Wall clock time and date at job start Tue Mar 31 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 C 1.52995 * 109.47779 * 295.00306 * 3 2 1 5 5 C 1.53000 * 109.46708 * 174.99665 * 3 2 1 6 6 N 1.46504 * 109.46638 * 55.00734 * 3 2 1 7 7 C 1.46495 * 120.00694 * 66.64621 * 6 3 2 8 8 C 1.50706 * 109.46684 * 89.99745 * 7 6 3 9 9 H 1.07996 * 120.00592 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99430 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00113 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99500 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47469 * 59.99784 * 12 10 8 14 14 H 1.48506 * 109.46703 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47382 * 299.99553 * 12 10 8 16 16 C 1.34785 * 119.99269 * 246.36956 * 6 3 2 17 17 O 1.21283 * 119.99856 * 200.47301 * 16 6 3 18 18 C 1.50699 * 119.99923 * 20.47587 * 16 6 3 19 19 C 1.52999 * 119.29955 * 66.74513 * 18 16 6 20 20 C 1.53874 * 121.32864 * 138.57754 * 18 16 6 21 21 H 1.08998 * 121.33122 * 0.56543 * 20 18 16 22 22 C 1.54273 * 106.59993 * 138.06120 * 20 18 16 23 23 C 1.54889 * 104.19089 * 336.38991 * 22 20 18 24 24 C 1.54269 * 117.41426 * 272.39905 * 18 16 6 25 25 H 1.08998 * 109.47235 * 312.14716 * 1 2 3 26 26 H 1.08999 * 109.47927 * 72.14815 * 1 2 3 27 27 H 1.09009 * 109.47253 * 192.14915 * 1 2 3 28 28 H 1.09004 * 109.46495 * 240.00821 * 2 1 3 29 29 H 1.08996 * 109.47548 * 120.00860 * 2 1 3 30 30 H 1.08999 * 109.47295 * 178.48990 * 4 3 2 31 31 H 1.09005 * 109.46957 * 298.49086 * 4 3 2 32 32 H 1.09000 * 109.47282 * 58.48261 * 4 3 2 33 33 H 1.08993 * 109.47783 * 300.00461 * 5 3 2 34 34 H 1.09007 * 109.47001 * 60.00911 * 5 3 2 35 35 H 1.09006 * 109.46721 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.47400 * 209.99587 * 7 6 3 37 37 H 1.09000 * 109.47055 * 330.00013 * 7 6 3 38 38 H 0.96999 * 119.99197 * 180.02562 * 11 10 8 39 39 H 1.08998 * 117.46119 * 218.90291 * 19 18 16 40 40 H 1.09005 * 117.46346 * 3.70715 * 19 18 16 41 41 H 1.08995 * 110.48762 * 217.71161 * 22 20 18 42 42 H 1.08995 * 110.59596 * 95.12430 * 22 20 18 43 43 H 1.08995 * 110.76142 * 279.62306 * 23 22 20 44 44 H 1.09000 * 110.91018 * 156.32933 * 23 22 20 45 45 H 1.08999 * 110.48242 * 2.31016 * 24 18 16 46 46 H 1.08993 * 110.48396 * 124.95328 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1267 -1.3072 5 6 3.5647 1.4444 0.1258 6 7 1.4557 2.1669 1.1316 7 6 1.8146 1.7961 2.5027 8 6 3.0177 2.5917 2.9396 9 1 3.4695 3.3027 2.2638 10 6 3.5415 2.4118 4.2022 11 7 2.9910 1.5464 5.0254 12 14 5.0323 3.3984 4.7441 13 1 4.7127 4.8477 4.6913 14 1 5.3961 3.0225 6.1339 15 1 6.1729 3.1098 3.8381 16 6 0.5924 3.1781 0.9110 17 8 0.3949 4.0062 1.7748 18 6 -0.1275 3.2798 -0.4090 19 6 -1.1555 2.2109 -0.7855 20 6 -1.6157 3.6643 -0.4812 21 1 -2.1889 3.8830 0.4197 22 6 -1.7600 4.6480 -1.6608 23 6 -0.3442 5.2542 -1.8252 24 6 0.5805 4.0431 -1.5474 25 1 -0.3633 0.6896 0.7619 26 1 -0.3635 0.3150 -0.9781 27 1 -0.3634 -1.0047 0.2163 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.9751 3.1623 -1.2958 31 1 2.0916 1.6036 -2.1476 32 1 0.5502 2.1015 -1.4097 33 1 3.8531 0.9571 1.0571 34 1 3.9994 0.9054 -0.7161 35 1 3.9280 2.4721 0.1263 36 1 0.9775 2.0087 3.1675 37 1 2.0487 0.7323 2.5419 38 1 3.3595 1.4202 5.9138 39 1 -1.1840 1.8850 -1.8252 40 1 -1.3735 1.4405 -0.0458 41 1 -2.4833 5.4275 -1.4213 42 1 -2.0563 4.1194 -2.5668 43 1 -0.1752 6.0449 -1.0944 44 1 -0.1965 5.6285 -2.8382 45 1 1.5654 4.3812 -1.2250 46 1 0.6632 3.4148 -2.4342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421531718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:26 Heat of formation + Delta-G solvation = 66.843706 kcal Electronic energy + Delta-G solvation = -24551.441158 eV Core-core repulsion = 21445.242993 eV Total energy + Delta-G solvation = -3106.198165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82043 -39.29530 -38.26907 -35.24306 -33.43293 -32.95712 -32.14900 -30.60511 -29.18672 -26.59757 -25.44210 -25.00395 -23.73841 -22.45755 -21.39342 -20.80142 -18.73972 -18.62768 -17.65314 -17.06144 -16.52185 -16.27002 -15.93229 -15.56853 -15.16797 -14.81859 -14.60841 -14.31790 -14.23962 -14.00321 -13.72027 -13.37218 -13.23478 -13.01358 -12.86896 -12.76568 -12.63468 -12.48446 -12.43125 -12.08713 -12.01469 -11.84412 -11.82674 -11.58231 -11.39046 -11.29033 -10.78559 -10.65493 -10.49815 -10.27165 -10.08215 -9.30179 -8.21350 -6.33387 1.30343 1.34922 1.41902 1.75632 2.26771 2.40749 2.60891 3.06704 3.51938 3.66848 3.72735 3.86210 3.99994 4.11024 4.25455 4.32164 4.47277 4.55959 4.56265 4.67291 4.76160 4.78985 4.79868 4.84584 4.89140 4.93991 4.98155 5.00542 5.03227 5.11451 5.16561 5.18257 5.22222 5.25815 5.27513 5.35192 5.39408 5.44978 5.51377 5.57023 5.60045 5.67552 5.98886 6.09935 6.72515 6.92929 7.29780 7.53107 8.84820 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.006489 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.131140 B = 4313.909682 C = 4759.286707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.126 4.126 3 C 0.161 3.839 4 C -0.240 4.240 5 C -0.143 4.143 6 N -0.588 5.588 7 C 0.273 3.727 8 C -0.522 4.522 9 H 0.046 0.954 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.959 3.041 13 H -0.282 1.282 14 H -0.276 1.276 15 H -0.261 1.261 16 C 0.535 3.465 17 O -0.599 6.599 18 C -0.160 4.160 19 C -0.134 4.134 20 C -0.160 4.160 21 H 0.082 0.918 22 C -0.081 4.081 23 C -0.138 4.138 24 C -0.068 4.068 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.035 0.965 36 H -0.019 1.019 37 H 0.023 0.977 38 H 0.265 0.735 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -1.493 -21.056 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.164 4.164 3 C 0.077 3.923 4 C -0.295 4.295 5 C -0.201 4.201 6 N -0.318 5.318 7 C 0.152 3.848 8 C -0.561 4.561 9 H 0.064 0.936 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.783 3.217 13 H -0.208 1.208 14 H -0.201 1.201 15 H -0.186 1.186 16 C 0.324 3.676 17 O -0.480 6.480 18 C -0.163 4.163 19 C -0.170 4.170 20 C -0.179 4.179 21 H 0.100 0.900 22 C -0.119 4.119 23 C -0.176 4.176 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.054 0.946 36 H -0.001 1.001 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.165 0.835 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.058 0.942 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.656 -1.160 -20.419 21.508 hybrid contribution 1.114 0.544 2.023 2.373 sum -5.542 -0.616 -18.396 19.222 Atomic orbital electron populations 1.22472 0.95219 1.01331 1.02586 1.21884 0.97231 0.95151 1.02126 1.20730 0.92551 0.92433 0.86605 1.24944 1.07385 1.02654 0.94494 1.22067 0.95273 1.01032 1.01730 1.48202 1.43090 1.33039 1.07516 1.18532 0.93400 0.94567 0.78338 1.21601 1.13043 1.22180 0.99233 0.93592 1.25788 1.00484 0.96521 0.96459 1.70037 1.42532 1.36519 1.08026 0.85606 0.79699 0.78559 0.77794 1.20836 1.20121 1.18561 1.20282 0.79150 0.79826 0.88350 1.90620 1.67252 1.40754 1.49389 1.22285 0.92765 1.06939 0.94339 1.24702 0.96539 0.90784 1.04950 1.24135 0.95013 0.97791 1.00936 0.89960 1.21924 0.96828 0.96703 0.96407 1.22929 0.95027 0.97478 1.02124 1.22924 0.96310 0.95617 0.95654 0.94703 0.88492 0.92345 0.88184 0.94735 0.89401 0.89277 0.85325 0.94395 0.89446 0.94616 1.00051 0.95939 0.92591 0.83526 0.86673 0.91264 0.88032 0.94198 0.88207 0.92240 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.32 71.98 0.53 -3.43 16 2 C -0.13 -3.55 4.84 30.59 0.15 -3.40 16 3 C 0.16 5.27 0.76 3.60 0.00 5.28 16 4 C -0.24 -5.56 4.69 71.98 0.34 -5.23 16 5 C -0.14 -5.04 7.60 71.98 0.55 -4.49 16 6 N -0.59 -25.99 1.43 -779.07 -1.11 -27.10 16 7 C 0.27 15.34 4.31 85.64 0.37 15.71 16 8 C -0.52 -31.43 7.85 25.60 0.20 -31.23 16 9 H 0.05 2.80 7.51 -2.91 -0.02 2.78 16 10 C 0.01 0.34 5.46 84.66 0.46 0.80 16 11 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 12 Si 0.96 47.24 29.54 68.60 2.03 49.27 16 13 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 16 C 0.53 23.81 6.12 87.66 0.54 24.34 16 17 O -0.60 -34.03 16.99 -3.04 -0.05 -34.08 16 18 C -0.16 -4.69 0.85 -52.20 -0.04 -4.74 16 19 C -0.13 -2.86 5.56 31.44 0.17 -2.68 16 20 C -0.16 -4.14 6.87 -9.22 -0.06 -4.20 16 21 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 22 C -0.08 -1.50 6.64 31.67 0.21 -1.29 16 23 C -0.14 -2.79 6.91 31.88 0.22 -2.57 16 24 C -0.07 -1.54 3.94 31.67 0.12 -1.41 16 25 H 0.03 1.10 4.73 -2.39 -0.01 1.09 16 26 H 0.10 1.69 5.03 -2.39 -0.01 1.68 16 27 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.03 1.18 7.12 -2.39 -0.02 1.17 16 30 H 0.09 2.25 3.71 -31.33 -0.12 2.14 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.13 2.58 1.21 -26.15 -0.03 2.55 16 33 H 0.04 1.60 6.92 -2.39 -0.02 1.58 16 34 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.03 1.36 7.93 -2.38 -0.02 1.34 16 36 H -0.02 -1.21 7.78 -2.39 -0.02 -1.23 16 37 H 0.02 1.30 6.82 -2.39 -0.02 1.28 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.15 1.81 7.37 -2.39 -0.02 1.79 16 40 H 0.12 2.77 4.51 -2.38 -0.01 2.76 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.62 6.26 -2.39 -0.01 1.60 16 46 H 0.12 1.79 6.12 -2.39 -0.01 1.77 16 Total: -1.00 -79.62 326.89 5.74 -73.88 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.84 Total: 14.56 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.75 Total: -18.54 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -0.83 Total: -85.09 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -79.62 5.74 -73.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421531718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.723 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds