Wall clock time and date at job start Tue Mar 31 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 C 1.50701 * 109.46797 * 301.57695 * 3 2 1 5 5 O 1.21280 * 120.00134 * 249.72530 * 4 3 2 6 6 N 1.34778 * 119.99911 * 69.73363 * 4 3 2 7 7 C 1.46497 * 120.00303 * 175.58208 * 6 4 3 8 8 C 1.53002 * 109.47307 * 184.92895 * 7 6 4 9 9 C 1.50698 * 115.55033 * 81.61168 * 8 7 6 10 10 H 1.07999 * 119.99846 * 219.72298 * 9 8 7 11 11 C 1.37879 * 120.00181 * 39.71837 * 9 8 7 12 12 N 1.31519 * 119.99871 * 16.98438 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 196.97641 * 11 9 8 14 14 H 1.48499 * 109.46852 * 5.01416 * 13 11 9 15 15 H 1.48504 * 109.46735 * 125.01066 * 13 11 9 16 16 H 1.48494 * 109.47426 * 245.00837 * 13 11 9 17 17 C 1.52998 * 117.49736 * 295.93772 * 8 7 6 18 18 C 1.52996 * 60.03358 * 252.50244 * 17 8 7 19 19 C 1.52998 * 109.47711 * 61.58121 * 3 2 1 20 20 C 1.53001 * 109.47183 * 179.97438 * 19 3 2 21 21 C 1.52999 * 109.47063 * 299.99844 * 20 19 3 22 22 C 1.52998 * 109.46994 * 60.00040 * 21 20 19 23 23 C 1.53000 * 109.47711 * 299.99867 * 22 21 20 24 24 H 1.08996 * 109.46958 * 186.72306 * 1 2 3 25 25 H 1.09003 * 109.47156 * 306.72149 * 1 2 3 26 26 H 1.09004 * 109.46904 * 66.72435 * 1 2 3 27 27 H 1.08998 * 109.47013 * 239.99390 * 2 1 3 28 28 H 1.08993 * 109.46829 * 119.99658 * 2 1 3 29 29 H 0.97001 * 119.99632 * 355.57488 * 6 4 3 30 30 H 1.09007 * 109.47191 * 64.92174 * 7 6 4 31 31 H 1.09003 * 109.47122 * 304.93224 * 7 6 4 32 32 H 0.96994 * 119.99997 * 184.98318 * 12 11 9 33 33 H 1.08999 * 117.49989 * 0.02562 * 17 8 7 34 34 H 1.08996 * 117.49737 * 144.99446 * 17 8 7 35 35 H 1.08996 * 117.50318 * 107.50269 * 18 17 8 36 36 H 1.09003 * 117.49589 * 252.52344 * 18 17 8 37 37 H 1.09001 * 109.46809 * 300.00169 * 19 3 2 38 38 H 1.09003 * 109.46606 * 59.99493 * 19 3 2 39 39 H 1.08999 * 109.46571 * 180.02562 * 20 19 3 40 40 H 1.08996 * 109.47118 * 60.00088 * 20 19 3 41 41 H 1.09003 * 109.47139 * 300.00740 * 21 20 19 42 42 H 1.09001 * 109.47384 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47261 * 179.97438 * 22 21 20 44 44 H 1.09003 * 109.47118 * 60.00252 * 22 21 20 45 45 H 1.09003 * 109.47144 * 300.00370 * 23 22 21 46 46 H 1.08995 * 109.47574 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5059 2.1640 -1.2105 5 8 2.2566 2.4770 -2.1101 6 7 0.1940 2.4617 -1.2932 7 6 -0.3092 3.2472 -2.4227 8 6 -1.7950 3.5466 -2.2141 9 6 -2.1026 4.7098 -1.3067 10 1 -2.9253 4.6482 -0.6098 11 6 -1.3336 5.8527 -1.3661 12 7 -0.5639 6.0738 -2.4094 13 14 -1.3851 7.0870 0.0349 14 1 -2.2273 6.5523 1.1349 15 1 -0.0076 7.3241 0.5366 16 1 -1.9611 8.3658 -0.4528 17 6 -2.7586 2.3584 -2.1909 18 6 -2.7381 3.3022 -3.3948 19 6 1.5628 2.1523 1.2686 20 6 2.0733 3.5946 1.2688 21 6 3.6028 3.5942 1.2293 22 6 4.0800 2.8845 -0.0393 23 6 3.5695 1.4421 -0.0396 24 1 -0.3633 -1.0206 0.1203 25 1 -0.3633 0.6145 0.8237 26 1 -0.3633 0.4061 -0.9441 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 -0.4170 2.1556 -0.6048 30 1 -0.1784 2.6818 -3.3455 31 1 0.2444 4.1839 -2.4892 32 1 0.0309 6.8399 -2.4196 33 1 -2.3339 1.3633 -2.3237 34 1 -3.6149 2.4179 -1.5191 35 1 -2.3000 2.9282 -4.3202 36 1 -3.5809 3.9830 -3.5150 37 1 0.4731 2.1521 1.2970 38 1 1.9491 1.6303 2.1441 39 1 1.7336 4.1000 2.1728 40 1 1.6873 4.1167 0.3933 41 1 3.9887 3.0720 2.1048 42 1 3.9665 4.6218 1.2299 43 1 5.1697 2.8846 -0.0677 44 1 3.6941 3.4067 -0.9148 45 1 3.9555 0.9200 0.8359 46 1 3.9091 0.9367 -0.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431150002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:07 Heat of formation + Delta-G solvation = -39.114732 kcal Electronic energy + Delta-G solvation = -24154.457434 eV Core-core repulsion = 21043.664566 eV Total energy + Delta-G solvation = -3110.792868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47866 -37.30899 -36.29294 -34.31686 -32.77387 -32.24314 -30.39583 -28.98299 -26.28694 -25.29981 -24.00325 -22.28942 -21.61333 -21.18989 -20.22489 -19.28576 -18.58540 -16.54747 -15.79285 -15.54649 -14.84097 -14.80510 -14.48179 -14.05750 -13.89050 -13.58480 -13.32857 -13.25058 -12.97341 -12.59636 -12.43667 -11.88453 -11.85388 -11.66867 -11.48331 -11.34463 -11.05404 -10.94617 -10.86786 -10.81913 -10.71061 -10.50233 -10.35726 -10.23165 -9.83534 -9.73098 -9.53564 -9.26617 -8.86393 -8.76236 -8.19205 -7.85422 -6.15502 -4.15827 3.22405 3.33046 3.35295 3.38997 4.01365 4.33539 4.75550 4.83521 4.91449 4.99825 5.22982 5.32949 5.36687 5.46458 5.50920 5.56766 5.62827 5.75376 5.77577 5.79335 5.90250 5.98146 6.00445 6.05223 6.14377 6.18518 6.26800 6.29804 6.36285 6.43209 6.50911 6.53961 6.57170 6.59248 6.59733 6.67092 6.81891 6.93849 7.06010 7.27338 7.50893 7.60415 7.91260 8.31716 8.45456 8.80454 9.07855 9.44170 10.88698 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.007875 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.634649 B = 3554.478007 C = 4475.248357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 C -0.078 4.078 4 C 0.519 3.481 5 O -0.553 6.553 6 N -0.707 5.707 7 C 0.143 3.857 8 C 0.041 3.959 9 C -0.493 4.493 10 H 0.062 0.938 11 C 0.075 3.925 12 N -0.864 5.864 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.284 1.284 17 C -0.211 4.211 18 C -0.192 4.192 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.088 4.088 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.396 0.604 30 H 0.029 0.971 31 H 0.116 0.884 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -9.532 7.550 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.146 4.146 3 C -0.082 4.082 4 C 0.305 3.695 5 O -0.432 6.432 6 N -0.358 5.358 7 C 0.021 3.979 8 C 0.040 3.960 9 C -0.529 4.529 10 H 0.080 0.920 11 C -0.129 4.129 12 N -0.500 5.500 13 Si 0.707 3.293 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.210 1.210 17 C -0.249 4.249 18 C -0.230 4.230 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.167 4.167 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.048 0.952 31 H 0.134 0.866 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.739 -9.097 6.789 12.719 hybrid contribution -0.415 0.542 0.976 1.191 sum 5.324 -8.555 7.765 12.721 Atomic orbital electron populations 1.22222 0.95624 1.02091 1.03352 1.21497 0.96310 0.94454 1.02327 1.20918 0.97046 0.95647 0.94562 1.20194 0.82485 0.79427 0.87417 1.90599 1.57275 1.54832 1.40463 1.46434 1.07836 1.54088 1.27406 1.21226 0.95484 0.96131 0.85084 1.19165 0.87479 0.93094 0.96236 1.20508 1.15785 0.97148 1.19493 0.92024 1.24903 0.95908 0.97126 0.94934 1.69964 1.25053 1.28663 1.26331 0.86733 0.78050 0.81395 0.83122 1.19572 1.20647 1.21000 1.22878 1.04235 0.94461 1.03282 1.22940 1.04988 1.02917 0.92183 1.21641 1.00965 0.95851 0.95896 1.21594 0.95661 0.96465 1.02738 1.21521 0.95837 1.00122 0.97876 1.21691 0.99585 0.96072 0.99347 1.21299 0.92374 0.97500 1.01418 0.92500 0.91822 0.91072 0.91676 0.91264 0.76769 0.95238 0.86627 0.92671 0.91403 0.90526 0.91590 0.90178 0.91091 0.91488 0.92034 0.90927 0.92667 0.92457 0.92710 0.89534 0.92141 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.27 37.16 0.31 -1.84 16 2 C -0.11 -1.33 4.98 -26.73 -0.13 -1.47 16 3 C -0.08 -1.15 0.50 -155.66 -0.08 -1.23 16 4 C 0.52 9.96 4.57 -10.98 -0.05 9.91 16 5 O -0.55 -12.56 14.09 5.56 0.08 -12.48 16 6 N -0.71 -13.97 4.11 -60.29 -0.25 -14.22 16 7 C 0.14 3.35 5.37 -4.04 -0.02 3.33 16 8 C 0.04 0.96 1.72 -155.62 -0.27 0.70 16 9 C -0.49 -12.69 8.98 -34.44 -0.31 -12.99 16 10 H 0.06 1.59 7.87 -52.49 -0.41 1.17 16 11 C 0.08 1.97 5.11 -17.82 -0.09 1.88 16 12 N -0.86 -23.71 11.11 55.43 0.62 -23.10 16 13 Si 0.88 20.32 29.57 -169.99 -5.03 15.29 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C -0.21 -4.28 9.77 -26.73 -0.26 -4.54 16 18 C -0.19 -4.25 9.89 -26.69 -0.26 -4.51 16 19 C -0.11 -1.46 4.24 -26.73 -0.11 -1.57 16 20 C -0.13 -1.98 5.70 -26.73 -0.15 -2.13 16 21 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 22 C -0.13 -1.97 5.63 -26.73 -0.15 -2.12 16 23 C -0.09 -1.24 4.35 -26.73 -0.12 -1.36 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.75 5.89 -51.93 -0.31 0.44 16 26 H 0.07 1.02 5.85 -51.93 -0.30 0.71 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.40 7.16 4.84 -40.82 -0.20 6.96 16 30 H 0.03 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.12 3.13 5.48 -51.93 -0.28 2.85 16 32 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.07 0.98 5.42 -51.93 -0.28 0.70 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.41 7.22 -51.93 -0.37 1.03 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.63 5.88 -51.93 -0.31 1.33 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.99 7.99 -51.93 -0.42 0.57 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -28.06 343.69 -9.18 -37.25 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -7.92 Total: 11.82 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.86 Total: -19.74 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.37 Total: -37.32 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.06 -9.18 -37.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431150002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.868 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds