Wall clock time and date at job start Tue Mar 31 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47031 * 120.00177 * 2 1 3 5 5 C 1.53003 * 109.47051 * 175.00227 * 4 2 1 6 6 H 1.09003 * 115.55990 * 29.30692 * 5 4 2 7 7 C 1.52996 * 117.49958 * 243.62177 * 5 4 2 8 8 C 1.53000 * 117.50138 * 174.99729 * 5 4 2 9 9 H 1.09003 * 117.51845 * 0.02562 * 8 5 4 10 10 C 1.50692 * 117.50159 * 214.97858 * 8 5 4 11 11 O 1.21287 * 119.99946 * 359.97438 * 10 8 5 12 12 N 1.34782 * 120.00168 * 179.97438 * 10 8 5 13 13 C 1.46497 * 119.99739 * 179.97438 * 12 10 8 14 14 C 1.50708 * 109.47141 * 90.00032 * 13 12 10 15 15 H 1.07991 * 119.99789 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.46493 * 120.00018 * 359.97438 * 12 10 8 23 23 C 1.52994 * 109.47416 * 270.00109 * 22 12 10 24 24 C 1.52996 * 117.50090 * 243.74635 * 23 22 12 25 25 C 1.52998 * 117.50035 * 175.08500 * 23 22 12 26 26 H 1.09007 * 109.47032 * 299.99630 * 1 2 3 27 27 H 1.08990 * 109.47190 * 60.00036 * 1 2 3 28 28 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47120 * 239.99850 * 2 1 3 30 30 H 1.09001 * 109.46699 * 300.00320 * 3 2 1 31 31 H 1.09005 * 109.46456 * 59.99956 * 3 2 1 32 32 H 1.08995 * 109.47058 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47581 * 54.99869 * 4 2 1 34 34 H 1.09003 * 109.47374 * 294.99570 * 4 2 1 35 35 H 1.08993 * 117.50300 * 145.01887 * 7 5 4 36 36 H 1.09003 * 117.52010 * 359.97438 * 7 5 4 37 37 H 1.08994 * 109.47995 * 330.00007 * 13 12 10 38 38 H 1.09000 * 109.47072 * 209.99965 * 13 12 10 39 39 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 40 40 H 1.09010 * 109.46973 * 30.00158 * 22 12 10 41 41 H 1.09002 * 109.47083 * 149.99825 * 22 12 10 42 42 H 1.09009 * 115.55022 * 29.42016 * 23 22 12 43 43 H 1.08997 * 117.50145 * 0.02562 * 24 23 22 44 44 H 1.09007 * 117.49735 * 145.02111 * 24 23 22 45 45 H 1.09004 * 117.50118 * 214.97816 * 25 23 22 46 46 H 1.08999 * 117.50192 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 4.0721 -0.0355 0.6421 7 6 4.1697 -2.2344 1.1153 8 6 4.2803 -1.4196 2.4056 9 1 3.6649 -1.7292 3.2504 10 6 5.6322 -0.8552 2.7584 11 8 6.1133 0.0320 2.0857 12 7 6.3068 -1.3362 3.8215 13 6 7.6214 -0.7878 4.1641 14 6 7.4508 0.3693 5.1144 15 1 6.4622 0.6662 5.4317 16 6 8.5570 1.0483 5.5795 17 7 8.4082 2.0578 6.4092 18 14 10.2671 0.5343 5.0312 19 1 10.8040 -0.4819 5.9717 20 1 11.1609 1.7201 5.0207 21 1 10.1961 -0.0441 3.6653 22 6 5.7255 -2.4074 4.6343 23 6 4.8923 -1.7966 5.7627 24 6 5.3527 -2.0526 7.1991 25 6 4.1050 -2.7552 6.6583 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 5.0749 -2.3623 0.5218 36 1 3.4817 -3.0799 1.1116 37 1 8.1189 -0.4432 3.2576 38 1 8.2254 -1.5614 4.6383 39 1 9.1864 2.5356 6.7361 40 1 5.0877 -3.0326 4.0092 41 1 6.5243 -3.0147 5.0602 42 1 4.4420 -0.8283 5.5435 43 1 6.2495 -2.6559 7.3403 44 1 5.2050 -1.2529 7.9251 45 1 3.1370 -2.4176 7.0286 46 1 4.1803 -3.8212 6.4433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448908788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:09 Heat of formation + Delta-G solvation = -4.983752 kcal Electronic energy + Delta-G solvation = -22448.268051 eV Core-core repulsion = 19338.955213 eV Total energy + Delta-G solvation = -3109.312837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66694 -37.67463 -36.84948 -34.95177 -34.29513 -32.40574 -28.78596 -27.51952 -27.15778 -26.17523 -24.03091 -21.98516 -21.76452 -20.93699 -20.44883 -19.79262 -18.33838 -16.83968 -16.67976 -15.76696 -15.24616 -14.85250 -14.61993 -14.40600 -14.03064 -13.82670 -13.39914 -13.30688 -12.76230 -12.51951 -12.32137 -12.26145 -12.18540 -11.85910 -11.64774 -11.63619 -11.40070 -11.15012 -11.02699 -10.94267 -10.83157 -10.57333 -10.53575 -10.11742 -10.02105 -9.96823 -9.77982 -9.54762 -9.41644 -8.94532 -8.53672 -7.68970 -6.03052 -4.00060 3.12674 3.29085 3.37420 3.41904 3.77200 4.09338 4.23374 4.44054 4.62015 4.82623 4.86818 5.02035 5.08606 5.12582 5.20376 5.26751 5.30571 5.38524 5.43410 5.53844 5.56271 5.66304 5.73161 5.74566 5.78963 5.84506 5.86423 5.87451 5.89357 6.00041 6.06127 6.11783 6.15640 6.24818 6.33724 6.37232 6.48426 6.54659 6.65741 6.72792 7.01394 7.40186 7.66717 8.30213 8.53468 8.99838 9.05711 9.57896 11.10467 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.004815 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.400232 B = 5814.092768 C = 6674.097350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.084 4.084 5 C -0.122 4.122 6 H 0.119 0.881 7 C -0.155 4.155 8 C -0.183 4.183 9 H 0.120 0.880 10 C 0.538 3.462 11 O -0.541 6.541 12 N -0.588 5.588 13 C 0.216 3.784 14 C -0.517 4.517 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.871 3.129 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.148 3.852 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.191 4.191 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -10.992 -7.761 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.121 4.121 5 C -0.140 4.140 6 H 0.137 0.863 7 C -0.192 4.192 8 C -0.204 4.204 9 H 0.138 0.862 10 C 0.325 3.675 11 O -0.418 6.418 12 N -0.318 5.318 13 C 0.096 3.904 14 C -0.556 4.556 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.024 3.976 23 C -0.174 4.174 24 C -0.197 4.197 25 C -0.229 4.229 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.099 -10.379 -8.007 18.531 hybrid contribution 0.996 -0.099 0.206 1.022 sum -12.103 -10.478 -7.801 17.808 Atomic orbital electron populations 1.21846 0.95504 1.01420 1.01668 1.21061 0.95179 0.96616 0.98301 1.21918 1.01944 0.95629 1.01410 1.21259 0.92343 1.00360 0.98138 1.22461 0.94737 0.97133 0.99713 0.86315 1.23039 1.03140 0.94755 0.98288 1.22407 0.97556 1.06626 0.93842 0.86202 1.19432 0.85159 0.82245 0.80667 1.90653 1.69058 1.30123 1.51983 1.47792 1.20478 1.36627 1.26870 1.19676 0.79511 0.94365 0.96878 1.21304 0.95428 1.13245 1.25599 0.90572 1.24833 0.98768 0.94717 0.94704 1.69893 1.30197 1.21069 1.32655 0.86924 0.85003 0.78477 0.79788 1.20230 1.21048 1.18946 1.21012 0.96329 0.88929 0.91367 1.22731 1.02154 1.00048 0.92474 1.22870 0.97168 1.02581 0.97114 1.22978 0.96293 0.97862 1.05746 0.92715 0.92868 0.92905 0.91194 0.93108 0.92667 0.91862 0.91871 0.91396 0.88653 0.88371 0.94276 0.95911 0.92731 0.90944 0.90789 0.87720 0.88994 0.88978 0.89376 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.92 2.92 -90.62 -0.26 -1.19 16 3 C -0.15 -1.66 9.01 37.16 0.33 -1.33 16 4 C -0.08 -0.91 4.96 -26.73 -0.13 -1.04 16 5 C -0.12 -1.66 5.04 -90.62 -0.46 -2.11 16 6 H 0.12 1.87 5.91 -51.93 -0.31 1.57 16 7 C -0.15 -1.92 9.88 -26.73 -0.26 -2.18 16 8 C -0.18 -2.79 4.52 -91.78 -0.41 -3.20 16 9 H 0.12 1.64 7.01 -51.93 -0.36 1.28 16 10 C 0.54 11.17 7.46 -10.99 -0.08 11.09 16 11 O -0.54 -13.55 15.84 5.55 0.09 -13.46 16 12 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 13 C 0.22 5.34 4.27 -5.19 -0.02 5.32 16 14 C -0.52 -14.81 9.94 -34.44 -0.34 -15.16 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 18 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 22 C 0.15 2.38 5.36 -4.05 -0.02 2.36 16 23 C -0.15 -2.51 5.73 -90.63 -0.52 -3.03 16 24 C -0.16 -2.53 10.18 -26.70 -0.27 -2.80 16 25 C -0.19 -2.44 10.25 -26.70 -0.27 -2.71 16 26 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 33 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 37 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 38 H 0.02 0.53 7.32 -51.93 -0.38 0.15 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.07 0.96 6.64 -51.92 -0.34 0.61 16 41 H 0.07 1.14 7.63 -51.93 -0.40 0.75 16 42 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 43 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -32.89 370.06 -9.51 -42.40 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.37 Total: 2.98 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.49 Total: -14.88 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.34 Total: -39.71 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.89 -9.51 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448908788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.419 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds