 0.90508 0.93534 0.92622 0.94986 0.94880 0.92860 0.88318 0.85676 0.91500 0.91598 0.91196 0.91549 0.90049 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 7.32 37.16 0.27 -1.94 16 2 C -0.13 -1.92 4.84 -26.73 -0.13 -2.05 16 3 C 0.17 2.91 0.76 -131.82 -0.10 2.81 16 4 C -0.25 -3.33 4.69 37.15 0.17 -3.16 16 5 C -0.15 -2.59 7.60 37.16 0.28 -2.31 16 6 N -0.59 -12.35 1.43 -160.18 -0.23 -12.57 16 7 C 0.25 6.54 4.31 -5.19 -0.02 6.52 16 8 C -0.51 -14.47 7.85 -34.44 -0.27 -14.74 16 9 H 0.06 1.64 7.51 -52.49 -0.39 1.25 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.26 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.55 11.53 6.12 -10.98 -0.07 11.47 16 17 O -0.53 -13.81 16.99 5.56 0.09 -13.71 16 18 C -0.14 -2.15 0.85 -154.54 -0.13 -2.29 16 19 C -0.16 -2.00 5.56 -25.42 -0.14 -2.14 16 20 C -0.15 -2.09 6.87 -88.19 -0.61 -2.69 16 21 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 22 C -0.09 -1.00 6.64 -25.07 -0.17 -1.17 16 23 C -0.14 -1.61 6.91 -24.74 -0.17 -1.78 16 24 C -0.08 -0.96 3.94 -25.07 -0.10 -1.06 16 25 H 0.07 1.08 4.73 -51.93 -0.25 0.83 16 26 H 0.06 0.70 5.03 -51.93 -0.26 0.44 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.14 7.12 -51.93 -0.37 0.77 16 30 H 0.10 1.34 3.71 -82.74 -0.31 1.04 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 1.43 1.21 -77.23 -0.09 1.33 16 33 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 36 H 0.03 0.94 7.78 -51.93 -0.40 0.54 16 37 H 0.03 0.87 6.82 -51.93 -0.35 0.52 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 0.98 7.37 -51.93 -0.38 0.60 16 40 H 0.13 1.63 4.51 -51.93 -0.23 1.40 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.16 6.26 -51.93 -0.32 0.83 16 46 H 0.08 0.86 6.12 -51.93 -0.32 0.54 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -32.16 326.89 -8.16 -40.33 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.40 Total: 2.82 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.27 Total: -12.94 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.51 Total: -38.69 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.16 -8.16 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421531718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.277 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds