Wall clock time and date at job start Tue Mar 31 2020 00:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46858 * 125.00220 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99907 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46971 * 90.00441 * 15 13 11 17 17 H 1.48505 * 109.46977 * 209.99978 * 15 13 11 18 18 H 1.48493 * 109.47395 * 329.99873 * 15 13 11 19 19 C 1.52996 * 109.47253 * 59.99719 * 4 3 2 20 20 C 1.53000 * 109.47253 * 179.97438 * 19 4 3 21 21 C 1.52996 * 109.47166 * 300.00041 * 20 19 4 22 22 C 1.53002 * 109.47255 * 60.00105 * 21 20 19 23 23 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 24 24 H 1.08008 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00138 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47139 * 5.00786 * 3 2 1 28 28 H 1.08994 * 109.47046 * 245.00077 * 3 2 1 29 29 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 30 30 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 31 31 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 32 32 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 33 33 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 34 34 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 35 35 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 36 36 H 0.97003 * 120.00173 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47551 * 299.99874 * 19 4 3 38 38 H 1.09003 * 109.46851 * 60.00175 * 19 4 3 39 39 H 1.09004 * 109.47131 * 180.02562 * 20 19 4 40 40 H 1.09003 * 109.47049 * 60.00296 * 20 19 4 41 41 H 1.09003 * 109.47345 * 300.00074 * 21 20 19 42 42 H 1.09000 * 109.47665 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47738 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46969 * 59.99739 * 22 21 20 45 45 H 1.08994 * 109.47089 * 300.00072 * 23 4 3 46 46 H 1.09004 * 109.47066 * 59.99996 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.2639 1.1983 2.4693 6 8 2.3205 2.0756 3.3049 7 7 1.5068 0.1053 2.6901 8 6 0.7523 -0.0231 3.9393 9 6 -0.0166 -1.3458 3.9372 10 6 -0.8040 -1.4801 5.2422 11 6 -1.5608 -2.7832 5.2403 12 1 -1.4873 -3.4492 4.3934 13 6 -2.3473 -3.1253 6.3200 14 7 -2.4372 -2.3140 7.3512 15 14 -3.2848 -4.7409 6.3179 16 1 -2.4380 -5.8054 6.9137 17 1 -4.5282 -4.5927 7.1164 18 1 -3.6338 -5.1090 4.9223 19 6 4.0245 0.1730 1.0559 20 6 4.9964 0.2013 2.2372 21 6 5.7614 1.5263 2.2365 22 6 4.7719 2.6865 2.3623 23 6 3.8004 2.6579 1.1813 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9313 29 1 1.4614 -0.5964 2.0220 30 1 1.4416 -0.0052 4.7835 31 1 0.0499 0.8059 4.0264 32 1 -0.7058 -1.3641 3.0930 33 1 0.6862 -2.1744 3.8506 34 1 -0.1144 -1.4620 6.0861 35 1 -1.5067 -0.6515 5.3294 36 1 -2.9908 -2.5545 8.1106 37 1 3.4795 -0.7710 1.0559 38 1 4.5823 0.2705 0.1245 39 1 5.7016 -0.6250 2.1473 40 1 4.4389 0.1040 3.1688 41 1 6.3188 1.6236 1.3049 42 1 6.4535 1.5467 3.0783 43 1 5.3168 3.6305 2.3615 44 1 4.2145 2.5892 3.2940 45 1 4.3582 2.7550 0.2500 46 1 3.0958 3.4847 1.2707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448907751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:26 Heat of formation + Delta-G solvation = -58.374972 kcal Electronic energy + Delta-G solvation = -22774.783034 eV Core-core repulsion = 19663.154979 eV Total energy + Delta-G solvation = -3111.628054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.89148 -37.35658 -35.78435 -34.88959 -33.17935 -31.52326 -31.18936 -30.53206 -26.77322 -26.23445 -23.75078 -23.00180 -22.08276 -20.79500 -20.62095 -19.70704 -18.93633 -16.53174 -16.27481 -15.97337 -15.51294 -15.17196 -14.57609 -14.46134 -14.33934 -14.17371 -13.77454 -13.57347 -13.44516 -12.70309 -12.41090 -12.29534 -12.11216 -12.02761 -11.78709 -11.70942 -11.57789 -11.25956 -11.12652 -10.90874 -10.71633 -10.67924 -10.57097 -10.26549 -10.08997 -9.84278 -9.62657 -9.41349 -9.18924 -9.04504 -8.58456 -8.36895 -6.01493 -4.04540 2.12294 2.91612 3.30545 3.36901 3.39410 3.52194 4.39425 4.44219 4.57701 4.60510 4.87132 4.87826 5.05763 5.10916 5.17813 5.30584 5.34273 5.36739 5.42563 5.47011 5.52469 5.70364 5.72242 5.79010 5.82186 5.84151 5.88321 5.91639 6.08049 6.12775 6.19534 6.20456 6.24198 6.46783 6.49965 6.61202 6.63157 6.66361 6.90104 7.04509 7.64266 7.77403 7.85487 7.97472 8.38498 8.55061 9.02144 9.59572 11.09814 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.003690 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.948051 B = 7587.152950 C = 8044.126835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.179 4.179 3 C -0.080 4.080 4 C -0.073 4.073 5 C 0.522 3.478 6 O -0.543 6.543 7 N -0.722 5.722 8 C 0.115 3.885 9 C -0.119 4.119 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.090 4.090 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.876 6.864 -16.808 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C -0.118 4.118 4 C -0.076 4.076 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.375 5.375 8 C -0.007 4.007 9 C -0.157 4.157 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.144 4.144 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.172 4.172 23 C -0.128 4.128 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.235 0.765 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.812 7.502 -16.015 22.439 hybrid contribution -0.665 -1.317 -0.181 1.487 sum 13.147 6.184 -16.196 21.758 Atomic orbital electron populations 1.23984 0.95865 1.02437 0.98364 1.22923 0.96218 0.98403 1.02139 1.20779 0.97606 0.96080 0.97308 1.20875 0.95402 0.98090 0.93235 1.20325 0.79120 0.81823 0.87968 1.90604 1.63965 1.40533 1.47009 1.46521 1.47693 1.21806 1.21477 1.21601 0.94563 0.99559 0.85017 1.21862 0.98319 0.93579 1.01967 1.19022 0.94607 0.97150 0.90559 1.21202 1.27628 1.04269 1.02899 0.92698 1.25026 0.96787 0.97012 0.95608 1.69968 1.39900 1.36460 1.06951 0.86593 0.79437 0.83947 0.78006 1.20667 1.21205 1.19900 1.21636 0.96538 0.96889 0.99331 1.21582 0.98258 0.97702 0.98689 1.21525 0.97777 0.94875 1.01270 1.21796 0.97035 0.97447 1.00933 1.21325 0.97804 0.95066 0.98613 0.88512 0.87908 0.86852 0.90972 0.90030 0.76534 0.92042 0.91987 0.92826 0.92960 0.96349 0.96315 0.92942 0.91419 0.90910 0.91793 0.91731 0.92453 0.92263 0.92525 0.88797 0.91798 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 13.90 29.02 0.40 -1.31 16 2 C -0.18 -1.67 5.80 -36.02 -0.21 -1.88 16 3 C -0.08 -0.74 4.72 -27.88 -0.13 -0.87 16 4 C -0.07 -0.79 0.50 -155.66 -0.08 -0.87 16 5 C 0.52 7.70 4.93 -10.98 -0.05 7.65 16 6 O -0.54 -9.95 13.66 5.55 0.08 -9.87 16 7 N -0.72 -10.66 4.77 -60.29 -0.29 -10.95 16 8 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 9 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.11 -0.99 4.38 -26.73 -0.12 -1.11 16 20 C -0.12 -1.30 5.70 -26.73 -0.15 -1.45 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 22 C -0.13 -1.54 5.63 -26.75 -0.15 -1.69 16 23 C -0.09 -0.96 4.37 -26.76 -0.12 -1.07 16 24 H 0.10 0.99 7.84 -52.48 -0.41 0.58 16 25 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.11 0.93 6.68 -52.49 -0.35 0.58 16 27 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 5.08 4.89 -40.82 -0.20 4.88 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 0.61 5.98 -51.93 -0.31 0.30 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.83 7.22 -51.93 -0.37 0.46 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.38 5.51 -51.93 -0.29 1.09 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.21 352.89 -8.88 -40.08 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.22 Total: 2.37 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.48 Total: -17.27 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.45 Total: -37.11 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.21 -8.88 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.291 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds