Wall clock time and date at job start Tue Mar 31 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47222 * 2 1 4 4 C 1.50696 * 109.46898 * 120.00266 * 2 1 3 5 5 O 1.21278 * 120.00212 * 124.77694 * 4 2 1 6 6 N 1.34782 * 119.99965 * 304.77257 * 4 2 1 7 7 C 1.46498 * 120.00053 * 185.00854 * 6 4 2 8 8 C 1.53002 * 109.47151 * 185.00076 * 7 6 4 9 9 C 1.50700 * 115.54915 * 54.72419 * 8 7 6 10 10 H 1.07999 * 119.99780 * 220.04531 * 9 8 7 11 11 C 1.37879 * 119.99562 * 39.76773 * 9 8 7 12 12 N 1.31511 * 120.00495 * 355.49411 * 11 9 8 13 13 Si 1.86800 * 119.99344 * 175.49253 * 11 9 8 14 14 H 1.48499 * 109.47409 * 90.00240 * 13 11 9 15 15 H 1.48506 * 109.46854 * 210.00048 * 13 11 9 16 16 H 1.48497 * 109.47723 * 329.99735 * 13 11 9 17 17 C 1.52998 * 117.51626 * 200.42768 * 8 7 6 18 18 C 1.53002 * 60.00239 * 107.48098 * 17 8 7 19 19 C 1.53005 * 109.46993 * 240.00054 * 2 1 3 20 20 C 1.54886 * 110.75461 * 178.01132 * 19 2 1 21 21 C 1.54264 * 104.19436 * 203.74234 * 20 19 2 22 22 C 1.53870 * 106.60142 * 23.60751 * 21 20 19 23 23 C 1.54266 * 106.59736 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47370 * 304.98254 * 1 2 3 25 25 H 1.09004 * 109.46884 * 64.97475 * 1 2 3 26 26 H 1.08998 * 109.47152 * 184.97613 * 1 2 3 27 27 H 1.09003 * 109.47119 * 184.98259 * 3 2 1 28 28 H 1.09004 * 109.46944 * 304.98028 * 3 2 1 29 29 H 1.09001 * 109.46857 * 64.97918 * 3 2 1 30 30 H 0.97000 * 119.99492 * 5.00987 * 6 4 2 31 31 H 1.09000 * 109.47027 * 65.00083 * 7 6 4 32 32 H 1.08998 * 109.47289 * 304.99963 * 7 6 4 33 33 H 0.97001 * 119.99997 * 185.00145 * 12 11 9 34 34 H 1.09002 * 117.49536 * 214.97162 * 17 8 7 35 35 H 1.08997 * 117.50197 * 359.97438 * 17 8 7 36 36 H 1.09000 * 117.49527 * 252.51141 * 18 17 8 37 37 H 1.08998 * 117.52198 * 107.47407 * 18 17 8 38 38 H 1.09005 * 110.66793 * 301.44625 * 19 2 1 39 39 H 1.09000 * 110.48551 * 322.42475 * 20 19 2 40 40 H 1.09006 * 110.48599 * 85.06367 * 20 19 2 41 41 H 1.09004 * 110.02781 * 264.32252 * 21 20 19 42 42 H 1.08997 * 110.03346 * 142.89919 * 21 20 19 43 43 H 1.08998 * 110.03578 * 240.71847 * 22 21 20 44 44 H 1.09004 * 110.07026 * 119.30487 * 22 21 20 45 45 H 1.08998 * 110.48619 * 217.71418 * 23 22 21 46 46 H 1.09001 * 110.60230 * 95.11996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7992 -1.6436 1.1213 6 7 1.6293 -0.3088 2.4522 7 6 2.2006 -0.9261 3.6517 8 6 1.4888 -0.3838 4.8927 9 6 -0.0115 -0.5249 4.8952 10 1 -0.6286 0.2761 5.2749 11 6 -0.5966 -1.6742 4.4075 12 7 0.1479 -2.6095 3.8593 13 14 -2.4468 -1.9027 4.5256 14 1 -3.0923 -1.3537 3.3062 15 1 -2.7603 -3.3496 4.6429 16 1 -2.9588 -1.1869 5.7217 17 6 2.2126 -0.5107 6.2347 18 6 2.0828 0.8574 5.5620 19 6 2.0400 -0.7213 -1.2493 20 6 3.5877 -0.6952 -1.3048 21 6 3.9155 -0.8700 -2.8020 22 6 2.6766 -0.3959 -3.5816 23 6 1.6392 0.0511 -2.5309 24 1 -0.3634 0.5892 0.8420 25 1 -0.3633 0.4347 -0.9312 26 1 -0.3633 -1.0238 0.0891 27 1 3.1264 1.4438 -0.0893 28 1 1.6057 1.9814 -0.8421 29 1 1.7514 1.9299 0.9312 30 1 0.9609 0.3890 2.5373 31 1 3.2633 -0.6908 3.7103 32 1 2.0701 -2.0071 3.6013 33 1 -0.2693 -3.3844 3.4514 34 1 1.6035 -0.6963 7.1194 35 1 3.1959 -0.9810 6.2337 36 1 2.9809 1.2872 5.1183 37 1 1.3883 1.5720 6.0036 38 1 1.6666 -1.7448 -1.2820 39 1 3.9664 0.2596 -0.9401 40 1 4.0041 -1.5186 -0.7243 41 1 4.1152 -1.9191 -3.0204 42 1 4.7798 -0.2617 -3.0685 43 1 2.2749 -1.2148 -4.1784 44 1 2.9389 0.4425 -4.2270 45 1 0.6335 -0.2279 -2.8451 46 1 1.7013 1.1265 -2.3640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431183676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:24 Heat of formation + Delta-G solvation = -51.663147 kcal Electronic energy + Delta-G solvation = -23449.593983 eV Core-core repulsion = 20338.256975 eV Total energy + Delta-G solvation = -3111.337008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -41.33139 -39.11984 -38.13977 -35.45911 -34.39577 -34.05242 -29.62492 -28.73098 -28.14714 -27.79487 -27.11935 -24.15149 -22.96856 -21.38033 -21.12726 -20.93500 -19.51994 -18.32733 -17.37626 -16.95427 -16.71656 -16.36642 -15.88491 -15.77142 -15.34298 -14.89893 -14.57282 -14.44753 -14.23837 -13.84901 -13.49488 -13.35120 -13.09302 -12.90136 -12.86266 -12.70470 -12.58909 -12.30581 -12.27935 -12.03650 -11.91418 -11.84163 -11.74559 -11.53010 -11.31865 -11.21113 -11.04568 -10.88807 -10.65903 -10.33146 -10.04594 -9.54016 -7.94114 -6.19233 1.40200 1.45174 1.52605 2.02305 2.41154 2.62407 3.10348 3.60679 3.65326 3.76834 3.84994 4.09585 4.16746 4.22150 4.28464 4.44011 4.55073 4.62601 4.65622 4.76311 4.76558 4.79592 4.82865 4.85111 4.88470 4.95588 4.97006 5.00761 5.07311 5.14236 5.17812 5.20422 5.21453 5.30502 5.33666 5.42697 5.50525 5.53321 5.61290 5.64454 5.65357 5.99542 6.01444 6.38936 6.81186 7.08353 7.46917 7.68996 8.93575 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.005446 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.488796 B = 5140.228730 C = 5782.043124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.138 4.138 4 C 0.506 3.494 5 O -0.597 6.597 6 N -0.682 5.682 7 C 0.172 3.828 8 C 0.009 3.991 9 C -0.501 4.501 10 H 0.059 0.941 11 C 0.036 3.964 12 N -0.891 5.891 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.294 1.294 16 H -0.269 1.269 17 C -0.201 4.201 18 C -0.182 4.182 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.400 0.600 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 9.207 -12.640 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.195 4.195 4 C 0.293 3.707 5 O -0.479 6.479 6 N -0.329 5.329 7 C 0.048 3.952 8 C 0.008 3.992 9 C -0.539 4.539 10 H 0.077 0.923 11 C -0.165 4.165 12 N -0.528 5.528 13 Si 0.772 3.228 14 H -0.197 1.197 15 H -0.221 1.221 16 H -0.194 1.194 17 C -0.240 4.240 18 C -0.219 4.219 19 C -0.083 4.083 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.235 0.765 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.347 8.348 -12.713 15.389 hybrid contribution -1.064 -0.690 0.777 1.488 sum 1.283 7.657 -11.936 14.239 Atomic orbital electron populations 1.21842 0.92286 1.01405 1.03785 1.20727 0.97204 0.97343 0.91716 1.21994 1.01625 0.92249 1.03673 1.21143 0.80671 0.83331 0.85521 1.90564 1.39166 1.30846 1.87335 1.45597 1.42516 1.39764 1.04980 1.20696 0.91138 0.99771 0.83599 1.19266 0.93735 0.96686 0.89492 1.20652 0.89748 1.01293 1.42188 0.92297 1.25575 1.01227 0.95251 0.94488 1.70037 1.35479 1.10285 1.36986 0.85750 0.81563 0.76747 0.78788 1.19746 1.22058 1.19350 1.22926 1.00882 1.01179 0.99012 1.22913 1.02260 0.90753 1.05977 1.21822 0.95694 0.97764 0.93065 1.22468 0.95461 1.01309 0.96498 1.22142 0.98844 1.00842 0.94251 1.22106 0.94777 1.01220 0.97557 1.22546 0.99069 1.00810 0.92883 0.92030 0.88681 0.94817 0.92129 0.88482 0.92113 0.76460 0.96998 0.90634 0.93581 0.90601 0.90917 0.89706 0.89620 0.93519 0.91409 0.93889 0.92935 0.90941 0.91922 0.90101 0.90992 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.17 71.98 0.59 -3.25 16 2 C -0.07 -2.02 0.47 -52.93 -0.02 -2.05 16 3 C -0.14 -3.26 7.77 71.98 0.56 -2.70 16 4 C 0.51 21.07 6.28 87.66 0.55 21.62 16 5 O -0.60 -29.64 14.06 -3.02 -0.04 -29.69 16 6 N -0.68 -29.25 5.13 -463.06 -2.37 -31.62 16 7 C 0.17 8.38 4.71 86.38 0.41 8.79 16 8 C 0.01 0.42 1.97 -52.93 -0.10 0.31 16 9 C -0.50 -25.26 8.41 25.60 0.22 -25.04 16 10 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 11 C 0.04 1.87 5.39 84.66 0.46 2.32 16 12 N -0.89 -49.40 10.48 21.45 0.22 -49.18 16 13 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 C -0.20 -8.75 9.96 30.59 0.30 -8.45 16 18 C -0.18 -7.21 9.92 30.60 0.30 -6.90 16 19 C -0.06 -1.86 1.88 -9.49 -0.02 -1.87 16 20 C -0.12 -3.52 5.28 31.67 0.17 -3.35 16 21 C -0.12 -2.78 6.80 31.32 0.21 -2.57 16 22 C -0.12 -2.20 6.80 31.32 0.21 -1.99 16 23 C -0.12 -2.32 5.25 31.68 0.17 -2.15 16 24 H 0.06 1.74 7.38 -2.39 -0.02 1.72 16 25 H 0.09 2.00 7.11 -2.39 -0.02 1.99 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 28 H 0.10 1.67 6.30 -2.39 -0.02 1.66 16 29 H 0.06 1.44 7.90 -2.39 -0.02 1.42 16 30 H 0.40 16.08 7.10 -92.71 -0.66 15.42 16 31 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.08 4.34 5.86 -2.39 -0.01 4.33 16 33 H 0.25 14.00 8.32 -92.71 -0.77 13.23 16 34 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.07 1.89 5.71 -2.39 -0.01 1.87 16 40 H 0.04 1.59 6.71 -2.38 -0.02 1.57 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.07 1.32 7.89 -2.39 -0.02 1.30 16 46 H 0.09 1.48 5.76 -2.39 -0.01 1.46 16 Total: -1.00 -61.55 348.86 4.13 -57.43 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.30 Total: 36.80 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.00 Total: -27.29 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.15 Total: -80.80 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -61.55 4.13 -57.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431183676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -61.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds