Wall clock time and date at job start Tue Mar 31 2020 01:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 C 1.53002 * 109.47204 * 240.00099 * 2 1 3 5 5 C 1.52998 * 109.46922 * 295.90524 * 4 2 1 6 6 C 1.50709 * 112.84607 * 296.36484 * 5 4 2 7 7 O 1.21273 * 119.99953 * 114.04562 * 6 5 4 8 8 N 1.34773 * 120.00082 * 294.04136 * 6 5 4 9 9 C 1.46496 * 120.00213 * 185.01016 * 8 6 5 10 10 C 1.53001 * 109.47047 * 184.88096 * 9 8 6 11 11 C 1.50700 * 115.55346 * 280.80771 * 10 9 8 12 12 H 1.07992 * 120.00078 * 144.43544 * 11 10 9 13 13 C 1.37882 * 119.99841 * 324.43529 * 11 10 9 14 14 N 1.31513 * 120.00058 * 343.14218 * 13 11 10 15 15 Si 1.86800 * 119.99661 * 163.14344 * 13 11 10 16 16 H 1.48496 * 109.47405 * 60.00002 * 15 13 11 17 17 H 1.48499 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47198 * 299.99939 * 15 13 11 19 19 C 1.53009 * 117.49589 * 135.10486 * 10 9 8 20 20 C 1.52998 * 117.49834 * 66.48321 * 10 9 8 21 21 C 1.53784 * 113.61530 * 165.06258 * 5 4 2 22 22 C 1.53785 * 87.07868 * 220.01608 * 21 5 4 23 23 C 1.53777 * 87.08318 * 25.43028 * 22 21 5 24 24 H 1.08995 * 109.46924 * 198.34206 * 1 2 3 25 25 H 1.09005 * 109.46812 * 318.33795 * 1 2 3 26 26 H 1.09001 * 109.46955 * 78.33799 * 1 2 3 27 27 H 1.08998 * 109.47242 * 119.99489 * 2 1 3 28 28 H 1.09001 * 109.47196 * 299.99932 * 3 2 1 29 29 H 1.09005 * 109.47494 * 59.99774 * 3 2 1 30 30 H 1.09001 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47171 * 55.90116 * 4 2 1 32 32 H 1.09001 * 109.47190 * 175.90150 * 4 2 1 33 33 H 0.97010 * 119.99922 * 5.01644 * 8 6 5 34 34 H 1.09000 * 109.47261 * 304.88723 * 9 8 6 35 35 H 1.09007 * 109.46912 * 64.88491 * 9 8 6 36 36 H 0.96995 * 119.99449 * 185.01201 * 14 13 11 37 37 H 1.08993 * 117.49695 * 359.97438 * 19 10 9 38 38 H 1.08993 * 117.49534 * 145.01915 * 19 10 9 39 39 H 1.09000 * 117.49724 * 214.97715 * 20 10 9 40 40 H 1.09001 * 117.49626 * 359.97427 * 20 10 9 41 41 H 1.09000 * 113.60606 * 334.55871 * 21 5 4 42 42 H 1.08999 * 113.61651 * 105.46569 * 21 5 4 43 43 H 1.09000 * 113.61117 * 270.88375 * 22 21 5 44 44 H 1.08997 * 113.61507 * 139.97501 * 22 21 5 45 45 H 1.09002 * 113.61592 * 220.02435 * 23 22 21 46 46 H 1.08998 * 113.61661 * 89.11710 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6159 -2.1904 -1.1988 6 6 2.2305 -2.9375 -0.0432 7 8 1.5262 -3.3594 0.8494 8 7 3.5628 -3.1369 -0.0018 9 6 4.1481 -3.9561 1.0623 10 6 5.6737 -3.9227 0.9509 11 6 6.2685 -4.8224 -0.1016 12 1 7.1435 -4.5067 -0.6502 13 6 5.6955 -6.0488 -0.3642 14 7 4.8576 -6.5812 0.4983 15 14 6.1096 -6.9538 -1.9449 16 1 7.5693 -7.2220 -1.9941 17 1 5.3679 -8.2396 -1.9880 18 1 5.7201 -6.1191 -3.1098 19 6 6.4719 -3.7195 2.2404 20 6 6.3723 -2.5875 1.2158 21 6 1.7519 -2.9175 -2.5471 22 6 0.4194 -3.6112 -2.2179 23 6 0.0978 -2.3982 -1.3291 24 1 -0.3633 -0.9754 0.3234 25 1 -0.3633 0.7678 0.6832 26 1 -0.3633 0.2077 -1.0065 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6180 -0.2516 -2.1377 32 1 3.1276 -0.6581 -1.2867 33 1 4.1341 -2.7378 -0.6766 34 1 3.8458 -3.5617 2.0324 35 1 3.7990 -4.9840 0.9631 36 1 4.5109 -7.4748 0.3493 37 1 5.9101 -3.6093 3.1678 38 1 7.4273 -4.2368 2.3276 39 1 7.2623 -2.3601 0.6290 40 1 5.7449 -1.7329 1.4690 41 1 1.6967 -2.2526 -3.4090 42 1 2.6004 -3.6003 -2.5913 43 1 0.5370 -4.5411 -1.6616 44 1 -0.2444 -3.7114 -3.0766 45 1 -0.3890 -2.6617 -0.3901 46 1 -0.4095 -1.5914 -1.8582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431173676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:37 Heat of formation + Delta-G solvation = -28.318150 kcal Electronic energy + Delta-G solvation = -23459.195788 eV Core-core repulsion = 20348.871095 eV Total energy + Delta-G solvation = -3110.324693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -41.81178 -39.17255 -38.07050 -36.33951 -34.78612 -34.26825 -30.03468 -28.39591 -27.99622 -27.20897 -26.09534 -24.58666 -23.09943 -22.49619 -21.16653 -20.69242 -19.91085 -18.26200 -17.37516 -16.91012 -16.84610 -16.50755 -15.99305 -15.54145 -15.48533 -14.99131 -14.74626 -14.61224 -14.18828 -13.67723 -13.55288 -13.44889 -13.18620 -13.12800 -12.85214 -12.79039 -12.67137 -12.64732 -12.33819 -12.24748 -12.11334 -11.91157 -11.58416 -11.43995 -11.35153 -11.15903 -11.08241 -10.76476 -10.69462 -10.60374 -10.10403 -9.69435 -8.10710 -6.20983 1.40620 1.44144 1.50781 1.80806 2.38667 2.43442 2.97241 3.48363 3.59234 3.65575 3.80336 3.92590 4.03622 4.10685 4.20298 4.26992 4.38448 4.51004 4.59983 4.68838 4.77732 4.79388 4.80909 4.84498 4.86648 4.90742 4.91533 5.01916 5.05070 5.07369 5.09200 5.13046 5.20766 5.24901 5.31808 5.37536 5.50348 5.51577 5.53465 5.55615 5.57298 5.77757 5.99563 6.35955 6.73936 6.89399 7.40176 7.47824 8.86937 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.006185 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.828330 B = 4526.171827 C = 5395.562916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.140 4.140 4 C -0.088 4.088 5 C -0.104 4.104 6 C 0.526 3.474 7 O -0.599 6.599 8 N -0.698 5.698 9 C 0.153 3.847 10 C 0.013 3.987 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.031 3.969 14 N -0.900 5.900 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.291 1.291 18 H -0.264 1.264 19 C -0.202 4.202 20 C -0.176 4.176 21 C -0.120 4.120 22 C -0.150 4.150 23 C -0.105 4.105 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.403 0.597 34 H 0.013 0.987 35 H 0.089 0.911 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 13.676 -8.105 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.197 4.197 4 C -0.125 4.125 5 C -0.107 4.107 6 C 0.313 3.687 7 O -0.481 6.481 8 N -0.346 5.346 9 C 0.030 3.970 10 C 0.012 3.988 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.170 4.170 14 N -0.538 5.538 15 Si 0.773 3.227 16 H -0.195 1.195 17 H -0.217 1.217 18 H -0.189 1.189 19 C -0.241 4.241 20 C -0.214 4.214 21 C -0.157 4.157 22 C -0.187 4.187 23 C -0.143 4.143 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.238 0.762 34 H 0.032 0.968 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.872 13.204 -7.473 17.093 hybrid contribution 0.782 -1.070 -0.067 1.327 sum -7.090 12.134 -7.540 15.949 Atomic orbital electron populations 1.22082 0.94422 1.01391 1.02667 1.21067 0.96958 0.96700 0.97033 1.21799 1.00786 0.94668 1.02463 1.21622 1.01220 0.90395 0.99261 1.21984 0.98668 0.96695 0.93378 1.20633 0.81912 0.79041 0.87090 1.90591 1.62325 1.54010 1.41220 1.45880 1.07034 1.51142 1.30510 1.20956 0.92849 0.96380 0.86841 1.19192 0.89566 0.94808 0.95213 1.20698 1.12784 1.01587 1.19103 0.91930 1.25650 0.94603 0.98043 0.98736 1.69894 1.32873 1.15118 1.35868 0.85765 0.78363 0.77581 0.80955 1.19529 1.21708 1.18927 1.22954 1.02610 1.04425 0.94064 1.22846 1.03006 0.91820 1.03696 1.23056 0.97654 0.99161 0.95850 1.22858 0.98293 0.97092 1.00481 1.23045 0.93077 0.98436 0.99711 0.93542 0.92819 0.90371 0.95265 0.90757 0.92822 0.93037 0.87620 0.91604 0.76183 0.96834 0.89370 0.92866 0.91295 0.90565 0.89270 0.89848 0.85510 0.93075 0.93883 0.88631 0.92600 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 7.80 71.98 0.56 -2.56 16 2 C -0.10 -2.33 2.82 -10.79 -0.03 -2.36 16 3 C -0.14 -2.60 9.11 71.98 0.66 -1.94 16 4 C -0.09 -1.92 4.21 30.59 0.13 -1.79 16 5 C -0.10 -2.94 0.78 -52.40 -0.04 -2.98 16 6 C 0.53 21.14 5.52 87.66 0.48 21.62 16 7 O -0.60 -29.36 15.93 -3.01 -0.05 -29.40 16 8 N -0.70 -29.18 5.52 -463.06 -2.56 -31.74 16 9 C 0.15 7.62 5.34 86.38 0.46 8.08 16 10 C 0.01 0.62 1.74 -52.92 -0.09 0.53 16 11 C -0.50 -26.07 9.01 25.60 0.23 -25.84 16 12 H 0.06 3.16 7.87 -2.91 -0.02 3.14 16 13 C 0.03 1.61 5.15 84.66 0.44 2.04 16 14 N -0.90 -50.93 10.82 21.45 0.23 -50.70 16 15 Si 0.95 41.69 29.57 68.60 2.03 43.72 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 C -0.20 -9.06 9.88 30.60 0.30 -8.76 16 20 C -0.18 -7.09 9.93 30.60 0.30 -6.78 16 21 C -0.12 -3.01 7.22 31.12 0.22 -2.78 16 22 C -0.15 -3.98 7.80 31.12 0.24 -3.73 16 23 C -0.11 -2.68 4.70 31.12 0.15 -2.53 16 24 H 0.05 1.19 5.64 -2.39 -0.01 1.18 16 25 H 0.05 1.04 8.00 -2.38 -0.02 1.02 16 26 H 0.08 1.23 6.98 -2.39 -0.02 1.22 16 27 H 0.03 0.92 7.39 -2.39 -0.02 0.90 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.62 8.02 -2.39 -0.02 1.60 16 32 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.40 15.25 8.44 -92.70 -0.78 14.46 16 34 H 0.01 0.69 7.92 -2.39 -0.02 0.67 16 35 H 0.09 5.11 5.20 -2.38 -0.01 5.09 16 36 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 37 H 0.07 3.00 8.09 -2.39 -0.02 2.98 16 38 H 0.08 3.43 8.14 -2.39 -0.02 3.42 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.13 2.19 8.07 -2.39 -0.02 2.17 16 42 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.75 6.27 -2.39 -0.01 1.73 16 46 H 0.12 2.18 6.72 -2.39 -0.02 2.17 16 Total: -1.00 -64.17 358.44 3.83 -60.34 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.16 Total: 37.57 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 4.01 Total: -29.78 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.33 Total: -82.44 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.17 3.83 -60.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.021 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds