Wall clock time and date at job start Tue Mar 31 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47339 * 2 1 4 4 H 1.08997 * 109.47257 * 54.99963 * 3 2 1 5 5 C 1.53005 * 109.46844 * 294.99882 * 3 2 1 6 6 C 1.53005 * 109.47004 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46806 * 60.00093 * 6 5 3 8 8 C 1.52999 * 109.47531 * 299.99667 * 7 6 5 9 9 C 1.52999 * 109.46813 * 60.00011 * 8 7 6 10 10 H 1.09006 * 109.47173 * 60.00388 * 9 8 7 11 11 C 1.50700 * 109.47271 * 180.02562 * 9 8 7 12 12 O 1.21282 * 119.99952 * 95.49232 * 11 9 8 13 13 N 1.34773 * 119.99974 * 275.49421 * 11 9 8 14 14 C 1.46506 * 119.99783 * 174.84317 * 13 11 9 15 15 C 1.53004 * 109.46890 * 185.13208 * 14 13 11 16 16 C 1.50706 * 115.55685 * 271.07501 * 15 14 13 17 17 H 1.07997 * 119.99520 * 144.36359 * 16 15 14 18 18 C 1.37873 * 119.99943 * 324.35996 * 16 15 14 19 19 N 1.31513 * 120.00454 * 336.82329 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 156.82292 * 18 16 15 21 21 H 1.48504 * 109.46974 * 89.99974 * 20 18 16 22 22 H 1.48497 * 109.47192 * 210.00089 * 20 18 16 23 23 H 1.48495 * 109.47233 * 330.00316 * 20 18 16 24 24 C 1.52997 * 117.50312 * 56.76458 * 15 14 13 25 25 C 1.52998 * 60.03229 * 107.50231 * 24 15 14 26 26 H 1.08997 * 109.46674 * 300.00016 * 1 2 3 27 27 H 1.08994 * 109.46908 * 60.00379 * 1 2 3 28 28 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46789 * 239.99701 * 2 1 3 30 30 H 1.09002 * 109.46736 * 120.00218 * 2 1 3 31 31 H 1.08997 * 109.47260 * 300.00080 * 5 3 2 32 32 H 1.08994 * 109.47166 * 60.00334 * 5 3 2 33 33 H 1.09000 * 109.46955 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47272 * 300.00187 * 6 5 3 35 35 H 1.09001 * 109.47306 * 60.00483 * 7 6 5 36 36 H 1.09008 * 109.47178 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.46845 * 300.00684 * 8 7 6 38 38 H 1.08994 * 109.47434 * 179.97438 * 8 7 6 39 39 H 0.96997 * 120.00336 * 354.83274 * 13 11 9 40 40 H 1.08996 * 109.47266 * 65.12508 * 14 13 11 41 41 H 1.09000 * 109.47122 * 305.12504 * 14 13 11 42 42 H 0.96999 * 119.99938 * 185.02043 * 19 18 16 43 43 H 1.09007 * 117.49682 * 0.02562 * 24 15 14 44 44 H 1.08992 * 117.50193 * 215.00271 * 24 15 14 45 45 H 1.09000 * 117.49816 * 107.48238 * 25 24 15 46 46 H 1.09004 * 117.49694 * 252.47571 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1448 3.5691 -1.3072 7 6 3.6696 3.5714 -1.1812 8 6 4.0744 2.8875 0.1262 9 6 3.5649 1.4448 0.1260 10 1 3.9999 0.9059 -0.7158 11 6 3.9630 0.7712 1.4140 12 8 3.1846 0.7311 2.3431 13 7 5.1841 0.2134 1.5332 14 6 5.6136 -0.3411 2.8195 15 6 7.0722 -0.7921 2.7188 16 6 7.2835 -2.2107 2.2561 17 1 8.1288 -2.4540 1.6295 18 6 6.3979 -3.1979 2.6329 19 7 5.6645 -3.0459 3.7139 20 14 6.2396 -4.7515 1.6078 21 1 7.2004 -5.7705 2.1017 22 1 4.8564 -5.2799 1.7200 23 1 6.5365 -4.4393 0.1867 24 6 8.1066 0.2515 2.2928 25 6 8.0589 -0.2290 3.7446 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5873 -2.1492 32 1 0.5491 2.1252 -1.3970 33 1 1.8569 4.0563 -2.2388 34 1 1.7099 4.1079 -0.4654 35 1 4.1046 3.0327 -2.0230 36 1 4.0327 4.5992 -1.1815 37 1 3.6394 3.4263 0.9679 38 1 5.1607 2.8887 0.2157 39 1 5.7785 0.1789 0.7675 40 1 4.9859 -1.1948 3.0749 41 1 5.5217 0.4216 3.5928 42 1 5.0954 -3.7695 4.0196 43 1 7.7482 1.2596 2.0846 44 1 8.9399 -0.0878 1.6776 45 1 8.8606 -0.8846 4.0844 46 1 7.6694 0.4632 4.4912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431180622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:22 Heat of formation + Delta-G solvation = -66.934132 kcal Electronic energy + Delta-G solvation = -23028.768957 eV Core-core repulsion = 19916.769750 eV Total energy + Delta-G solvation = -3111.999207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33434 -39.17909 -38.17048 -35.06557 -34.54955 -34.28139 -32.06441 -29.93546 -28.12503 -27.17504 -24.78029 -24.13803 -23.01669 -21.60598 -21.18949 -21.15530 -20.49960 -18.62563 -17.63170 -16.85562 -16.69735 -16.11669 -15.80829 -15.74705 -15.45117 -15.07614 -14.85137 -14.38351 -14.22685 -14.14766 -13.70667 -13.54171 -13.44800 -13.24217 -12.87653 -12.71180 -12.50587 -12.36512 -12.32164 -12.16559 -12.09112 -11.97380 -11.66295 -11.43532 -11.33251 -11.24564 -11.19094 -10.86382 -10.65906 -10.47245 -10.08392 -9.70824 -8.19235 -6.18384 1.37045 1.43036 1.51646 1.80160 2.37712 2.43301 2.94039 3.59384 3.62924 3.75724 3.82858 4.12232 4.20218 4.25479 4.34515 4.36729 4.44805 4.48483 4.51028 4.53600 4.64002 4.65740 4.74791 4.82327 4.83959 4.92688 4.95823 5.01180 5.10572 5.14419 5.18335 5.22317 5.24995 5.28717 5.34895 5.36850 5.42926 5.52915 5.53652 5.56272 5.63129 5.75895 5.91396 6.35544 6.74024 6.87262 7.39090 7.47015 8.83979 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.005407 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.458774 B = 5176.938194 C = 6102.018505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C -0.062 4.062 4 H 0.056 0.944 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.104 4.104 9 C -0.094 4.094 10 H 0.105 0.895 11 C 0.503 3.497 12 O -0.595 6.595 13 N -0.706 5.706 14 C 0.163 3.837 15 C 0.011 3.989 16 C -0.513 4.513 17 H 0.063 0.937 18 C 0.032 3.968 19 N -0.894 5.894 20 Si 0.942 3.058 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.260 1.260 24 C -0.172 4.172 25 C -0.203 4.203 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 11.804 -13.626 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.081 4.081 4 H 0.074 0.926 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.142 4.142 9 C -0.115 4.115 10 H 0.123 0.877 11 C 0.291 3.709 12 O -0.477 6.477 13 N -0.356 5.356 14 C 0.039 3.961 15 C 0.010 3.990 16 C -0.550 4.550 17 H 0.081 0.919 18 C -0.170 4.170 19 N -0.531 5.531 20 Si 0.767 3.233 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.210 4.210 25 C -0.241 4.241 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.625 11.705 -12.872 18.616 hybrid contribution 0.346 -1.302 0.343 1.390 sum -6.279 10.403 -12.528 17.453 Atomic orbital electron populations 1.21726 0.94531 1.01602 1.02152 1.21622 0.97360 0.96756 1.00743 1.20937 0.92077 0.95910 0.99216 0.92580 1.21624 1.01498 0.95864 0.95522 1.21572 0.95491 0.96237 1.02404 1.21516 0.96283 1.00979 0.96008 1.21467 1.00913 0.92213 0.99639 1.21426 0.98304 0.97899 0.93854 0.87718 1.21406 0.80856 0.78004 0.90598 1.90621 1.52067 1.61406 1.43598 1.46115 1.16754 1.58745 1.13948 1.20710 0.96357 0.95931 0.83115 1.19190 0.87282 0.92883 0.99641 1.20693 1.10688 0.91752 1.31843 0.91922 1.25646 0.95135 1.01330 0.94881 1.70083 1.28264 1.33508 1.21237 0.85809 0.77072 0.79869 0.80555 1.20058 1.21625 1.18427 1.22861 1.02647 0.98485 0.96974 1.22972 1.05044 1.04008 0.92122 0.93789 0.90333 0.93038 0.91408 0.95359 0.90778 0.90581 0.89940 0.92669 0.90519 0.90418 0.93028 0.91089 0.75858 0.91107 0.96250 0.92838 0.89140 0.89334 0.90900 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.67 71.98 0.70 -2.71 16 2 C -0.13 -3.65 5.19 30.59 0.16 -3.49 16 3 C -0.06 -1.62 1.35 -10.79 -0.01 -1.63 16 4 H 0.06 1.71 7.87 -2.39 -0.02 1.70 16 5 C -0.11 -1.91 4.96 30.60 0.15 -1.75 16 6 C -0.12 -1.84 5.92 30.60 0.18 -1.65 16 7 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 8 C -0.10 -2.35 5.19 30.59 0.16 -2.19 16 9 C -0.09 -2.55 2.05 -11.54 -0.02 -2.57 16 10 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 11 C 0.50 19.52 6.08 87.66 0.53 20.05 16 12 O -0.60 -28.50 15.03 -3.04 -0.05 -28.55 16 13 N -0.71 -28.33 5.41 -463.05 -2.51 -30.84 16 14 C 0.16 7.97 5.43 86.38 0.47 8.44 16 15 C 0.01 0.52 1.83 -52.90 -0.10 0.42 16 16 C -0.51 -26.87 8.97 25.60 0.23 -26.64 16 17 H 0.06 3.22 7.92 -2.91 -0.02 3.19 16 18 C 0.03 1.72 4.93 84.65 0.42 2.13 16 19 N -0.89 -51.45 11.30 21.45 0.24 -51.21 16 20 Si 0.94 42.36 29.60 68.60 2.03 44.39 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 C -0.17 -6.72 9.57 30.59 0.29 -6.43 16 25 C -0.20 -9.03 9.88 30.62 0.30 -8.73 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.44 6.56 -2.39 -0.02 1.42 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.03 1.06 6.33 -2.39 -0.02 1.05 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.21 6.56 -2.39 -0.02 1.19 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 14.19 8.28 -92.71 -0.77 13.42 16 40 H 0.07 4.10 5.43 -2.39 -0.01 4.08 16 41 H 0.02 0.98 7.88 -2.39 -0.02 0.96 16 42 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 43 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 44 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.07 2.98 8.04 -2.38 -0.02 2.97 16 Total: -1.00 -64.69 356.77 3.53 -61.16 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.17 Total: 33.36 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.64 Total: -28.32 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.26 Total: -82.05 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -64.69 3.53 -61.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.775 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds