Wall clock time and date at job start Tue Mar 31 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46848 * 119.99554 * 2 1 3 5 5 C 1.52998 * 109.47012 * 65.00068 * 4 2 1 6 6 N 1.46505 * 109.47059 * 184.62151 * 5 4 2 7 7 C 1.46496 * 120.00396 * 265.08489 * 6 5 4 8 8 C 1.50703 * 109.47238 * 275.97553 * 7 6 5 9 9 H 1.07999 * 119.99542 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00165 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99782 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99851 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47164 * 90.00470 * 12 10 8 14 14 H 1.48507 * 109.46887 * 210.00301 * 12 10 8 15 15 H 1.48495 * 109.47536 * 330.00061 * 12 10 8 16 16 C 1.34784 * 119.99365 * 85.08420 * 6 5 4 17 17 O 1.21279 * 119.99970 * 4.86363 * 16 6 5 18 18 C 1.50703 * 119.99403 * 184.86212 * 16 6 5 19 19 C 1.52999 * 119.29859 * 99.37986 * 18 16 6 20 20 C 1.52995 * 60.38235 * 111.29910 * 19 18 16 21 21 H 1.08999 * 119.30312 * 247.75649 * 20 19 18 22 22 C 1.54271 * 118.19570 * 93.61329 * 20 19 18 23 23 C 1.54888 * 104.19372 * 272.21074 * 22 20 19 24 24 C 1.54264 * 117.76159 * 304.18583 * 18 16 6 25 25 H 1.08997 * 109.47186 * 60.00792 * 1 2 3 26 26 H 1.09007 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47720 * 300.00036 * 1 2 3 28 28 H 1.08997 * 109.47462 * 239.99225 * 2 1 3 29 29 H 1.08995 * 109.47330 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46713 * 299.99991 * 3 2 1 31 31 H 1.09003 * 109.47132 * 59.99089 * 3 2 1 32 32 H 1.09005 * 109.47357 * 305.00119 * 4 2 1 33 33 H 1.09000 * 109.46688 * 185.00112 * 4 2 1 34 34 H 1.09000 * 109.46792 * 64.63156 * 5 4 2 35 35 H 1.08991 * 109.47341 * 304.62518 * 5 4 2 36 36 H 1.08995 * 109.47001 * 35.97384 * 7 6 5 37 37 H 1.09002 * 109.47044 * 155.97315 * 7 6 5 38 38 H 0.96999 * 119.99714 * 179.97438 * 11 10 8 39 39 H 1.09007 * 117.45978 * 3.70185 * 19 18 16 40 40 H 1.08998 * 117.44253 * 218.91315 * 19 18 16 41 41 H 1.08990 * 110.48355 * 30.89299 * 22 20 19 42 42 H 1.09002 * 110.48053 * 153.53303 * 22 20 19 43 43 H 1.09000 * 110.75245 * 156.26035 * 23 22 20 44 44 H 1.08998 * 110.76103 * 279.62372 * 23 22 20 45 45 H 1.08995 * 110.48637 * 1.93663 * 24 18 16 46 46 H 1.09009 * 110.48186 * 124.44320 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 7 2.0263 -2.8613 2.4331 7 6 3.3032 -3.5750 2.5122 8 6 3.1345 -4.9688 1.9646 9 1 2.1721 -5.2909 1.5950 10 6 4.2085 -5.8327 1.9354 11 7 5.3802 -5.4406 2.3859 12 14 3.9991 -7.5606 1.2572 13 1 4.2798 -7.5575 -0.2010 14 1 4.9447 -8.4788 1.9414 15 1 2.6065 -8.0193 1.4922 16 6 1.2112 -2.8172 3.5057 17 8 0.1166 -2.3031 3.4147 18 6 1.6603 -3.4069 4.8178 19 6 2.2107 -2.4818 5.9051 20 6 0.8630 -3.1755 6.1135 21 1 -0.0476 -2.5768 6.1342 22 6 0.8450 -4.5220 6.8662 23 6 1.0723 -5.5797 5.7578 24 6 2.0988 -4.8859 4.8284 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6053 -0.2616 2.1371 33 1 3.1262 -0.6442 1.2952 34 1 2.1357 -2.6749 0.3469 35 1 0.5555 -2.2707 1.0595 36 1 4.0535 -3.0432 1.9272 37 1 3.6250 -3.6297 3.5522 38 1 6.1358 -6.0486 2.3657 39 1 2.1989 -1.4100 5.7065 40 1 3.0571 -2.8419 6.4898 41 1 1.6498 -4.5594 7.6002 42 1 -0.1202 -4.6763 7.3487 43 1 1.4884 -6.4956 6.1775 44 1 0.1446 -5.7852 5.2237 45 1 2.0487 -5.3058 3.8239 46 1 3.1071 -4.9819 5.2312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421765664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:39 Heat of formation + Delta-G solvation = -49.528211 kcal Electronic energy + Delta-G solvation = -23264.742942 eV Core-core repulsion = 20153.498512 eV Total energy + Delta-G solvation = -3111.244430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55791 -39.32163 -37.68294 -36.43562 -34.46221 -32.51577 -31.06288 -28.98794 -28.76850 -28.03487 -25.20293 -24.94070 -23.56252 -22.05343 -21.12991 -20.87561 -19.37918 -18.44027 -17.71537 -17.28822 -16.43468 -16.25120 -16.11653 -15.77008 -15.07344 -14.72967 -14.57986 -14.26455 -14.24148 -13.98678 -13.82863 -13.72197 -13.34877 -13.13720 -12.86207 -12.75413 -12.62502 -12.56364 -12.24976 -12.15397 -11.96530 -11.91985 -11.80377 -11.65320 -11.55021 -11.54598 -11.42658 -11.21882 -10.59945 -10.54965 -10.40925 -9.42113 -8.17397 -6.28218 1.40037 1.43129 1.51407 1.68732 2.27538 2.43809 2.73581 3.12117 3.57259 3.72220 3.80173 3.92974 3.96014 4.05223 4.07720 4.31132 4.33807 4.51323 4.54767 4.58638 4.66728 4.69804 4.75107 4.80322 4.80946 4.87970 4.91430 4.95940 4.99825 5.03034 5.07719 5.11990 5.14475 5.24546 5.26092 5.31934 5.35427 5.45004 5.48151 5.52780 5.61632 5.71004 5.89699 6.09866 6.59962 6.83940 7.32173 7.43946 8.88159 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.007384 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.176550 B = 3790.933609 C = 5584.515457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.116 3.884 6 N -0.595 5.595 7 C 0.255 3.745 8 C -0.533 4.533 9 H 0.047 0.953 10 C 0.030 3.970 11 N -0.914 5.914 12 Si 0.946 3.054 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.272 1.272 16 C 0.549 3.451 17 O -0.597 6.597 18 C -0.181 4.181 19 C -0.120 4.120 20 C -0.127 4.127 21 H 0.108 0.892 22 C -0.084 4.084 23 C -0.122 4.122 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.041 0.959 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 6.276 3.030 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.007 4.007 6 N -0.324 5.324 7 C 0.134 3.866 8 C -0.572 4.572 9 H 0.065 0.935 10 C -0.171 4.171 11 N -0.553 5.553 12 Si 0.772 3.228 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.197 1.197 16 C 0.339 3.661 17 O -0.481 6.481 18 C -0.183 4.183 19 C -0.157 4.157 20 C -0.146 4.146 21 H 0.126 0.874 22 C -0.121 4.121 23 C -0.159 4.159 24 C -0.126 4.126 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.527 6.462 2.975 9.009 hybrid contribution 0.266 -0.964 -0.695 1.218 sum -5.261 5.498 2.281 7.944 Atomic orbital electron populations 1.21835 0.94988 1.01359 1.01843 1.21052 0.96123 0.96896 0.96955 1.21782 1.00990 0.94767 1.02200 1.21870 1.00410 0.94343 0.98666 1.21474 1.00120 0.92776 0.86285 1.48177 1.21275 1.51455 1.11443 1.19144 0.79406 0.90183 0.97866 1.21458 0.95712 0.98311 1.41671 0.93481 1.25484 0.94678 1.01607 0.95287 1.70002 1.01213 1.37477 1.46618 0.85736 0.78078 0.80403 0.78601 1.20277 1.20413 1.19692 1.19798 0.83334 0.77692 0.85310 1.90536 1.22506 1.49303 1.85733 1.22232 1.09418 0.98159 0.88533 1.23134 0.97418 0.97363 0.97769 1.23403 0.95629 0.99755 0.95801 0.87411 1.21975 1.03198 0.90263 0.96685 1.22696 0.98320 0.98676 0.96224 1.22113 0.98187 0.90124 1.02155 0.90958 0.93732 0.93578 0.90609 0.92601 0.91061 0.93064 0.93566 0.92449 0.90896 0.91653 0.97139 0.94115 0.92371 0.88584 0.86846 0.89663 0.89490 0.89928 0.92575 0.90359 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.95 71.98 0.64 -3.03 16 2 C -0.09 -2.40 2.92 -10.79 -0.03 -2.43 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C -0.11 -3.81 4.97 30.60 0.15 -3.66 16 5 C 0.12 4.56 5.27 86.38 0.46 5.01 16 6 N -0.60 -26.40 2.47 -826.16 -2.04 -28.43 16 7 C 0.25 12.38 4.64 85.63 0.40 12.78 16 8 C -0.53 -27.57 6.76 25.60 0.17 -27.39 16 9 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 10 C 0.03 1.57 5.46 84.65 0.46 2.03 16 11 N -0.91 -49.44 13.29 21.45 0.28 -49.15 16 12 Si 0.95 41.49 29.54 68.60 2.03 43.51 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 C 0.55 24.35 7.22 87.66 0.63 24.98 16 17 O -0.60 -28.52 16.44 -3.03 -0.05 -28.57 16 18 C -0.18 -6.92 1.54 -52.20 -0.08 -7.00 16 19 C -0.12 -3.77 9.85 30.59 0.30 -3.47 16 20 C -0.13 -3.98 6.56 -10.07 -0.07 -4.04 16 21 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 22 C -0.08 -2.17 6.63 31.67 0.21 -1.96 16 23 C -0.12 -3.75 6.91 31.88 0.22 -3.53 16 24 C -0.09 -3.43 4.67 31.67 0.15 -3.28 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.26 6.47 -2.38 -0.02 1.25 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 35 H 0.07 2.62 5.73 -2.39 -0.01 2.61 16 36 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 37 H 0.04 2.05 5.63 -2.39 -0.01 2.03 16 38 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 3.60 4.90 -2.39 -0.01 3.59 16 46 H 0.06 2.45 8.03 -2.38 -0.02 2.43 16 Total: -1.00 -59.35 359.76 5.43 -53.92 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.92 Total: 26.12 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.28 Total: -17.39 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.75 Total: -77.59 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.57 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -59.35 5.43 -53.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421765664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.391 kcal (2) G-P(sol) polarization free energy of solvation -59.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds