Wall clock time and date at job start Tue Mar 31 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.09001 * 110.53286 * 307.61287 * 3 2 1 5 5 C 1.54969 * 110.52965 * 70.23815 * 3 2 1 6 6 C 1.54889 * 102.77557 * 156.57122 * 5 3 2 7 7 C 1.54267 * 104.19449 * 322.08667 * 6 5 3 8 8 C 1.53873 * 106.60195 * 23.60684 * 7 6 5 9 9 H 1.08992 * 110.03552 * 240.66751 * 8 7 6 10 10 C 1.50702 * 110.03247 * 119.28321 * 8 7 6 11 11 O 1.21282 * 120.00322 * 256.50983 * 10 8 7 12 12 N 1.34782 * 119.99847 * 76.50505 * 10 8 7 13 13 C 1.46501 * 119.99922 * 4.47802 * 12 10 8 14 14 C 1.50707 * 109.46806 * 269.99764 * 13 12 10 15 15 H 1.08001 * 119.99971 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99822 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00259 * 359.72124 * 16 14 13 18 18 Si 1.86802 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47090 * 119.99643 * 18 16 14 21 21 H 1.48500 * 109.47169 * 239.99796 * 18 16 14 22 22 C 1.46499 * 119.99893 * 184.47110 * 12 10 8 23 23 C 1.53002 * 109.47065 * 265.66636 * 22 12 10 24 24 C 1.52999 * 117.50016 * 244.47535 * 23 22 12 25 25 C 1.53005 * 117.49367 * 175.81523 * 23 22 12 26 26 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47092 * 299.99850 * 1 2 3 28 28 H 1.08993 * 109.46813 * 60.00563 * 1 2 3 29 29 H 1.09000 * 109.47575 * 239.99565 * 2 1 3 30 30 H 1.09005 * 109.47113 * 119.99688 * 2 1 3 31 31 H 1.09004 * 110.71682 * 38.25627 * 5 3 2 32 32 H 1.08997 * 110.92244 * 274.97939 * 5 3 2 33 33 H 1.08993 * 110.48398 * 203.40769 * 6 5 3 34 34 H 1.09001 * 110.59861 * 80.82037 * 6 5 3 35 35 H 1.09005 * 110.02854 * 264.32210 * 7 6 5 36 36 H 1.08997 * 110.03150 * 142.89686 * 7 6 5 37 37 H 1.08995 * 109.47067 * 149.99770 * 13 12 10 38 38 H 1.09001 * 109.47127 * 29.99421 * 13 12 10 39 39 H 0.96999 * 119.99789 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.47274 * 25.67250 * 22 12 10 41 41 H 1.09005 * 109.46841 * 145.66786 * 22 12 10 42 42 H 1.08998 * 115.55153 * 30.15037 * 23 22 12 43 43 H 1.09003 * 117.49670 * 359.97438 * 24 23 22 44 44 H 1.08993 * 117.50315 * 145.02115 * 24 23 22 45 45 H 1.09001 * 117.49253 * 214.97633 * 25 23 22 46 46 H 1.08996 * 117.49920 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7586 2.1184 1.3658 6 6 2.8170 3.2483 1.4133 7 6 4.0712 2.6190 0.7725 8 6 3.5772 1.4716 -0.1259 9 1 3.9976 0.5247 0.2128 10 6 3.9731 1.7293 -1.5569 11 8 3.1469 2.1214 -2.3535 12 7 5.2455 1.5242 -1.9516 13 6 6.2203 0.9580 -1.0160 14 6 6.8997 2.0727 -0.2629 15 1 6.6324 3.1000 -0.4616 16 6 7.8633 1.7810 0.6791 17 7 8.1857 0.5297 0.9244 18 14 8.7060 3.1626 1.6121 19 1 8.1636 4.4685 1.1590 20 1 8.4563 3.0015 3.0671 21 1 10.1673 3.1159 1.3524 22 6 5.6535 1.8672 -3.3161 23 6 5.5474 0.6278 -4.2069 24 6 6.8428 0.0738 -4.8037 25 6 5.8379 0.8033 -5.6989 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.9093 1.4133 2.1833 32 1 0.7505 2.5319 1.3951 33 1 3.0198 3.5379 2.4443 34 1 2.4843 4.1099 0.8344 35 1 4.7307 2.2288 1.5478 36 1 4.5973 3.3623 0.1735 37 1 6.9654 0.3865 -1.5693 38 1 5.7091 0.3022 -0.3112 39 1 8.8633 0.3245 1.5874 40 1 5.0022 2.6504 -3.7041 41 1 6.6840 2.2223 -3.3088 42 1 4.7761 -0.0890 -3.9253 43 1 7.7704 0.5925 -4.5619 44 1 6.9236 -1.0074 -4.9149 45 1 5.2580 0.2015 -6.3986 46 1 6.1049 1.8016 -6.0456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448917504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:50 Heat of formation + Delta-G solvation = -42.590635 kcal Electronic energy + Delta-G solvation = -23290.676154 eV Core-core repulsion = 20179.732559 eV Total energy + Delta-G solvation = -3110.943594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74617 -37.61359 -36.46995 -34.66210 -32.80462 -32.44493 -29.29544 -27.62384 -27.12799 -25.90962 -22.99969 -22.49989 -22.05518 -20.92932 -20.09927 -19.52392 -17.98839 -16.43694 -16.24028 -15.89037 -15.00322 -14.92086 -14.48468 -14.33183 -14.16410 -13.64155 -13.26805 -12.79405 -12.67005 -12.51403 -12.33236 -12.00066 -11.72815 -11.50764 -11.27440 -11.24642 -11.17103 -10.93973 -10.86759 -10.71183 -10.57673 -10.33959 -10.20638 -10.17155 -10.05574 -10.01589 -9.91234 -9.62043 -9.48301 -8.83854 -8.50514 -7.67412 -6.16324 -4.21861 3.20989 3.30313 3.33550 3.49471 3.89170 4.22186 4.35302 4.93302 5.05346 5.08177 5.16509 5.17141 5.25782 5.34533 5.44609 5.54521 5.58188 5.70931 5.83193 5.87168 5.95851 6.01306 6.01636 6.06067 6.08852 6.17325 6.19876 6.20110 6.26025 6.29735 6.36894 6.39331 6.42542 6.51477 6.55066 6.61980 6.81497 6.84765 6.98796 7.01509 7.25315 7.60465 7.79249 8.09037 8.41328 8.82846 9.10311 9.44676 10.90482 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.008182 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.679103 B = 3421.399574 C = 5460.326451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.083 4.083 4 H 0.091 0.909 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.098 4.098 9 H 0.094 0.906 10 C 0.521 3.479 11 O -0.575 6.575 12 N -0.593 5.593 13 C 0.239 3.761 14 C -0.528 4.528 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.150 3.850 23 C -0.155 4.155 24 C -0.178 4.178 25 C -0.182 4.182 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -0.249 -2.725 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.101 4.101 4 H 0.109 0.891 5 C -0.153 4.153 6 C -0.165 4.165 7 C -0.133 4.133 8 C -0.119 4.119 9 H 0.112 0.888 10 C 0.310 3.690 11 O -0.457 6.457 12 N -0.322 5.322 13 C 0.119 3.881 14 C -0.566 4.566 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 C 0.026 3.974 23 C -0.174 4.174 24 C -0.215 4.215 25 C -0.220 4.220 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.490 -0.168 -3.013 9.011 hybrid contribution 0.863 0.521 0.593 1.170 sum -7.627 0.353 -2.419 8.010 Atomic orbital electron populations 1.21747 0.96235 1.00900 1.01630 1.21540 0.95494 0.96576 1.01654 1.22037 0.94003 0.95993 0.98110 0.89063 1.22543 0.98228 0.97524 0.97054 1.22417 0.96033 0.97848 1.00200 1.21965 0.96385 0.96456 0.98497 1.21842 0.95745 1.01530 0.92819 0.88823 1.20525 0.81854 0.76704 0.89888 1.90550 1.50750 1.49093 1.55274 1.48182 1.10232 1.61651 1.12163 1.19426 0.86958 0.94145 0.87591 1.21503 1.20842 0.93381 1.20911 0.92045 1.24896 0.96548 0.95465 0.96811 1.69936 1.32020 1.17235 1.33807 0.86562 0.79429 0.82466 0.79792 1.19653 1.20847 1.20976 1.20823 1.00497 0.94364 0.81714 1.22751 0.99381 1.01097 0.94170 1.23023 0.94260 0.99896 1.04324 1.22899 1.03916 1.01795 0.93342 0.93342 0.92874 0.92865 0.92312 0.92144 0.91718 0.92186 0.92079 0.92224 0.90239 0.91161 0.94663 0.94493 0.92692 0.90678 0.90559 0.88247 0.88601 0.89328 0.89334 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.79 37.16 0.36 -1.42 16 2 C -0.12 -1.65 5.28 -26.73 -0.14 -1.79 16 3 C -0.08 -1.33 2.28 -88.92 -0.20 -1.53 16 4 H 0.09 1.63 6.76 -51.93 -0.35 1.28 16 5 C -0.12 -1.63 5.68 -24.70 -0.14 -1.77 16 6 C -0.13 -1.95 6.83 -25.07 -0.17 -2.12 16 7 C -0.10 -1.76 4.89 -25.61 -0.13 -1.89 16 8 C -0.10 -1.83 2.07 -90.66 -0.19 -2.02 16 9 H 0.09 1.81 6.18 -51.93 -0.32 1.49 16 10 C 0.52 10.91 6.65 -10.98 -0.07 10.84 16 11 O -0.58 -12.98 14.98 5.56 0.08 -12.90 16 12 N -0.59 -12.47 2.46 -175.05 -0.43 -12.90 16 13 C 0.24 5.56 4.91 -5.19 -0.03 5.54 16 14 C -0.53 -13.16 7.50 -34.44 -0.26 -13.42 16 15 H 0.06 1.57 7.10 -52.49 -0.37 1.20 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 18 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.15 2.83 5.70 -4.04 -0.02 2.81 16 23 C -0.15 -2.59 6.01 -90.62 -0.54 -3.14 16 24 C -0.18 -2.63 10.18 -26.69 -0.27 -2.90 16 25 C -0.18 -2.51 10.26 -26.69 -0.27 -2.78 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 31 H 0.06 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.56 8.04 -51.93 -0.42 1.15 16 36 H 0.07 1.44 6.59 -51.93 -0.34 1.10 16 37 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.04 0.90 6.11 -51.93 -0.32 0.58 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.07 1.44 7.36 -51.93 -0.38 1.06 16 41 H 0.08 1.44 7.84 -51.93 -0.41 1.03 16 42 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 43 H 0.10 1.43 8.03 -51.93 -0.42 1.01 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -27.13 360.37 -9.70 -36.83 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.33 Total: 5.72 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.17 Total: -14.00 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.31 Total: -36.25 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.13 -9.70 -36.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.759 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds