Wall clock time and date at job start Tue Mar 31 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47408 * 120.00312 * 2 1 3 5 5 C 1.53006 * 109.47047 * 64.99955 * 4 2 1 6 6 N 1.46501 * 109.47063 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99556 * 269.99781 * 6 5 4 8 8 C 1.50701 * 109.46940 * 263.66168 * 7 6 5 9 9 H 1.07994 * 119.99970 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99811 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99952 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99770 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47259 * 90.00509 * 12 10 8 14 14 H 1.48498 * 109.46983 * 209.99915 * 12 10 8 15 15 H 1.48501 * 109.47374 * 330.00129 * 12 10 8 16 16 C 1.34773 * 120.00062 * 89.99436 * 6 5 4 17 17 O 1.21280 * 120.00049 * 5.59759 * 16 6 5 18 18 C 1.50704 * 120.00015 * 185.59286 * 16 6 5 19 19 C 1.53001 * 119.29761 * 263.42718 * 18 16 6 20 20 C 1.52996 * 60.37848 * 247.75811 * 19 18 16 21 21 H 1.09005 * 119.29969 * 111.30715 * 20 19 18 22 22 C 1.54467 * 118.37480 * 266.37252 * 20 19 18 23 23 C 1.54886 * 104.10138 * 87.57527 * 22 20 19 24 24 C 1.54261 * 117.41024 * 57.77052 * 18 16 6 25 25 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46720 * 299.99734 * 1 2 3 27 27 H 1.08994 * 109.47576 * 59.99662 * 1 2 3 28 28 H 1.09001 * 109.46720 * 240.00266 * 2 1 3 29 29 H 1.09004 * 109.47401 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47417 * 300.00264 * 3 2 1 31 31 H 1.09001 * 109.47007 * 60.00442 * 3 2 1 32 32 H 1.08995 * 109.47124 * 305.00119 * 4 2 1 33 33 H 1.09002 * 109.47158 * 184.99368 * 4 2 1 34 34 H 1.08995 * 109.47024 * 60.00103 * 5 4 2 35 35 H 1.09002 * 109.46663 * 299.99717 * 5 4 2 36 36 H 1.09000 * 109.47376 * 23.66960 * 7 6 5 37 37 H 1.09009 * 109.46542 * 143.66588 * 7 6 5 38 38 H 0.96998 * 119.99818 * 179.97438 * 11 10 8 39 39 H 1.09005 * 117.45954 * 355.35858 * 19 18 16 40 40 H 1.08994 * 117.45787 * 140.18203 * 19 18 16 41 41 H 1.08993 * 110.40216 * 328.98739 * 22 20 19 42 42 H 1.09005 * 110.66207 * 206.28368 * 22 20 19 43 43 H 1.08997 * 110.75598 * 203.89881 * 23 22 20 44 44 H 1.09001 * 110.75940 * 80.70611 * 23 22 20 45 45 H 1.08997 * 110.48960 * 358.90347 * 24 18 16 46 46 H 1.09000 * 110.48512 * 236.25750 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4514 -3.5041 2.3827 8 6 3.3225 -4.9711 2.0625 9 1 2.3487 -5.4000 1.8781 10 6 4.4479 -5.7656 2.0049 11 7 5.6338 -5.2433 2.2300 12 14 4.2882 -7.5837 1.6072 13 1 4.3786 -7.7789 0.1378 14 1 5.3821 -8.3343 2.2743 15 1 2.9770 -8.0835 2.0932 16 6 1.3501 -2.9527 3.4862 17 8 0.2133 -2.5313 3.4558 18 6 1.8982 -3.5511 4.7561 19 6 1.6042 -5.0171 5.0808 20 6 0.9930 -3.9135 5.9465 21 1 -0.0832 -3.7433 5.9126 22 6 1.7459 -3.4809 7.2240 23 6 2.7227 -2.3837 6.7330 24 6 3.1721 -2.9145 5.3490 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6445 1.2950 34 1 2.0699 -2.6550 0.3001 35 1 0.5490 -2.2724 1.1420 36 1 4.0759 -3.0215 1.6309 37 1 3.9084 -3.3855 3.3653 38 1 6.4255 -5.8024 2.1898 39 1 0.9366 -5.5566 4.4089 40 1 2.4110 -5.6072 5.5152 41 1 2.2970 -4.3224 7.6436 42 1 1.0525 -3.0729 7.9595 43 1 3.5742 -2.2946 7.4076 44 1 2.2100 -1.4271 6.6320 45 1 3.5171 -2.0942 4.7196 46 1 3.9552 -3.6639 5.4638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421765663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:33 Heat of formation + Delta-G solvation = -36.715767 kcal Electronic energy + Delta-G solvation = -23228.474114 eV Core-core repulsion = 20117.785273 eV Total energy + Delta-G solvation = -3110.688841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.98371 -37.84675 -36.32212 -34.66965 -32.49671 -31.24201 -29.54504 -27.79032 -27.01658 -26.85330 -23.77406 -23.04916 -22.20361 -20.59672 -19.86360 -19.64596 -17.72517 -16.62638 -15.95705 -15.60228 -14.97737 -14.87009 -14.52964 -14.18323 -13.85707 -13.42705 -13.22858 -12.86808 -12.74554 -12.50029 -12.35692 -12.11741 -12.00626 -11.73636 -11.42953 -11.27475 -11.00285 -10.94493 -10.88693 -10.74591 -10.62555 -10.59071 -10.45505 -10.43811 -10.23536 -9.98409 -9.81341 -9.61165 -9.13994 -8.82549 -8.48306 -7.62374 -6.12928 -4.17846 3.24083 3.31491 3.33899 3.41359 3.86699 4.23452 4.37293 4.88948 5.05623 5.12186 5.13893 5.14811 5.20314 5.25868 5.42829 5.60645 5.68820 5.73132 5.77097 5.82856 5.84569 5.90954 5.98421 5.99650 6.03503 6.08750 6.12503 6.14599 6.22670 6.28760 6.34310 6.37619 6.40699 6.49637 6.58742 6.65131 6.67857 6.70003 6.76124 6.86058 7.29936 7.63970 7.82811 8.14936 8.41016 8.86327 9.11540 9.48315 10.94044 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.007341 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.764456 B = 3813.070103 C = 5486.066983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.117 3.883 6 N -0.591 5.591 7 C 0.232 3.768 8 C -0.525 4.525 9 H 0.057 0.943 10 C 0.065 3.935 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.559 3.441 17 O -0.577 6.577 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.151 4.151 21 H 0.109 0.891 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.078 4.078 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 7.198 3.052 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.320 5.320 7 C 0.112 3.888 8 C -0.564 4.564 9 H 0.076 0.924 10 C -0.137 4.137 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.348 3.652 17 O -0.458 6.458 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.169 4.169 21 H 0.127 0.873 22 C -0.129 4.129 23 C -0.162 4.162 24 C -0.115 4.115 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.958 7.378 3.021 9.388 hybrid contribution 0.189 -1.127 -0.477 1.238 sum -4.768 6.252 2.544 8.264 Atomic orbital electron populations 1.21872 0.95374 1.02070 1.01100 1.21051 0.95827 0.95901 0.98520 1.21821 1.00902 0.96200 1.01256 1.22001 1.01033 0.95993 0.97536 1.21369 0.99942 0.90980 0.88329 1.48127 1.19594 1.53042 1.11269 1.19594 0.77505 0.92594 0.99103 1.21444 0.93302 0.93543 1.48092 0.92434 1.24880 0.95111 0.98553 0.95164 1.69921 0.97888 1.36041 1.49374 0.86595 0.77854 0.85103 0.78524 1.20691 1.21133 1.19799 1.19242 0.84466 0.77569 0.83952 1.90564 1.18973 1.51061 1.85206 1.21953 0.98275 0.99728 0.94540 1.22895 1.01824 0.89725 1.00095 1.23392 0.98372 1.04028 0.91144 0.87263 1.21949 0.97308 0.98136 0.95492 1.22701 0.98421 0.98449 0.96587 1.21901 0.95052 0.99962 0.94634 0.92263 0.92813 0.93301 0.91195 0.92767 0.93071 0.92928 0.92137 0.91842 0.90798 0.90843 0.95045 0.93231 0.92712 0.88613 0.88478 0.91421 0.91639 0.91551 0.91740 0.91233 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.52 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.33 16 4 C -0.13 -2.06 5.01 -26.73 -0.13 -2.19 16 5 C 0.12 2.21 5.18 -4.04 -0.02 2.19 16 6 N -0.59 -12.74 2.47 -175.05 -0.43 -13.17 16 7 C 0.23 5.50 4.89 -5.19 -0.03 5.47 16 8 C -0.52 -13.60 9.32 -34.44 -0.32 -13.92 16 9 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 12 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.56 12.21 7.13 -10.98 -0.08 12.14 16 17 O -0.58 -13.61 16.41 5.56 0.09 -13.52 16 18 C -0.14 -2.74 1.78 -154.54 -0.28 -3.02 16 19 C -0.11 -1.98 9.86 -26.73 -0.26 -2.24 16 20 C -0.15 -2.52 6.62 -89.40 -0.59 -3.11 16 21 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 22 C -0.09 -1.26 6.65 -24.97 -0.17 -1.42 16 23 C -0.12 -1.77 6.90 -24.74 -0.17 -1.94 16 24 C -0.08 -1.36 4.51 -25.07 -0.11 -1.48 16 25 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.07 1.42 5.77 -51.93 -0.30 1.12 16 36 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 37 H 0.05 1.19 4.53 -51.92 -0.24 0.96 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.27 7.29 -51.93 -0.38 0.89 16 46 H 0.08 1.46 8.01 -51.93 -0.42 1.05 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -28.40 363.89 -9.38 -37.78 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.39 Total: 3.81 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.85 Total: -12.32 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.30 Total: -36.81 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.40 -9.38 -37.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421765663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.062 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds