Wall clock time and date at job start Tue Mar 31 2020 00:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47222 * 2 1 4 4 C 1.50696 * 109.46898 * 120.00266 * 2 1 3 5 5 O 1.21278 * 120.00212 * 124.77694 * 4 2 1 6 6 N 1.34782 * 119.99965 * 304.77257 * 4 2 1 7 7 C 1.46498 * 120.00053 * 185.00854 * 6 4 2 8 8 C 1.53002 * 109.47151 * 185.00076 * 7 6 4 9 9 C 1.50700 * 115.54915 * 54.72419 * 8 7 6 10 10 H 1.07999 * 119.99780 * 220.04531 * 9 8 7 11 11 C 1.37879 * 119.99562 * 39.76773 * 9 8 7 12 12 N 1.31511 * 120.00495 * 355.49411 * 11 9 8 13 13 Si 1.86800 * 119.99344 * 175.49253 * 11 9 8 14 14 H 1.48499 * 109.47409 * 90.00240 * 13 11 9 15 15 H 1.48506 * 109.46854 * 210.00048 * 13 11 9 16 16 H 1.48497 * 109.47723 * 329.99735 * 13 11 9 17 17 C 1.52998 * 117.51626 * 200.42768 * 8 7 6 18 18 C 1.53002 * 60.00239 * 107.48098 * 17 8 7 19 19 C 1.53005 * 109.46993 * 240.00054 * 2 1 3 20 20 C 1.54886 * 110.75461 * 178.01132 * 19 2 1 21 21 C 1.54264 * 104.19436 * 203.74234 * 20 19 2 22 22 C 1.53870 * 106.60142 * 23.60751 * 21 20 19 23 23 C 1.54266 * 106.59736 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47370 * 304.98254 * 1 2 3 25 25 H 1.09004 * 109.46884 * 64.97475 * 1 2 3 26 26 H 1.08998 * 109.47152 * 184.97613 * 1 2 3 27 27 H 1.09003 * 109.47119 * 184.98259 * 3 2 1 28 28 H 1.09004 * 109.46944 * 304.98028 * 3 2 1 29 29 H 1.09001 * 109.46857 * 64.97918 * 3 2 1 30 30 H 0.97000 * 119.99492 * 5.00987 * 6 4 2 31 31 H 1.09000 * 109.47027 * 65.00083 * 7 6 4 32 32 H 1.08998 * 109.47289 * 304.99963 * 7 6 4 33 33 H 0.97001 * 119.99997 * 185.00145 * 12 11 9 34 34 H 1.09002 * 117.49536 * 214.97162 * 17 8 7 35 35 H 1.08997 * 117.50197 * 359.97438 * 17 8 7 36 36 H 1.09000 * 117.49527 * 252.51141 * 18 17 8 37 37 H 1.08998 * 117.52198 * 107.47407 * 18 17 8 38 38 H 1.09005 * 110.66793 * 301.44625 * 19 2 1 39 39 H 1.09000 * 110.48551 * 322.42475 * 20 19 2 40 40 H 1.09006 * 110.48599 * 85.06367 * 20 19 2 41 41 H 1.09004 * 110.02781 * 264.32252 * 21 20 19 42 42 H 1.08997 * 110.03346 * 142.89919 * 21 20 19 43 43 H 1.08998 * 110.03578 * 240.71847 * 22 21 20 44 44 H 1.09004 * 110.07026 * 119.30487 * 22 21 20 45 45 H 1.08998 * 110.48619 * 217.71418 * 23 22 21 46 46 H 1.09001 * 110.60230 * 95.11996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7992 -1.6436 1.1213 6 7 1.6293 -0.3088 2.4522 7 6 2.2006 -0.9261 3.6517 8 6 1.4888 -0.3838 4.8927 9 6 -0.0115 -0.5249 4.8952 10 1 -0.6286 0.2761 5.2749 11 6 -0.5966 -1.6742 4.4075 12 7 0.1479 -2.6095 3.8593 13 14 -2.4468 -1.9027 4.5256 14 1 -3.0923 -1.3537 3.3062 15 1 -2.7603 -3.3496 4.6429 16 1 -2.9588 -1.1869 5.7217 17 6 2.2126 -0.5107 6.2347 18 6 2.0828 0.8574 5.5620 19 6 2.0400 -0.7213 -1.2493 20 6 3.5877 -0.6952 -1.3048 21 6 3.9155 -0.8700 -2.8020 22 6 2.6766 -0.3959 -3.5816 23 6 1.6392 0.0511 -2.5309 24 1 -0.3634 0.5892 0.8420 25 1 -0.3633 0.4347 -0.9312 26 1 -0.3633 -1.0238 0.0891 27 1 3.1264 1.4438 -0.0893 28 1 1.6057 1.9814 -0.8421 29 1 1.7514 1.9299 0.9312 30 1 0.9609 0.3890 2.5373 31 1 3.2633 -0.6908 3.7103 32 1 2.0701 -2.0071 3.6013 33 1 -0.2693 -3.3844 3.4514 34 1 1.6035 -0.6963 7.1194 35 1 3.1959 -0.9810 6.2337 36 1 2.9809 1.2872 5.1183 37 1 1.3883 1.5720 6.0036 38 1 1.6666 -1.7448 -1.2820 39 1 3.9664 0.2596 -0.9401 40 1 4.0041 -1.5186 -0.7243 41 1 4.1152 -1.9191 -3.0204 42 1 4.7798 -0.2617 -3.0685 43 1 2.2749 -1.2148 -4.1784 44 1 2.9389 0.4425 -4.2270 45 1 0.6335 -0.2279 -2.8451 46 1 1.7013 1.1265 -2.3640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431183676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:30 Heat of formation + Delta-G solvation = -37.733786 kcal Electronic energy + Delta-G solvation = -23448.989961 eV Core-core repulsion = 20338.256975 eV Total energy + Delta-G solvation = -3110.732985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.93457 -37.64953 -36.47977 -34.12397 -32.74016 -32.13134 -28.60462 -27.57801 -27.05367 -26.00154 -25.26545 -22.82368 -21.24665 -20.15633 -19.81019 -19.24539 -18.08049 -16.71181 -15.88813 -15.48433 -15.17214 -14.81145 -14.42887 -14.20340 -13.79230 -13.56858 -13.37276 -13.11184 -12.64555 -12.46591 -12.01587 -11.69770 -11.65439 -11.64760 -11.40380 -11.16308 -11.06965 -10.94098 -10.79559 -10.68945 -10.64215 -10.51598 -10.24226 -10.20250 -10.16799 -10.00092 -9.66350 -9.01192 -8.79722 -8.64255 -8.24072 -7.74123 -5.98362 -4.17476 3.21223 3.31097 3.32980 3.62602 4.17398 4.31061 4.73040 4.82324 4.88717 5.02187 5.23965 5.29757 5.33081 5.47991 5.60471 5.71672 5.73811 5.77587 5.80990 5.86742 5.95207 6.01434 6.02406 6.04802 6.08692 6.18812 6.25336 6.27678 6.32860 6.42964 6.47538 6.53156 6.56863 6.61748 6.72961 6.76526 6.78977 6.91712 7.14784 7.27509 7.61241 7.74753 8.00749 8.33409 8.68056 8.85680 9.32595 9.46519 10.92586 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.005446 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.488796 B = 5140.228730 C = 5782.043124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C -0.143 4.143 4 C 0.515 3.485 5 O -0.557 6.557 6 N -0.684 5.684 7 C 0.161 3.839 8 C 0.038 3.962 9 C -0.498 4.498 10 H 0.059 0.941 11 C 0.076 3.924 12 N -0.865 5.865 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.197 4.197 18 C -0.212 4.212 19 C -0.061 4.061 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.125 4.125 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.395 0.605 31 H 0.016 0.984 32 H 0.116 0.884 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 6.556 -11.164 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.200 4.200 4 C 0.300 3.700 5 O -0.437 6.437 6 N -0.331 5.331 7 C 0.038 3.962 8 C 0.037 3.963 9 C -0.535 4.535 10 H 0.078 0.922 11 C -0.128 4.128 12 N -0.501 5.501 13 Si 0.718 3.282 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.236 4.236 18 C -0.249 4.249 19 C -0.080 4.080 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.034 0.966 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.147 5.666 -11.241 12.975 hybrid contribution -1.372 0.175 0.252 1.406 sum 1.775 5.841 -10.989 12.571 Atomic orbital electron populations 1.21843 0.93088 1.02799 1.01963 1.20714 0.96733 0.96162 0.94145 1.21988 1.01605 0.94256 1.02162 1.20144 0.81601 0.83783 0.84456 1.90578 1.37411 1.28991 1.86699 1.45650 1.42418 1.39802 1.05218 1.21069 0.91117 1.01931 0.82122 1.19225 0.94239 0.93803 0.89018 1.20452 0.88732 1.01539 1.42784 0.92241 1.24970 0.97882 0.95412 0.94559 1.69829 1.34368 1.10006 1.35850 0.86613 0.85557 0.77493 0.78521 1.20609 1.21141 1.19878 1.22908 1.00859 0.99784 1.00031 1.22923 1.02079 0.91662 1.08222 1.21835 0.95760 0.98800 0.91617 1.22532 0.95452 1.02734 0.94936 1.22160 0.97313 1.00686 0.96189 1.22106 0.95977 1.00208 0.97748 1.22560 0.98291 1.00406 0.94933 0.91898 0.92212 0.92133 0.91927 0.91788 0.92151 0.77086 0.96633 0.86629 0.92714 0.90272 0.91548 0.91437 0.90682 0.90471 0.91913 0.89864 0.92284 0.92525 0.92336 0.92423 0.92051 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.17 37.16 0.30 -1.76 16 2 C -0.07 -1.15 0.47 -155.66 -0.07 -1.23 16 3 C -0.14 -1.87 7.77 37.16 0.29 -1.58 16 4 C 0.52 10.42 6.28 -10.98 -0.07 10.35 16 5 O -0.56 -13.07 14.06 5.56 0.08 -13.00 16 6 N -0.68 -14.41 5.13 -60.30 -0.31 -14.72 16 7 C 0.16 3.80 4.71 -4.04 -0.02 3.78 16 8 C 0.04 0.89 1.97 -155.66 -0.31 0.58 16 9 C -0.50 -12.58 8.41 -34.44 -0.29 -12.87 16 10 H 0.06 1.51 7.82 -52.49 -0.41 1.09 16 11 C 0.08 1.96 5.39 -17.82 -0.10 1.86 16 12 N -0.86 -23.20 10.48 55.43 0.58 -22.62 16 13 Si 0.89 20.16 29.54 -169.99 -5.02 15.13 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.20 -4.34 9.96 -26.73 -0.27 -4.61 16 18 C -0.21 -4.38 9.92 -26.73 -0.27 -4.64 16 19 C -0.06 -0.90 1.88 -88.61 -0.17 -1.06 16 20 C -0.12 -1.75 5.28 -25.08 -0.13 -1.88 16 21 C -0.13 -1.51 6.80 -25.62 -0.17 -1.68 16 22 C -0.12 -1.33 6.80 -25.62 -0.17 -1.50 16 23 C -0.12 -1.44 5.25 -25.06 -0.13 -1.58 16 24 H 0.06 0.94 7.38 -51.93 -0.38 0.55 16 25 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.83 5.88 -51.93 -0.31 0.52 16 28 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 29 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 30 H 0.40 7.94 7.10 -40.82 -0.29 7.65 16 31 H 0.02 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.12 3.16 5.86 -51.93 -0.30 2.85 16 33 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.89 5.71 -51.93 -0.30 0.60 16 40 H 0.08 1.45 6.71 -51.93 -0.35 1.10 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 46 H 0.07 0.76 5.76 -51.93 -0.30 0.46 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -27.43 348.86 -8.92 -36.35 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.94 Total: 11.40 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.57 Total: -17.82 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.27 Total: -37.34 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.43 -8.92 -36.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431183676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.380 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds