Wall clock time and date at job start Tue Mar 31 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 H 1.08995 * 109.47584 * 305.00017 * 3 2 1 5 5 C 1.53000 * 109.46930 * 65.00384 * 3 2 1 6 6 C 1.52999 * 109.46930 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47197 * 299.99457 * 6 5 3 8 8 C 1.53000 * 109.47055 * 59.99825 * 7 6 5 9 9 C 1.52998 * 109.46850 * 184.99772 * 3 2 1 10 10 H 1.09003 * 109.47200 * 300.00143 * 9 3 2 11 11 C 1.50698 * 109.47312 * 60.00203 * 9 3 2 12 12 O 1.21285 * 119.99572 * 36.45824 * 11 9 3 13 13 N 1.34778 * 120.00622 * 216.45773 * 11 9 3 14 14 C 1.46493 * 120.00472 * 185.72277 * 13 11 9 15 15 C 1.53001 * 109.47381 * 174.89535 * 14 13 11 16 16 C 1.50707 * 115.54718 * 303.69828 * 15 14 13 17 17 H 1.08002 * 119.99904 * 145.38603 * 16 15 14 18 18 C 1.37873 * 119.99839 * 325.39021 * 16 15 14 19 19 N 1.31514 * 120.00187 * 349.21753 * 18 16 15 20 20 Si 1.86802 * 119.99743 * 169.21887 * 18 16 15 21 21 H 1.48508 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47045 * 119.99793 * 20 18 16 23 23 H 1.48502 * 109.47388 * 239.99894 * 20 18 16 24 24 C 1.52995 * 117.50092 * 158.03078 * 15 14 13 25 25 C 1.52992 * 117.50112 * 89.36841 * 15 14 13 26 26 H 1.08999 * 109.47387 * 299.99941 * 1 2 3 27 27 H 1.09000 * 109.47023 * 60.00272 * 1 2 3 28 28 H 1.08999 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47387 * 240.00059 * 2 1 3 30 30 H 1.08997 * 109.46745 * 120.00431 * 2 1 3 31 31 H 1.08997 * 109.46933 * 299.99177 * 5 3 2 32 32 H 1.08995 * 109.47287 * 59.99451 * 5 3 2 33 33 H 1.09003 * 109.47336 * 59.99448 * 6 5 3 34 34 H 1.09001 * 109.47238 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47653 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46970 * 300.00215 * 7 6 5 37 37 H 1.08998 * 109.47554 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46913 * 60.00355 * 8 7 6 39 39 H 0.97001 * 119.99173 * 5.72058 * 13 11 9 40 40 H 1.09000 * 109.47096 * 294.89297 * 14 13 11 41 41 H 1.09004 * 109.47328 * 54.89392 * 14 13 11 42 42 H 0.97006 * 119.99495 * 185.03071 * 19 18 16 43 43 H 1.09005 * 117.49729 * 359.97438 * 24 15 14 44 44 H 1.08997 * 117.50103 * 145.01738 * 24 15 14 45 45 H 1.09003 * 117.50373 * 214.98568 * 25 15 14 46 46 H 1.09005 * 117.49991 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 2.1458 3.5688 1.3077 7 6 3.6706 3.5701 1.1823 8 6 4.0754 2.8860 -0.1250 9 6 3.5648 1.4443 -0.1257 10 1 3.9994 0.9052 0.7162 11 6 3.9635 0.7706 -1.4133 12 8 3.2850 0.9143 -2.4083 13 7 5.0741 0.0083 -1.4594 14 6 5.5311 -0.5438 -2.7370 15 6 6.8697 -1.2568 -2.5349 16 6 7.9694 -0.4173 -1.9372 17 1 8.6893 -0.8665 -1.2691 18 6 8.0564 0.9242 -2.2434 19 7 7.3214 1.4269 -3.2111 20 14 9.2185 2.0277 -1.2835 21 1 9.9267 1.2248 -0.2544 22 1 10.2097 2.6291 -2.2115 23 1 8.4424 3.1067 -0.6210 24 6 7.2693 -2.3148 -3.5652 25 6 6.8309 -2.7399 -2.1616 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1252 1.3969 32 1 2.0698 1.5874 2.1491 33 1 1.7115 4.1081 0.4658 34 1 1.8571 4.0562 2.2389 35 1 4.0344 4.5976 1.1820 36 1 4.1048 3.0308 2.0242 37 1 5.1617 2.8873 -0.2146 38 1 3.6412 3.4253 -0.9669 39 1 5.5708 -0.1745 -0.6465 40 1 4.7937 -1.2545 -3.1102 41 1 5.6549 0.2638 -3.4585 42 1 7.4351 2.3534 -3.4753 43 1 6.5783 -2.5034 -4.3869 44 1 8.3275 -2.4041 -3.8106 45 1 7.6010 -3.1088 -1.4840 46 1 5.8517 -3.2080 -2.0604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431180627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:34 Heat of formation + Delta-G solvation = -53.220238 kcal Electronic energy + Delta-G solvation = -23299.765901 eV Core-core repulsion = 20188.361372 eV Total energy + Delta-G solvation = -3111.404528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82497 -37.62063 -36.44499 -33.83096 -32.93075 -32.18550 -30.86676 -28.91858 -26.14820 -25.33587 -23.76849 -22.80675 -21.23432 -20.52606 -19.88282 -19.33726 -18.98117 -16.83921 -15.92466 -15.29166 -14.84558 -14.67243 -14.48433 -14.29640 -13.88016 -13.77242 -13.27139 -13.13375 -13.11560 -12.67752 -12.31586 -12.14417 -11.67271 -11.55813 -11.37440 -11.34771 -11.10283 -11.06319 -10.94607 -10.72861 -10.65707 -10.51687 -10.28300 -10.27021 -10.10344 -9.81141 -9.60489 -9.14981 -8.83790 -8.75372 -8.22053 -7.80872 -6.06094 -4.17030 3.18680 3.29373 3.31905 3.52092 4.16094 4.29266 4.74001 4.84371 4.89435 5.01519 5.17239 5.28308 5.39232 5.47343 5.49202 5.54414 5.61812 5.64873 5.70622 5.78347 5.81871 5.94390 6.02983 6.08611 6.12358 6.14997 6.23042 6.24930 6.31965 6.33836 6.42230 6.46838 6.56015 6.56715 6.61896 6.68520 6.72079 6.91872 7.10834 7.27774 7.57981 7.65519 7.96286 8.32630 8.61069 8.82931 9.23369 9.44141 10.89701 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.006251 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.385678 B = 4478.098476 C = 5680.148127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.068 4.068 4 H 0.080 0.920 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.098 4.098 10 H 0.080 0.920 11 C 0.513 3.487 12 O -0.562 6.562 13 N -0.691 5.691 14 C 0.158 3.842 15 C 0.038 3.962 16 C -0.497 4.497 17 H 0.061 0.939 18 C 0.078 3.922 19 N -0.866 5.866 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.197 4.197 25 C -0.213 4.213 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.396 0.604 40 H 0.020 0.980 41 H 0.115 0.885 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 1.636 9.370 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.087 4.087 4 H 0.099 0.901 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.120 4.120 10 H 0.098 0.902 11 C 0.298 3.702 12 O -0.442 6.442 13 N -0.338 5.338 14 C 0.035 3.965 15 C 0.038 3.962 16 C -0.534 4.534 17 H 0.079 0.921 18 C -0.127 4.127 19 N -0.501 5.501 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.235 4.235 25 C -0.250 4.250 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.038 0.962 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.954 1.936 8.579 13.283 hybrid contribution 1.122 0.389 0.741 1.399 sum -8.832 2.325 9.320 13.049 Atomic orbital electron populations 1.21768 0.96105 1.01128 1.01544 1.21595 0.95779 0.96514 1.02112 1.20999 0.93288 0.96267 0.98146 0.90135 1.21637 1.00423 0.95574 0.97441 1.21551 0.95930 0.96885 1.01352 1.21528 0.95763 1.00374 0.97727 1.21403 1.01349 0.93679 0.97996 1.21291 0.96869 0.97214 0.96631 0.90174 1.20276 0.81111 0.79036 0.89759 1.90606 1.53405 1.63125 1.37051 1.45821 1.25829 1.50127 1.12008 1.21062 0.91287 0.98194 0.85918 1.19219 0.94398 0.85578 0.97054 1.20493 1.11793 0.92711 1.28449 0.92077 1.24949 0.95251 0.97822 0.94684 1.69827 1.38691 1.14968 1.26660 0.86611 0.80791 0.80781 0.80351 1.19670 1.20991 1.20710 1.22910 0.99959 1.09394 0.91263 1.22950 1.00187 1.02760 0.99097 0.92874 0.92760 0.93207 0.91377 0.92443 0.91800 0.92118 0.92009 0.92368 0.92031 0.91970 0.91225 0.91362 0.77074 0.96159 0.86774 0.92704 0.91570 0.90250 0.90666 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 2 C -0.12 -1.67 5.23 -26.73 -0.14 -1.81 16 3 C -0.07 -0.95 1.41 -90.62 -0.13 -1.08 16 4 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 5 C -0.11 -1.27 4.96 -26.73 -0.13 -1.40 16 6 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 7 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 8 C -0.11 -1.65 5.18 -26.76 -0.14 -1.79 16 9 C -0.10 -1.56 2.06 -91.80 -0.19 -1.75 16 10 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 11 C 0.51 10.43 5.65 -10.99 -0.06 10.36 16 12 O -0.56 -13.32 15.88 5.55 0.09 -13.23 16 13 N -0.69 -14.62 5.32 -60.30 -0.32 -14.94 16 14 C 0.16 3.76 4.78 -4.05 -0.02 3.74 16 15 C 0.04 0.90 1.93 -155.66 -0.30 0.60 16 16 C -0.50 -12.61 8.52 -34.44 -0.29 -12.90 16 17 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 18 C 0.08 1.98 5.21 -17.82 -0.09 1.89 16 19 N -0.87 -23.18 10.69 55.43 0.59 -22.59 16 20 Si 0.89 19.94 29.55 -169.99 -5.02 14.91 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.20 -4.36 9.96 -26.70 -0.27 -4.62 16 25 C -0.21 -4.44 9.93 -26.70 -0.27 -4.70 16 26 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.65 6.56 -51.93 -0.34 0.30 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.40 7.90 8.14 -40.82 -0.33 7.57 16 40 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.11 3.11 5.87 -51.93 -0.30 2.81 16 42 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -27.68 357.15 -9.65 -37.33 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.38 Total: 11.01 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.98 Total: -17.86 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.27 Total: -37.53 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.68 -9.65 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431180627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.895 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds