Wall clock time and date at job start Tue Mar 31 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47408 * 120.00312 * 2 1 3 5 5 C 1.53006 * 109.47047 * 64.99955 * 4 2 1 6 6 N 1.46501 * 109.47063 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99556 * 269.99781 * 6 5 4 8 8 C 1.50701 * 109.46940 * 263.66168 * 7 6 5 9 9 H 1.07994 * 119.99970 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99811 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99952 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99770 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47259 * 90.00509 * 12 10 8 14 14 H 1.48498 * 109.46983 * 209.99915 * 12 10 8 15 15 H 1.48501 * 109.47374 * 330.00129 * 12 10 8 16 16 C 1.34773 * 120.00062 * 89.99436 * 6 5 4 17 17 O 1.21280 * 120.00049 * 5.59759 * 16 6 5 18 18 C 1.50704 * 120.00015 * 185.59286 * 16 6 5 19 19 C 1.53001 * 119.29761 * 263.42718 * 18 16 6 20 20 C 1.52996 * 60.37848 * 247.75811 * 19 18 16 21 21 H 1.09005 * 119.29969 * 111.30715 * 20 19 18 22 22 C 1.54467 * 118.37480 * 266.37252 * 20 19 18 23 23 C 1.54886 * 104.10138 * 87.57527 * 22 20 19 24 24 C 1.54261 * 117.41024 * 57.77052 * 18 16 6 25 25 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46720 * 299.99734 * 1 2 3 27 27 H 1.08994 * 109.47576 * 59.99662 * 1 2 3 28 28 H 1.09001 * 109.46720 * 240.00266 * 2 1 3 29 29 H 1.09004 * 109.47401 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47417 * 300.00264 * 3 2 1 31 31 H 1.09001 * 109.47007 * 60.00442 * 3 2 1 32 32 H 1.08995 * 109.47124 * 305.00119 * 4 2 1 33 33 H 1.09002 * 109.47158 * 184.99368 * 4 2 1 34 34 H 1.08995 * 109.47024 * 60.00103 * 5 4 2 35 35 H 1.09002 * 109.46663 * 299.99717 * 5 4 2 36 36 H 1.09000 * 109.47376 * 23.66960 * 7 6 5 37 37 H 1.09009 * 109.46542 * 143.66588 * 7 6 5 38 38 H 0.96998 * 119.99818 * 179.97438 * 11 10 8 39 39 H 1.09005 * 117.45954 * 355.35858 * 19 18 16 40 40 H 1.08994 * 117.45787 * 140.18203 * 19 18 16 41 41 H 1.08993 * 110.40216 * 328.98739 * 22 20 19 42 42 H 1.09005 * 110.66207 * 206.28368 * 22 20 19 43 43 H 1.08997 * 110.75598 * 203.89881 * 23 22 20 44 44 H 1.09001 * 110.75940 * 80.70611 * 23 22 20 45 45 H 1.08997 * 110.48960 * 358.90347 * 24 18 16 46 46 H 1.09000 * 110.48512 * 236.25750 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4514 -3.5041 2.3827 8 6 3.3225 -4.9711 2.0625 9 1 2.3487 -5.4000 1.8781 10 6 4.4479 -5.7656 2.0049 11 7 5.6338 -5.2433 2.2300 12 14 4.2882 -7.5837 1.6072 13 1 4.3786 -7.7789 0.1378 14 1 5.3821 -8.3343 2.2743 15 1 2.9770 -8.0835 2.0932 16 6 1.3501 -2.9527 3.4862 17 8 0.2133 -2.5313 3.4558 18 6 1.8982 -3.5511 4.7561 19 6 1.6042 -5.0171 5.0808 20 6 0.9930 -3.9135 5.9465 21 1 -0.0832 -3.7433 5.9126 22 6 1.7459 -3.4809 7.2240 23 6 2.7227 -2.3837 6.7330 24 6 3.1721 -2.9145 5.3490 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6445 1.2950 34 1 2.0699 -2.6550 0.3001 35 1 0.5490 -2.2724 1.1420 36 1 4.0759 -3.0215 1.6309 37 1 3.9084 -3.3855 3.3653 38 1 6.4255 -5.8024 2.1898 39 1 0.9366 -5.5566 4.4089 40 1 2.4110 -5.6072 5.5152 41 1 2.2970 -4.3224 7.6436 42 1 1.0525 -3.0729 7.9595 43 1 3.5742 -2.2946 7.4076 44 1 2.2100 -1.4271 6.6320 45 1 3.5171 -2.0942 4.7196 46 1 3.9552 -3.6639 5.4638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421765663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:32 Heat of formation + Delta-G solvation = -49.280916 kcal Electronic energy + Delta-G solvation = -23229.018980 eV Core-core repulsion = 20117.785273 eV Total energy + Delta-G solvation = -3111.233707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53665 -39.33210 -37.70783 -36.37247 -34.45369 -32.54021 -31.01967 -29.23222 -28.64794 -28.03176 -25.24710 -24.96447 -23.56421 -22.06337 -21.11676 -20.88821 -19.37584 -18.55596 -17.66005 -17.28676 -16.43405 -16.29476 -16.13760 -15.59217 -15.34199 -14.64687 -14.54955 -14.42406 -14.11002 -13.99016 -13.89589 -13.68505 -13.40448 -13.14112 -12.89452 -12.77791 -12.62645 -12.59980 -12.27159 -12.17021 -11.96733 -11.95017 -11.82826 -11.78762 -11.55938 -11.50501 -11.44965 -11.20666 -10.62645 -10.54081 -10.40589 -9.42001 -8.16549 -6.28346 1.39488 1.42198 1.50943 1.70254 2.24263 2.44693 2.78308 3.13988 3.55229 3.75115 3.80210 3.91136 3.94360 3.98883 4.05220 4.30025 4.32605 4.47965 4.52687 4.54929 4.64230 4.70169 4.74842 4.79573 4.80974 4.90778 4.90922 4.93961 4.99586 5.00039 5.05075 5.10193 5.13155 5.18554 5.22192 5.27098 5.32611 5.36113 5.44569 5.47850 5.50460 5.69828 5.89740 6.13222 6.57379 6.85155 7.32746 7.44647 8.89268 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.007341 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.764456 B = 3813.070103 C = 5486.066983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.113 3.887 6 N -0.595 5.595 7 C 0.248 3.752 8 C -0.532 4.532 9 H 0.043 0.957 10 C 0.027 3.973 11 N -0.918 5.918 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.278 1.278 15 H -0.272 1.272 16 C 0.552 3.448 17 O -0.600 6.600 18 C -0.172 4.172 19 C -0.115 4.115 20 C -0.128 4.128 21 H 0.105 0.895 22 C -0.085 4.085 23 C -0.115 4.115 24 C -0.075 4.075 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.014 0.986 37 H 0.047 0.953 38 H 0.266 0.734 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 7.440 3.849 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.153 4.153 5 C -0.009 4.009 6 N -0.324 5.324 7 C 0.127 3.873 8 C -0.571 4.571 9 H 0.061 0.939 10 C -0.173 4.173 11 N -0.557 5.557 12 Si 0.774 3.226 13 H -0.204 1.204 14 H -0.204 1.204 15 H -0.197 1.197 16 C 0.342 3.658 17 O -0.484 6.484 18 C -0.174 4.174 19 C -0.152 4.152 20 C -0.147 4.147 21 H 0.123 0.877 22 C -0.122 4.122 23 C -0.153 4.153 24 C -0.113 4.113 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.026 7.629 3.810 9.898 hybrid contribution 0.184 -1.196 -0.777 1.438 sum -4.843 6.433 3.033 8.604 Atomic orbital electron populations 1.21843 0.94893 1.01408 1.01968 1.21057 0.96202 0.96896 0.96886 1.21785 1.00970 0.94761 1.02251 1.21880 1.00502 0.94209 0.98726 1.21513 0.99474 0.92564 0.87373 1.48177 1.18919 1.53096 1.12194 1.19269 0.78226 0.91598 0.98198 1.21529 0.92728 0.94604 1.48244 0.93862 1.25502 0.94770 1.02124 0.94941 1.70000 0.98410 1.37397 1.49924 0.85706 0.77863 0.80729 0.78304 1.20419 1.20366 1.19721 1.19733 0.84166 0.77204 0.84737 1.90531 1.19849 1.52239 1.85741 1.22106 1.00276 1.00409 0.94648 1.22881 1.02124 0.89483 1.00720 1.23539 0.98172 1.01337 0.91617 0.87658 1.22012 0.97415 0.98479 0.94276 1.22676 0.99443 0.98415 0.94722 1.21859 0.93954 0.99045 0.96436 0.93694 0.93395 0.90947 0.90710 0.92676 0.91069 0.92942 0.93405 0.92462 0.91108 0.91417 0.96804 0.93476 0.92452 0.90173 0.87762 0.89928 0.89042 0.88980 0.91617 0.92824 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.95 71.98 0.64 -2.95 16 2 C -0.09 -2.38 2.92 -10.79 -0.03 -2.41 16 3 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 4 C -0.11 -3.79 5.01 30.60 0.15 -3.63 16 5 C 0.11 4.44 5.18 86.38 0.45 4.89 16 6 N -0.60 -26.55 2.47 -826.13 -2.04 -28.59 16 7 C 0.25 12.11 4.89 85.63 0.42 12.53 16 8 C -0.53 -28.11 9.32 25.60 0.24 -27.87 16 9 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 10 C 0.03 1.41 5.46 84.65 0.46 1.87 16 11 N -0.92 -50.25 13.29 21.45 0.28 -49.96 16 12 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.55 24.74 7.13 87.66 0.62 25.37 16 17 O -0.60 -29.01 16.41 -3.03 -0.05 -29.06 16 18 C -0.17 -6.66 1.78 -52.20 -0.09 -6.75 16 19 C -0.11 -4.20 9.86 30.59 0.30 -3.90 16 20 C -0.13 -4.13 6.62 -10.00 -0.07 -4.19 16 21 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 22 C -0.08 -2.07 6.65 31.74 0.21 -1.86 16 23 C -0.12 -3.01 6.90 31.89 0.22 -2.79 16 24 C -0.08 -2.62 4.51 31.67 0.14 -2.47 16 25 H 0.04 1.23 6.56 -2.39 -0.02 1.22 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 35 H 0.07 2.72 5.77 -2.39 -0.01 2.70 16 36 H 0.01 0.72 8.02 -2.39 -0.02 0.70 16 37 H 0.05 2.34 4.53 -2.38 -0.01 2.33 16 38 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 40 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.99 7.29 -2.39 -0.02 1.97 16 46 H 0.07 2.53 8.01 -2.39 -0.02 2.51 16 Total: -1.00 -60.90 363.89 5.47 -55.43 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.92 Total: 24.57 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.33 Total: -16.56 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.76 Total: -78.56 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -60.90 5.47 -55.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421765663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.147 kcal (2) G-P(sol) polarization free energy of solvation -60.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds