Wall clock time and date at job start Tue Mar 31 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 C 1.53002 * 109.47204 * 240.00099 * 2 1 3 5 5 C 1.52998 * 109.46922 * 295.90524 * 4 2 1 6 6 C 1.50709 * 112.84607 * 296.36484 * 5 4 2 7 7 O 1.21273 * 119.99953 * 114.04562 * 6 5 4 8 8 N 1.34773 * 120.00082 * 294.04136 * 6 5 4 9 9 C 1.46496 * 120.00213 * 185.01016 * 8 6 5 10 10 C 1.53001 * 109.47047 * 184.88096 * 9 8 6 11 11 C 1.50700 * 115.55346 * 280.80771 * 10 9 8 12 12 H 1.07992 * 120.00078 * 144.43544 * 11 10 9 13 13 C 1.37882 * 119.99841 * 324.43529 * 11 10 9 14 14 N 1.31513 * 120.00058 * 343.14218 * 13 11 10 15 15 Si 1.86800 * 119.99661 * 163.14344 * 13 11 10 16 16 H 1.48496 * 109.47405 * 60.00002 * 15 13 11 17 17 H 1.48499 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47198 * 299.99939 * 15 13 11 19 19 C 1.53009 * 117.49589 * 135.10486 * 10 9 8 20 20 C 1.52998 * 117.49834 * 66.48321 * 10 9 8 21 21 C 1.53784 * 113.61530 * 165.06258 * 5 4 2 22 22 C 1.53785 * 87.07868 * 220.01608 * 21 5 4 23 23 C 1.53777 * 87.08318 * 25.43028 * 22 21 5 24 24 H 1.08995 * 109.46924 * 198.34206 * 1 2 3 25 25 H 1.09005 * 109.46812 * 318.33795 * 1 2 3 26 26 H 1.09001 * 109.46955 * 78.33799 * 1 2 3 27 27 H 1.08998 * 109.47242 * 119.99489 * 2 1 3 28 28 H 1.09001 * 109.47196 * 299.99932 * 3 2 1 29 29 H 1.09005 * 109.47494 * 59.99774 * 3 2 1 30 30 H 1.09001 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47171 * 55.90116 * 4 2 1 32 32 H 1.09001 * 109.47190 * 175.90150 * 4 2 1 33 33 H 0.97010 * 119.99922 * 5.01644 * 8 6 5 34 34 H 1.09000 * 109.47261 * 304.88723 * 9 8 6 35 35 H 1.09007 * 109.46912 * 64.88491 * 9 8 6 36 36 H 0.96995 * 119.99449 * 185.01201 * 14 13 11 37 37 H 1.08993 * 117.49695 * 359.97438 * 19 10 9 38 38 H 1.08993 * 117.49534 * 145.01915 * 19 10 9 39 39 H 1.09000 * 117.49724 * 214.97715 * 20 10 9 40 40 H 1.09001 * 117.49626 * 359.97427 * 20 10 9 41 41 H 1.09000 * 113.60606 * 334.55871 * 21 5 4 42 42 H 1.08999 * 113.61651 * 105.46569 * 21 5 4 43 43 H 1.09000 * 113.61117 * 270.88375 * 22 21 5 44 44 H 1.08997 * 113.61507 * 139.97501 * 22 21 5 45 45 H 1.09002 * 113.61592 * 220.02435 * 23 22 21 46 46 H 1.08998 * 113.61661 * 89.11710 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6159 -2.1904 -1.1988 6 6 2.2305 -2.9375 -0.0432 7 8 1.5262 -3.3594 0.8494 8 7 3.5628 -3.1369 -0.0018 9 6 4.1481 -3.9561 1.0623 10 6 5.6737 -3.9227 0.9509 11 6 6.2685 -4.8224 -0.1016 12 1 7.1435 -4.5067 -0.6502 13 6 5.6955 -6.0488 -0.3642 14 7 4.8576 -6.5812 0.4983 15 14 6.1096 -6.9538 -1.9449 16 1 7.5693 -7.2220 -1.9941 17 1 5.3679 -8.2396 -1.9880 18 1 5.7201 -6.1191 -3.1098 19 6 6.4719 -3.7195 2.2404 20 6 6.3723 -2.5875 1.2158 21 6 1.7519 -2.9175 -2.5471 22 6 0.4194 -3.6112 -2.2179 23 6 0.0978 -2.3982 -1.3291 24 1 -0.3633 -0.9754 0.3234 25 1 -0.3633 0.7678 0.6832 26 1 -0.3633 0.2077 -1.0065 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6180 -0.2516 -2.1377 32 1 3.1276 -0.6581 -1.2867 33 1 4.1341 -2.7378 -0.6766 34 1 3.8458 -3.5617 2.0324 35 1 3.7990 -4.9840 0.9631 36 1 4.5109 -7.4748 0.3493 37 1 5.9101 -3.6093 3.1678 38 1 7.4273 -4.2368 2.3276 39 1 7.2623 -2.3601 0.6290 40 1 5.7449 -1.7329 1.4690 41 1 1.6967 -2.2526 -3.4090 42 1 2.6004 -3.6003 -2.5913 43 1 0.5370 -4.5411 -1.6616 44 1 -0.2444 -3.7114 -3.0766 45 1 -0.3890 -2.6617 -0.3901 46 1 -0.4095 -1.5914 -1.8582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431173676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:41 Heat of formation + Delta-G solvation = -13.462488 kcal Electronic energy + Delta-G solvation = -23458.551598 eV Core-core repulsion = 20348.871095 eV Total energy + Delta-G solvation = -3109.680503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -40.48934 -37.56392 -36.39104 -35.35043 -33.06231 -32.28073 -28.89478 -27.48366 -26.22090 -25.36380 -25.02161 -23.36023 -21.47084 -21.02754 -19.67196 -19.29505 -18.36985 -16.56403 -15.92303 -15.63248 -15.15274 -14.78636 -14.56213 -14.30995 -13.92018 -13.73900 -13.46366 -13.05386 -12.64933 -12.54191 -12.21785 -12.09686 -11.83920 -11.73730 -11.66532 -11.46266 -11.27017 -10.98679 -10.82408 -10.77265 -10.61903 -10.51957 -10.36639 -10.32479 -9.98210 -9.70056 -9.58869 -9.22424 -8.96429 -8.83837 -8.26388 -7.85716 -6.12318 -4.16800 3.21892 3.29765 3.30979 3.35352 3.97016 4.28846 4.58581 4.75959 4.87851 4.92963 5.01488 5.04218 5.13659 5.32252 5.46361 5.55284 5.60348 5.64836 5.77767 5.82146 5.84497 5.91017 5.94986 5.99767 6.04711 6.06290 6.13332 6.21940 6.31372 6.32170 6.41816 6.46611 6.50398 6.53616 6.61446 6.62434 6.70135 6.93254 7.06714 7.27573 7.51109 7.58661 7.99943 8.33534 8.45974 8.78845 9.06920 9.41906 10.86699 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.006185 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.828330 B = 4526.171827 C = 5395.562916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.104 4.104 6 C 0.531 3.469 7 O -0.555 6.555 8 N -0.701 5.701 9 C 0.140 3.860 10 C 0.040 3.960 11 C -0.496 4.496 12 H 0.062 0.938 13 C 0.075 3.925 14 N -0.869 5.869 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.195 4.195 20 C -0.210 4.210 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.031 0.969 35 H 0.125 0.875 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 11.190 -5.344 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.107 4.107 6 C 0.316 3.684 7 O -0.434 6.434 8 N -0.348 5.348 9 C 0.018 3.982 10 C 0.039 3.961 11 C -0.533 4.533 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.505 5.505 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.233 4.233 20 C -0.247 4.247 21 C -0.166 4.166 22 C -0.183 4.183 23 C -0.153 4.153 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.049 0.951 35 H 0.142 0.858 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.761 10.695 -4.693 14.023 hybrid contribution 0.748 -0.293 -1.016 1.295 sum -7.014 10.402 -5.708 13.783 Atomic orbital electron populations 1.22112 0.95291 1.02378 1.01050 1.21082 0.96178 0.95728 0.98603 1.21846 1.00970 0.96117 1.01300 1.21566 1.00996 0.92417 0.98008 1.21996 0.98008 0.95620 0.95089 1.19676 0.82634 0.79814 0.86320 1.90620 1.61536 1.52224 1.39067 1.45987 1.06334 1.51435 1.31056 1.21423 0.92335 0.97892 0.86589 1.19169 0.89775 0.92529 0.94580 1.20459 1.12793 1.01326 1.18742 0.91987 1.24967 0.94551 0.97105 0.96318 1.69725 1.31529 1.15047 1.34196 0.86679 0.78534 0.78890 0.84128 1.20184 1.21158 1.19980 1.22944 1.03070 1.03246 0.94064 1.22865 1.03328 0.92782 1.05746 1.22982 0.98992 0.99269 0.95380 1.22873 0.97133 0.98518 0.99726 1.23004 0.94096 0.97597 1.00606 0.91311 0.93474 0.92913 0.91099 0.92957 0.92939 0.92756 0.91262 0.91505 0.77173 0.95076 0.85810 0.92368 0.91592 0.90202 0.90605 0.91413 0.89643 0.90661 0.90010 0.91655 0.89958 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.80 37.16 0.29 -1.47 16 2 C -0.10 -1.23 2.82 -90.62 -0.26 -1.49 16 3 C -0.14 -1.55 9.11 37.16 0.34 -1.21 16 4 C -0.09 -1.15 4.21 -26.73 -0.11 -1.26 16 5 C -0.10 -1.53 0.78 -154.84 -0.12 -1.65 16 6 C 0.53 10.35 5.52 -10.98 -0.06 10.29 16 7 O -0.56 -12.81 15.93 5.56 0.09 -12.72 16 8 N -0.70 -14.28 5.52 -60.29 -0.33 -14.61 16 9 C 0.14 3.32 5.34 -4.04 -0.02 3.30 16 10 C 0.04 0.96 1.74 -155.66 -0.27 0.68 16 11 C -0.50 -12.77 9.01 -34.44 -0.31 -13.08 16 12 H 0.06 1.59 7.87 -52.49 -0.41 1.17 16 13 C 0.07 1.94 5.15 -17.82 -0.09 1.85 16 14 N -0.87 -23.70 10.82 55.43 0.60 -23.10 16 15 Si 0.89 20.21 29.57 -169.99 -5.03 15.18 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.19 -4.35 9.88 -26.72 -0.26 -4.62 16 20 C -0.21 -4.34 9.93 -26.73 -0.27 -4.61 16 21 C -0.13 -1.77 7.22 -25.91 -0.19 -1.96 16 22 C -0.15 -2.02 7.80 -25.92 -0.20 -2.22 16 23 C -0.12 -1.57 4.70 -25.92 -0.12 -1.69 16 24 H 0.07 0.90 5.64 -51.93 -0.29 0.61 16 25 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 26 H 0.05 0.53 6.98 -51.93 -0.36 0.17 16 27 H 0.07 1.10 7.39 -51.93 -0.38 0.72 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 32 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.39 7.47 8.44 -40.82 -0.34 7.12 16 34 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.12 3.38 5.20 -51.93 -0.27 3.11 16 36 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 38 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 42 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.27 6.27 -51.93 -0.33 0.94 16 46 H 0.08 0.94 6.72 -51.93 -0.35 0.59 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -28.04 358.44 -9.11 -37.15 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.18 Total: 11.83 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.66 Total: -19.13 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.27 Total: -37.70 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.04 -9.11 -37.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.683 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds