Wall clock time and date at job start Tue Mar 31 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 H 1.09008 * 109.47117 * 54.99443 * 3 2 1 5 5 C 1.52998 * 109.47022 * 294.99869 * 3 2 1 6 6 C 1.53007 * 109.47363 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46764 * 59.99755 * 6 5 3 8 8 C 1.53001 * 109.47234 * 299.99898 * 7 6 5 9 9 C 1.52998 * 109.47139 * 60.00513 * 8 7 6 10 10 H 1.08998 * 109.47625 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47012 * 59.99846 * 9 8 7 12 12 O 1.21290 * 119.99876 * 243.91674 * 11 9 8 13 13 N 1.34768 * 120.00095 * 63.91727 * 11 9 8 14 14 C 1.46504 * 120.00158 * 184.96535 * 13 11 9 15 15 C 1.52999 * 109.47277 * 185.07808 * 14 13 11 16 16 C 1.50700 * 115.55195 * 56.13923 * 15 14 13 17 17 H 1.08006 * 119.99513 * 270.87696 * 16 15 14 18 18 C 1.37869 * 120.00176 * 90.87428 * 16 15 14 19 19 N 1.31516 * 120.00051 * 3.80149 * 18 16 15 20 20 Si 1.86800 * 120.00205 * 183.79731 * 18 16 15 21 21 H 1.48505 * 109.47333 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47376 * 119.99956 * 20 18 16 23 23 H 1.48503 * 109.47255 * 240.00586 * 20 18 16 24 24 C 1.53000 * 117.49608 * 270.46891 * 15 14 13 25 25 C 1.52995 * 117.50020 * 201.80896 * 15 14 13 26 26 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47578 * 300.00458 * 1 2 3 28 28 H 1.09006 * 109.46457 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.47568 * 239.99510 * 2 1 3 30 30 H 1.09002 * 109.46872 * 119.99725 * 2 1 3 31 31 H 1.09008 * 109.46827 * 299.99752 * 5 3 2 32 32 H 1.09000 * 109.47290 * 59.99803 * 5 3 2 33 33 H 1.08998 * 109.46926 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46854 * 300.00204 * 6 5 3 35 35 H 1.08998 * 109.47475 * 60.00227 * 7 6 5 36 36 H 1.09004 * 109.46802 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47143 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47159 * 300.00523 * 8 7 6 39 39 H 0.97006 * 120.00296 * 4.96382 * 13 11 9 40 40 H 1.09004 * 109.46999 * 305.07359 * 14 13 11 41 41 H 1.08998 * 109.47319 * 65.07582 * 14 13 11 42 42 H 0.97006 * 119.99775 * 185.00535 * 19 18 16 43 43 H 1.09001 * 117.50015 * 0.02562 * 24 15 14 44 44 H 1.09000 * 117.49695 * 145.01945 * 24 15 14 45 45 H 1.08999 * 117.50433 * 214.98079 * 25 15 14 46 46 H 1.09007 * 117.49726 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 2.1449 3.5692 -1.3072 7 6 3.6697 3.5715 -1.1811 8 6 4.0743 2.8875 0.1264 9 6 3.5649 1.4448 0.1262 10 1 3.8535 0.9574 1.0573 11 6 4.1663 0.6999 -1.0376 12 8 3.4515 0.2763 -1.9212 13 7 5.4985 0.5044 -1.0966 14 6 6.0952 -0.1229 -2.2784 15 6 7.5905 -0.3417 -2.0396 16 6 7.9421 -1.1492 -0.8167 17 1 8.0877 -0.6556 0.1328 18 6 8.0777 -2.5181 -0.9100 19 7 7.9743 -3.1109 -2.0794 20 14 8.4086 -3.5307 0.6244 21 1 8.4798 -2.6322 1.8047 22 1 7.3111 -4.5124 0.8158 23 1 9.6976 -4.2524 0.4728 24 6 8.5422 0.7882 -2.4377 25 6 8.4873 -0.4956 -3.2695 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3632 0.5139 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0701 1.5873 -2.1492 32 1 0.5490 2.1252 -1.3970 33 1 1.8569 4.0563 -2.2388 34 1 1.7099 4.1080 -0.4654 35 1 4.1047 3.0327 -2.0228 36 1 4.0326 4.5993 -1.1805 37 1 5.1606 2.8895 0.2164 38 1 3.6393 3.4263 0.9681 39 1 6.0623 0.7790 -0.3565 40 1 5.6125 -1.0827 -2.4631 41 1 5.9565 0.5259 -3.1432 42 1 7.9971 -4.0790 -2.1361 43 1 8.1030 1.6875 -2.8694 44 1 9.4228 0.9472 -1.8153 45 1 9.3318 -1.1807 -3.1942 46 1 8.0120 -0.4406 -4.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431180624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:26 Heat of formation + Delta-G solvation = -48.133281 kcal Electronic energy + Delta-G solvation = -23255.644270 eV Core-core repulsion = 20144.460329 eV Total energy + Delta-G solvation = -3111.183941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34085 -37.41824 -36.30538 -34.04330 -33.08298 -31.95073 -30.92595 -28.84511 -26.41648 -25.26638 -23.67390 -22.85493 -21.14573 -20.76926 -20.36252 -19.52620 -18.67887 -16.32270 -16.04455 -15.57598 -15.05994 -14.74211 -14.61502 -14.28686 -13.82168 -13.66363 -13.50456 -13.16858 -12.93489 -12.69743 -12.42247 -12.13514 -11.80957 -11.70275 -11.53702 -11.32013 -11.22273 -11.01950 -10.92362 -10.87298 -10.57641 -10.53046 -10.36481 -10.20620 -9.85618 -9.80959 -9.50691 -9.08465 -8.83441 -8.44566 -8.24677 -7.98573 -6.08853 -4.18059 3.24021 3.28112 3.33267 3.34646 3.94222 4.34904 4.72420 4.84271 4.89888 5.18554 5.20935 5.26573 5.32387 5.37496 5.48553 5.51617 5.58907 5.61660 5.72545 5.79832 5.83582 5.95589 6.01607 6.06610 6.08545 6.13897 6.25287 6.33858 6.34023 6.36737 6.40433 6.49138 6.52876 6.54343 6.70273 6.71398 6.79971 6.95226 7.13863 7.37206 7.39959 7.59453 7.79314 8.33082 8.37458 8.83428 8.97982 9.49213 10.98632 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.005290 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.185353 B = 5291.708922 C = 6042.873489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.058 4.058 4 H 0.065 0.935 5 C -0.132 4.132 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.108 4.108 9 C -0.107 4.107 10 H 0.090 0.910 11 C 0.513 3.487 12 O -0.549 6.549 13 N -0.701 5.701 14 C 0.164 3.836 15 C 0.020 3.980 16 C -0.495 4.495 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.875 5.875 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.213 4.213 25 C -0.138 4.138 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 10.913 4.166 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.077 4.077 4 H 0.083 0.917 5 C -0.169 4.169 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.145 4.145 9 C -0.129 4.129 10 H 0.108 0.892 11 C 0.299 3.701 12 O -0.429 6.429 13 N -0.349 5.349 14 C 0.041 3.959 15 C 0.019 3.981 16 C -0.533 4.533 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.511 5.511 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.251 4.251 25 C -0.176 4.176 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.148 10.429 3.412 14.946 hybrid contribution 0.524 -0.599 1.214 1.452 sum -9.624 9.830 4.626 14.514 Atomic orbital electron populations 1.21769 0.96550 1.01005 1.01142 1.21796 0.95257 0.96545 1.03462 1.20861 0.92357 0.96446 0.98025 0.91702 1.21954 1.00036 0.95130 0.99779 1.21518 0.95494 0.97486 1.00875 1.21548 0.96325 1.00108 0.97921 1.21490 1.00901 0.93823 0.98321 1.21413 0.96847 0.96458 0.98163 0.89181 1.20373 0.82471 0.79776 0.87437 1.90502 1.59933 1.51506 1.40930 1.45962 1.06713 1.60530 1.21740 1.20927 0.94268 0.96080 0.84618 1.19073 0.86932 0.95870 0.96204 1.20343 1.48537 0.91200 0.93222 0.92277 1.24970 0.94419 0.97985 0.95647 1.70016 1.48888 1.09431 1.22759 0.86619 0.77889 0.80447 0.83541 1.19717 1.20961 1.21026 1.23075 1.03759 0.92126 1.06121 1.22427 1.03624 0.97555 0.93965 0.93282 0.93575 0.92675 0.89026 0.92956 0.88217 0.92723 0.92553 0.92753 0.91717 0.92245 0.91357 0.91344 0.76656 0.91558 0.94787 0.92966 0.91860 0.90482 0.89206 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 37.16 0.36 -1.37 16 2 C -0.13 -1.86 5.03 -26.73 -0.13 -2.00 16 3 C -0.06 -0.75 1.93 -90.62 -0.17 -0.93 16 4 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 5 C -0.13 -1.75 4.69 -26.73 -0.13 -1.87 16 6 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 7 C -0.12 -1.48 5.70 -26.73 -0.15 -1.63 16 8 C -0.11 -1.26 5.40 -26.73 -0.14 -1.41 16 9 C -0.11 -1.47 2.54 -91.77 -0.23 -1.70 16 10 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 11 C 0.51 9.06 5.31 -10.99 -0.06 9.01 16 12 O -0.55 -11.14 11.36 5.55 0.06 -11.07 16 13 N -0.70 -13.20 5.30 -60.29 -0.32 -13.52 16 14 C 0.16 3.62 5.58 -4.04 -0.02 3.60 16 15 C 0.02 0.46 1.66 -155.66 -0.26 0.20 16 16 C -0.50 -12.61 8.33 -34.44 -0.29 -12.90 16 17 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 18 C 0.07 1.95 5.41 -17.82 -0.10 1.85 16 19 N -0.87 -24.21 12.18 55.43 0.68 -23.54 16 20 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.21 -4.43 9.93 -26.69 -0.27 -4.70 16 25 C -0.14 -3.17 8.95 -26.70 -0.24 -3.41 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 29 H 0.09 1.57 5.79 -51.93 -0.30 1.27 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.63 5.37 -51.92 -0.28 1.35 16 32 H 0.05 0.67 6.56 -51.93 -0.34 0.32 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.95 7.22 -51.93 -0.37 0.57 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.40 7.04 8.05 -40.82 -0.33 6.71 16 40 H 0.07 1.68 8.10 -51.93 -0.42 1.26 16 41 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.09 2.25 7.85 -51.93 -0.41 1.84 16 46 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -27.53 351.22 -9.55 -37.08 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.25 Total: 9.01 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.99 Total: -18.77 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.36 Total: -37.06 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.53 -9.55 -37.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.050 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds