Wall clock time and date at job start Tue Mar 31 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46848 * 119.99554 * 2 1 3 5 5 C 1.52998 * 109.47012 * 65.00068 * 4 2 1 6 6 N 1.46505 * 109.47059 * 184.62151 * 5 4 2 7 7 C 1.46496 * 120.00396 * 265.08489 * 6 5 4 8 8 C 1.50703 * 109.47238 * 275.97553 * 7 6 5 9 9 H 1.07999 * 119.99542 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00165 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99782 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99851 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47164 * 90.00470 * 12 10 8 14 14 H 1.48507 * 109.46887 * 210.00301 * 12 10 8 15 15 H 1.48495 * 109.47536 * 330.00061 * 12 10 8 16 16 C 1.34784 * 119.99365 * 85.08420 * 6 5 4 17 17 O 1.21279 * 119.99970 * 4.86363 * 16 6 5 18 18 C 1.50703 * 119.99403 * 184.86212 * 16 6 5 19 19 C 1.52999 * 119.29859 * 99.37986 * 18 16 6 20 20 C 1.52995 * 60.38235 * 111.29910 * 19 18 16 21 21 H 1.08999 * 119.30312 * 247.75649 * 20 19 18 22 22 C 1.54271 * 118.19570 * 93.61329 * 20 19 18 23 23 C 1.54888 * 104.19372 * 272.21074 * 22 20 19 24 24 C 1.54264 * 117.76159 * 304.18583 * 18 16 6 25 25 H 1.08997 * 109.47186 * 60.00792 * 1 2 3 26 26 H 1.09007 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47720 * 300.00036 * 1 2 3 28 28 H 1.08997 * 109.47462 * 239.99225 * 2 1 3 29 29 H 1.08995 * 109.47330 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46713 * 299.99991 * 3 2 1 31 31 H 1.09003 * 109.47132 * 59.99089 * 3 2 1 32 32 H 1.09005 * 109.47357 * 305.00119 * 4 2 1 33 33 H 1.09000 * 109.46688 * 185.00112 * 4 2 1 34 34 H 1.09000 * 109.46792 * 64.63156 * 5 4 2 35 35 H 1.08991 * 109.47341 * 304.62518 * 5 4 2 36 36 H 1.08995 * 109.47001 * 35.97384 * 7 6 5 37 37 H 1.09002 * 109.47044 * 155.97315 * 7 6 5 38 38 H 0.96999 * 119.99714 * 179.97438 * 11 10 8 39 39 H 1.09007 * 117.45978 * 3.70185 * 19 18 16 40 40 H 1.08998 * 117.44253 * 218.91315 * 19 18 16 41 41 H 1.08990 * 110.48355 * 30.89299 * 22 20 19 42 42 H 1.09002 * 110.48053 * 153.53303 * 22 20 19 43 43 H 1.09000 * 110.75245 * 156.26035 * 23 22 20 44 44 H 1.08998 * 110.76103 * 279.62372 * 23 22 20 45 45 H 1.08995 * 110.48637 * 1.93663 * 24 18 16 46 46 H 1.09009 * 110.48186 * 124.44320 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 7 2.0263 -2.8613 2.4331 7 6 3.3032 -3.5750 2.5122 8 6 3.1345 -4.9688 1.9646 9 1 2.1721 -5.2909 1.5950 10 6 4.2085 -5.8327 1.9354 11 7 5.3802 -5.4406 2.3859 12 14 3.9991 -7.5606 1.2572 13 1 4.2798 -7.5575 -0.2010 14 1 4.9447 -8.4788 1.9414 15 1 2.6065 -8.0193 1.4922 16 6 1.2112 -2.8172 3.5057 17 8 0.1166 -2.3031 3.4147 18 6 1.6603 -3.4069 4.8178 19 6 2.2107 -2.4818 5.9051 20 6 0.8630 -3.1755 6.1135 21 1 -0.0476 -2.5768 6.1342 22 6 0.8450 -4.5220 6.8662 23 6 1.0723 -5.5797 5.7578 24 6 2.0988 -4.8859 4.8284 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6053 -0.2616 2.1371 33 1 3.1262 -0.6442 1.2952 34 1 2.1357 -2.6749 0.3469 35 1 0.5555 -2.2707 1.0595 36 1 4.0535 -3.0432 1.9272 37 1 3.6250 -3.6297 3.5522 38 1 6.1358 -6.0486 2.3657 39 1 2.1989 -1.4100 5.7065 40 1 3.0571 -2.8419 6.4898 41 1 1.6498 -4.5594 7.6002 42 1 -0.1202 -4.6763 7.3487 43 1 1.4884 -6.4956 6.1775 44 1 0.1446 -5.7852 5.2237 45 1 2.0487 -5.3058 3.8239 46 1 3.1071 -4.9819 5.2312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421765664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:41 Heat of formation + Delta-G solvation = -37.576569 kcal Electronic energy + Delta-G solvation = -23264.224680 eV Core-core repulsion = 20153.498512 eV Total energy + Delta-G solvation = -3110.726168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -40.00997 -37.83557 -36.28781 -34.74333 -32.54778 -31.18060 -29.56908 -27.54654 -27.01126 -26.94431 -23.76869 -23.03383 -22.18260 -20.55235 -19.87488 -19.62693 -17.70780 -16.49086 -16.11924 -15.61313 -14.96250 -14.68086 -14.64819 -14.29686 -13.62979 -13.47375 -13.23299 -12.82863 -12.63291 -12.48003 -12.32302 -12.25732 -12.04563 -11.64939 -11.43609 -11.18162 -10.98960 -10.95196 -10.84343 -10.68746 -10.63130 -10.46801 -10.40523 -10.32079 -10.20669 -9.96650 -9.82953 -9.64796 -9.15970 -8.81166 -8.53643 -7.63918 -6.17933 -4.23003 3.21680 3.29203 3.30526 3.36864 3.89306 4.15240 4.34112 4.91460 5.05715 5.10694 5.14533 5.15257 5.16995 5.31865 5.49936 5.59909 5.71747 5.74891 5.82380 5.86545 5.91355 5.93680 6.00826 6.02053 6.05132 6.10094 6.14296 6.17911 6.26270 6.29276 6.36600 6.41494 6.42165 6.57769 6.64577 6.67467 6.72625 6.86341 6.91990 7.25025 7.28178 7.63461 7.76911 8.08254 8.42253 8.80872 9.09800 9.42180 10.88274 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.007384 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.176550 B = 3790.933609 C = 5584.515457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.590 5.590 7 C 0.236 3.764 8 C -0.532 4.532 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.890 3.110 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.556 3.444 17 O -0.574 6.574 18 C -0.145 4.145 19 C -0.133 4.133 20 C -0.143 4.143 21 H 0.110 0.890 22 C -0.093 4.093 23 C -0.125 4.125 24 C -0.093 4.093 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 6.224 2.378 8.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.319 5.319 7 C 0.116 3.884 8 C -0.570 4.570 9 H 0.079 0.921 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.718 3.282 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.344 3.656 17 O -0.456 6.456 18 C -0.148 4.148 19 C -0.170 4.170 20 C -0.161 4.161 21 H 0.128 0.872 22 C -0.130 4.130 23 C -0.163 4.163 24 C -0.130 4.130 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.176 6.404 2.331 8.558 hybrid contribution 0.183 -0.972 -0.461 1.091 sum -4.993 5.432 1.870 7.612 Atomic orbital electron populations 1.21869 0.95339 1.02104 1.01048 1.21042 0.95861 0.95853 0.98518 1.21819 1.00854 0.96245 1.01246 1.21989 1.00870 0.96090 0.97568 1.21346 1.00560 0.91232 0.87260 1.48123 1.21898 1.51445 1.10463 1.19519 0.79018 0.90916 0.98975 1.21418 0.96301 0.97479 1.41851 0.92135 1.24894 0.94997 0.98562 0.95084 1.69925 1.00645 1.36305 1.45679 0.86607 0.78229 0.84173 0.79195 1.20576 1.21042 1.19696 1.19318 0.83728 0.78106 0.84466 1.90568 1.21727 1.48077 1.85206 1.22196 1.06201 0.97714 0.88715 1.23030 0.96675 0.97594 0.99735 1.23252 0.95848 0.98951 0.98096 0.87168 1.21962 1.01084 0.92720 0.97282 1.22716 0.99670 0.97584 0.96287 1.22299 0.97630 0.89609 1.03478 0.93365 0.92222 0.92805 0.91218 0.92803 0.93078 0.92953 0.92128 0.91963 0.90439 0.91101 0.95242 0.93336 0.92567 0.88865 0.88521 0.91631 0.91819 0.91698 0.91829 0.86797 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.95 37.16 0.33 -1.60 16 2 C -0.09 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 4 C -0.13 -2.07 4.97 -26.73 -0.13 -2.20 16 5 C 0.12 2.26 5.27 -4.04 -0.02 2.24 16 6 N -0.59 -12.65 2.47 -175.06 -0.43 -13.09 16 7 C 0.24 5.54 4.64 -5.19 -0.02 5.51 16 8 C -0.53 -13.42 6.76 -34.44 -0.23 -13.65 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 12 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.56 12.04 7.22 -10.98 -0.08 11.97 16 17 O -0.57 -13.44 16.44 5.56 0.09 -13.35 16 18 C -0.15 -2.79 1.54 -154.54 -0.24 -3.03 16 19 C -0.13 -2.18 9.85 -26.73 -0.26 -2.44 16 20 C -0.14 -2.35 6.56 -89.50 -0.59 -2.94 16 21 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 22 C -0.09 -1.34 6.63 -25.07 -0.17 -1.51 16 23 C -0.13 -2.02 6.91 -24.74 -0.17 -2.19 16 24 C -0.09 -1.80 4.67 -25.08 -0.12 -1.92 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.84 6.47 -51.93 -0.34 0.51 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 35 H 0.07 1.37 5.73 -51.93 -0.30 1.07 16 36 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.05 1.18 5.63 -51.93 -0.29 0.89 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.11 2.55 4.90 -51.93 -0.25 2.30 16 46 H 0.07 1.41 8.03 -51.92 -0.42 0.99 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -27.48 359.76 -9.25 -36.72 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.32 Total: 5.20 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.72 Total: -13.00 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.30 Total: -36.14 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.48 -9.25 -36.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421765664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.852 kcal (2) G-P(sol) polarization free energy of solvation -27.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds