Wall clock time and date at job start Tue Mar 31 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47314 * 2 1 4 4 H 1.08999 * 109.46840 * 304.99760 * 3 2 1 5 5 C 1.52997 * 109.47173 * 64.99785 * 3 2 1 6 6 C 1.53001 * 109.47173 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47120 * 300.00052 * 6 5 3 8 8 C 1.53008 * 109.47133 * 60.00288 * 7 6 5 9 9 C 1.52997 * 109.46716 * 299.99354 * 8 7 6 10 10 H 1.09005 * 109.47401 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47475 * 300.00187 * 9 8 7 12 12 O 1.21281 * 120.00067 * 116.31664 * 11 9 8 13 13 N 1.34770 * 120.00203 * 296.31255 * 11 9 8 14 14 C 1.46496 * 120.00447 * 184.84744 * 13 11 9 15 15 C 1.52998 * 109.47557 * 185.00085 * 14 13 11 16 16 C 1.50703 * 115.54701 * 275.76195 * 15 14 13 17 17 H 1.08004 * 119.99780 * 114.59163 * 16 15 14 18 18 C 1.37883 * 120.00130 * 294.59285 * 16 15 14 19 19 N 1.31516 * 119.99742 * 352.73239 * 18 16 15 20 20 Si 1.86799 * 119.99975 * 172.73471 * 18 16 15 21 21 H 1.48499 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46958 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.46719 * 239.99743 * 20 18 16 24 24 C 1.52995 * 117.50375 * 130.05305 * 15 14 13 25 25 C 1.53000 * 117.50063 * 61.42370 * 15 14 13 26 26 H 1.09004 * 109.47176 * 299.99721 * 1 2 3 27 27 H 1.08998 * 109.47311 * 60.00048 * 1 2 3 28 28 H 1.09006 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47002 * 239.99760 * 2 1 3 30 30 H 1.09004 * 109.46987 * 120.00196 * 2 1 3 31 31 H 1.09011 * 109.46922 * 60.00092 * 5 3 2 32 32 H 1.08995 * 109.47359 * 300.00391 * 5 3 2 33 33 H 1.08998 * 109.46947 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.46755 * 60.00408 * 6 5 3 35 35 H 1.09005 * 109.47308 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47653 * 300.00324 * 7 6 5 37 37 H 1.08994 * 109.47133 * 59.99821 * 8 7 6 38 38 H 1.09004 * 109.46854 * 179.97438 * 8 7 6 39 39 H 0.97012 * 119.99950 * 4.84793 * 13 11 9 40 40 H 1.09001 * 109.47156 * 304.99903 * 14 13 11 41 41 H 1.09000 * 109.47244 * 64.99682 * 14 13 11 42 42 H 0.96998 * 119.99686 * 185.00511 * 19 18 16 43 43 H 1.09003 * 117.49927 * 359.97438 * 24 15 14 44 44 H 1.08999 * 117.50295 * 145.01855 * 24 15 14 45 45 H 1.08995 * 117.50394 * 214.97982 * 25 15 14 46 46 H 1.09003 * 117.49832 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3076 7 6 3.6706 3.5701 1.1822 8 6 4.0754 2.8860 -0.1252 9 6 3.5649 1.4437 -0.1254 10 1 3.8536 0.9562 -1.0566 11 6 4.1653 0.6981 1.0385 12 8 3.4493 0.2713 1.9195 13 7 5.4977 0.5056 1.1004 14 6 6.0710 -0.3093 2.1744 15 6 7.5979 -0.2659 2.0879 16 6 8.2228 -1.2471 1.1299 17 1 8.7485 -0.8894 0.2569 18 6 8.1234 -2.6016 1.3679 19 7 7.6106 -3.0346 2.4989 20 14 8.7171 -3.8216 0.0838 21 1 9.2473 -3.0846 -1.0913 22 1 9.7909 -4.6675 0.6640 23 1 7.5844 -4.6824 -0.3420 24 6 8.3691 0.0607 3.3683 25 6 8.2761 1.0965 2.2460 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5875 2.1492 32 1 0.5490 2.1253 1.3969 33 1 1.8571 4.0563 2.2387 34 1 1.7115 4.1082 0.4657 35 1 4.0344 4.5976 1.1819 36 1 4.1049 3.0307 2.0240 37 1 3.6412 3.4253 -0.9670 38 1 5.1618 2.8873 -0.2147 39 1 6.0772 0.9066 0.4337 40 1 5.7505 0.0837 3.1392 41 1 5.7303 -1.3394 2.0703 42 1 7.6069 -3.9840 2.6976 43 1 7.7886 0.2450 4.2723 44 1 9.3286 -0.4344 3.5182 45 1 9.1744 1.2829 1.6576 46 1 7.6345 1.9618 2.4120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431180626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:30 Heat of formation + Delta-G solvation = -48.084665 kcal Electronic energy + Delta-G solvation = -23261.173255 eV Core-core repulsion = 20149.991422 eV Total energy + Delta-G solvation = -3111.181833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35922 -37.46483 -36.31177 -34.04246 -33.04429 -32.06398 -30.92319 -28.85220 -26.40929 -25.23165 -23.67794 -22.88284 -21.29111 -20.76853 -20.37077 -19.40320 -18.77368 -16.43534 -16.00422 -15.59696 -15.01774 -14.80257 -14.62728 -14.22283 -13.92039 -13.65609 -13.44158 -13.17584 -13.10685 -12.62139 -12.45424 -12.06838 -11.75380 -11.67941 -11.54109 -11.32929 -11.21642 -11.01580 -10.94928 -10.88384 -10.58764 -10.52728 -10.35859 -10.30694 -9.86493 -9.81867 -9.56696 -9.03816 -8.85367 -8.60990 -8.18789 -8.05673 -6.10042 -4.16748 3.23968 3.26936 3.33361 3.35364 3.92222 4.34104 4.71148 4.82777 4.88067 5.11647 5.20314 5.25479 5.34676 5.36446 5.47295 5.48393 5.57559 5.60574 5.71036 5.78851 5.82602 5.94227 6.00233 6.03067 6.06748 6.13279 6.24320 6.30186 6.33371 6.35814 6.39460 6.46863 6.53619 6.61114 6.65110 6.69972 6.81734 6.97259 7.05369 7.31842 7.44032 7.50933 7.82758 8.33293 8.34482 8.82508 8.97269 9.48403 10.97743 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005192 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.489568 B = 5392.089803 C = 6170.510966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.058 4.058 4 H 0.065 0.935 5 C -0.132 4.132 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.108 4.108 10 H 0.091 0.909 11 C 0.513 3.487 12 O -0.546 6.546 13 N -0.710 5.710 14 C 0.164 3.836 15 C 0.034 3.966 16 C -0.498 4.498 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.165 4.165 25 C -0.208 4.208 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 10.878 -5.287 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.077 4.077 4 H 0.083 0.917 5 C -0.169 4.169 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.146 4.146 9 C -0.129 4.129 10 H 0.109 0.891 11 C 0.299 3.701 12 O -0.426 6.426 13 N -0.358 5.358 14 C 0.042 3.958 15 C 0.034 3.966 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.132 4.132 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.204 4.204 25 C -0.245 4.245 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.065 10.355 -4.573 15.147 hybrid contribution 0.761 -0.582 -0.972 1.365 sum -9.304 9.773 -5.545 14.588 Atomic orbital electron populations 1.21771 0.96538 1.01018 1.01143 1.21804 0.95280 0.96536 1.03467 1.20861 0.92332 0.96460 0.98032 0.91689 1.21948 1.00062 0.95135 0.99759 1.21513 0.95465 0.97483 1.00902 1.21553 0.96368 1.00134 0.97895 1.21499 1.00803 0.93917 0.98387 1.21436 0.96904 0.96467 0.98120 0.89133 1.20368 0.82520 0.79966 0.87234 1.90508 1.59959 1.51813 1.40277 1.46165 1.06529 1.51922 1.31220 1.20976 0.93128 0.94786 0.86955 1.19088 0.89207 0.91916 0.96426 1.20470 1.35343 0.89729 1.08049 0.92096 1.24987 0.94568 0.98333 0.95295 1.69975 1.43969 1.14792 1.22330 0.86576 0.78408 0.81334 0.81947 1.19702 1.21001 1.20887 1.22703 1.02638 1.02720 0.92322 1.22876 1.03020 0.93308 1.05317 0.92665 0.93579 0.93272 0.92980 0.88988 0.88247 0.92686 0.92531 0.92751 0.92215 0.91680 0.91306 0.91445 0.77068 0.94273 0.90315 0.92818 0.91713 0.90056 0.90448 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 37.16 0.36 -1.37 16 2 C -0.13 -1.86 5.03 -26.73 -0.13 -1.99 16 3 C -0.06 -0.75 1.93 -90.62 -0.18 -0.92 16 4 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.13 -1.75 4.69 -26.73 -0.13 -1.87 16 6 C -0.12 -1.35 5.92 -26.74 -0.16 -1.51 16 7 C -0.12 -1.48 5.70 -26.73 -0.15 -1.63 16 8 C -0.11 -1.25 5.38 -26.73 -0.14 -1.39 16 9 C -0.11 -1.46 2.54 -91.77 -0.23 -1.70 16 10 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 11 C 0.51 9.06 5.32 -10.99 -0.06 9.00 16 12 O -0.55 -11.17 11.35 5.56 0.06 -11.11 16 13 N -0.71 -13.32 5.41 -60.30 -0.33 -13.65 16 14 C 0.16 3.73 5.52 -4.04 -0.02 3.71 16 15 C 0.03 0.80 1.31 -155.66 -0.20 0.60 16 16 C -0.50 -12.85 8.82 -34.44 -0.30 -13.15 16 17 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 18 C 0.07 1.91 5.23 -17.82 -0.09 1.82 16 19 N -0.87 -24.28 12.58 55.43 0.70 -23.59 16 20 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C -0.17 -3.72 9.88 -26.73 -0.26 -3.99 16 25 C -0.21 -4.21 9.79 -26.73 -0.26 -4.47 16 26 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.58 5.78 -51.93 -0.30 1.28 16 31 H 0.10 1.64 5.38 -51.92 -0.28 1.36 16 32 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.95 7.22 -51.93 -0.37 0.58 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 39 H 0.40 6.77 7.94 -40.81 -0.32 6.44 16 40 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 41 H 0.08 2.08 7.26 -51.93 -0.38 1.70 16 42 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 43 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 44 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 45 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -27.71 351.11 -9.45 -37.16 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.18 Total: 9.23 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.97 Total: -18.88 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.37 Total: -37.24 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.06 Total: -11.11 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.71 -9.45 -37.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.928 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds