Wall clock time and date at job start Tue Mar 31 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46858 * 125.00220 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99907 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00027 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46971 * 90.00441 * 15 13 11 17 17 H 1.48505 * 109.46977 * 209.99978 * 15 13 11 18 18 H 1.48493 * 109.47395 * 329.99873 * 15 13 11 19 19 C 1.52996 * 109.47253 * 59.99719 * 4 3 2 20 20 C 1.53000 * 109.47253 * 179.97438 * 19 4 3 21 21 C 1.52996 * 109.47166 * 300.00041 * 20 19 4 22 22 C 1.53002 * 109.47255 * 60.00105 * 21 20 19 23 23 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 24 24 H 1.08008 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00138 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47139 * 5.00786 * 3 2 1 28 28 H 1.08994 * 109.47046 * 245.00077 * 3 2 1 29 29 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 30 30 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 31 31 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 32 32 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 33 33 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 34 34 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 35 35 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 36 36 H 0.97003 * 120.00173 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47551 * 299.99874 * 19 4 3 38 38 H 1.09003 * 109.46851 * 60.00175 * 19 4 3 39 39 H 1.09004 * 109.47131 * 180.02562 * 20 19 4 40 40 H 1.09003 * 109.47049 * 60.00296 * 20 19 4 41 41 H 1.09003 * 109.47345 * 300.00074 * 21 20 19 42 42 H 1.09000 * 109.47665 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47738 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46969 * 59.99739 * 22 21 20 45 45 H 1.08994 * 109.47089 * 300.00072 * 23 4 3 46 46 H 1.09004 * 109.47066 * 59.99996 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.2639 1.1983 2.4693 6 8 2.3205 2.0756 3.3049 7 7 1.5068 0.1053 2.6901 8 6 0.7523 -0.0231 3.9393 9 6 -0.0166 -1.3458 3.9372 10 6 -0.8040 -1.4801 5.2422 11 6 -1.5608 -2.7832 5.2403 12 1 -1.4873 -3.4492 4.3934 13 6 -2.3473 -3.1253 6.3200 14 7 -2.4372 -2.3140 7.3512 15 14 -3.2848 -4.7409 6.3179 16 1 -2.4380 -5.8054 6.9137 17 1 -4.5282 -4.5927 7.1164 18 1 -3.6338 -5.1090 4.9223 19 6 4.0245 0.1730 1.0559 20 6 4.9964 0.2013 2.2372 21 6 5.7614 1.5263 2.2365 22 6 4.7719 2.6865 2.3623 23 6 3.8004 2.6579 1.1813 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9313 29 1 1.4614 -0.5964 2.0220 30 1 1.4416 -0.0052 4.7835 31 1 0.0499 0.8059 4.0264 32 1 -0.7058 -1.3641 3.0930 33 1 0.6862 -2.1744 3.8506 34 1 -0.1144 -1.4620 6.0861 35 1 -1.5067 -0.6515 5.3294 36 1 -2.9908 -2.5545 8.1106 37 1 3.4795 -0.7710 1.0559 38 1 4.5823 0.2705 0.1245 39 1 5.7016 -0.6250 2.1473 40 1 4.4389 0.1040 3.1688 41 1 6.3188 1.6236 1.3049 42 1 6.4535 1.5467 3.0783 43 1 5.3168 3.6305 2.3615 44 1 4.2145 2.5892 3.2940 45 1 4.3582 2.7550 0.2500 46 1 3.0958 3.4847 1.2707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448907751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:21 Heat of formation + Delta-G solvation = -75.842134 kcal Electronic energy + Delta-G solvation = -22775.540467 eV Core-core repulsion = 19663.154979 eV Total energy + Delta-G solvation = -3112.385487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -41.92577 -38.46199 -37.06661 -36.08857 -34.98335 -32.97303 -32.21422 -31.52992 -28.61747 -26.98206 -25.42474 -23.88123 -23.30651 -22.31424 -21.72789 -20.48593 -20.14187 -18.53051 -17.38918 -17.11685 -16.65025 -16.46131 -16.38712 -15.62856 -15.46522 -15.12013 -14.76637 -14.52123 -14.48397 -14.22232 -13.77535 -13.68421 -13.38337 -13.18841 -12.94726 -12.88508 -12.75491 -12.56034 -12.38708 -12.36098 -12.01249 -11.93642 -11.72307 -11.63477 -11.47936 -11.22599 -11.05910 -10.88476 -10.56530 -10.42362 -10.19606 -9.87880 -8.20171 -6.32026 1.35380 1.41091 1.42631 1.53621 1.75739 2.30129 2.43104 3.13565 3.57423 3.69410 3.78611 4.01755 4.10957 4.15862 4.18870 4.27763 4.30308 4.39297 4.51063 4.52719 4.56789 4.65605 4.74754 4.78196 4.91792 4.95512 4.97624 5.00827 5.08775 5.10360 5.14620 5.16028 5.27459 5.31618 5.38813 5.42051 5.46835 5.53139 5.68255 5.70748 5.75479 5.82400 5.87374 6.21019 6.66179 6.85286 7.36383 7.37965 8.92079 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.003690 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.948051 B = 7587.152950 C = 8044.126835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.175 4.175 3 C -0.078 4.078 4 C -0.064 4.064 5 C 0.516 3.484 6 O -0.584 6.584 7 N -0.713 5.713 8 C 0.129 3.871 9 C -0.099 4.099 10 C 0.025 3.975 11 C -0.540 4.540 12 H 0.067 0.933 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.090 4.090 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.409 0.591 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.065 0.935 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.028 0.972 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.073 5.263 -19.887 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.193 4.193 3 C -0.115 4.115 4 C -0.067 4.067 5 C 0.304 3.696 6 O -0.465 6.465 7 N -0.367 5.367 8 C 0.005 3.995 9 C -0.137 4.137 10 C -0.013 4.013 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.183 1.183 19 C -0.142 4.142 20 C -0.165 4.165 21 C -0.151 4.151 22 C -0.175 4.175 23 C -0.128 4.128 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.150 0.850 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.249 0.751 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.008 0.992 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.020 5.888 -19.133 25.027 hybrid contribution -1.005 -0.738 0.830 1.498 sum 14.015 5.149 -18.303 23.621 Atomic orbital electron populations 1.24048 0.96464 1.02294 0.99544 1.23120 0.96008 0.99195 1.00944 1.20814 0.97303 0.95662 0.97724 1.20902 0.95575 0.99200 0.91041 1.21232 0.78539 0.80719 0.89090 1.90603 1.65128 1.41928 1.48816 1.46360 1.47362 1.22595 1.20406 1.21168 0.93987 0.98037 0.86318 1.21567 0.98204 0.94772 0.99152 1.18929 0.94002 0.95704 0.92631 1.21663 1.27755 1.05058 1.03346 0.91499 1.26032 0.97874 1.01030 0.95120 1.70119 1.40906 1.38778 1.07799 0.85406 0.77749 0.78948 0.78700 1.19788 1.21037 1.18311 1.21707 0.96075 0.96215 1.00160 1.21606 0.98636 0.98626 0.97619 1.21515 0.97297 0.93777 1.02484 1.21753 0.97408 0.98772 0.99538 1.21367 0.97500 0.94282 0.99612 0.89312 0.87672 0.85018 0.92122 0.86821 0.75057 0.93839 0.93757 0.91468 0.91644 0.99181 0.99119 0.92816 0.90715 0.87573 0.90072 0.95317 0.89769 0.92674 0.91716 0.92885 0.88364 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.48 13.90 67.78 0.94 -2.54 16 2 C -0.17 -2.79 5.80 25.65 0.15 -2.64 16 3 C -0.08 -1.21 4.72 29.85 0.14 -1.07 16 4 C -0.06 -1.25 0.50 -52.93 -0.03 -1.28 16 5 C 0.52 15.32 4.93 87.66 0.43 15.75 16 6 O -0.58 -22.51 13.66 -3.04 -0.04 -22.55 16 7 N -0.71 -20.97 4.77 -463.06 -2.21 -23.18 16 8 C 0.13 4.84 5.67 86.38 0.49 5.33 16 9 C -0.10 -3.96 5.27 30.59 0.16 -3.80 16 10 C 0.03 1.33 4.97 29.85 0.15 1.48 16 11 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 15 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 19 C -0.10 -1.58 4.38 30.59 0.13 -1.44 16 20 C -0.13 -2.40 5.70 30.59 0.17 -2.22 16 21 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 22 C -0.14 -3.06 5.63 30.58 0.17 -2.88 16 23 C -0.09 -1.73 4.37 30.58 0.13 -1.60 16 24 H 0.09 1.77 7.84 -2.91 -0.02 1.75 16 25 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 26 H 0.13 1.64 6.68 -2.91 -0.02 1.62 16 27 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.41 9.85 4.89 -92.71 -0.45 9.39 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.07 1.05 5.98 -2.39 -0.01 1.03 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.03 0.74 7.22 -2.39 -0.02 0.72 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.64 5.51 -2.39 -0.01 1.63 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.13 8.10 -2.38 -0.02 1.12 16 Total: -1.00 -70.61 352.89 4.46 -66.15 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.47 Total: 19.68 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.93 Total: -28.64 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.93 Total: -80.60 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.55 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.61 4.46 -66.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.692 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds