Wall clock time and date at job start Tue Mar 31 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47413 * 2 1 4 4 H 1.09001 * 110.53286 * 307.61287 * 3 2 1 5 5 C 1.54969 * 110.52965 * 70.23815 * 3 2 1 6 6 C 1.54889 * 102.77557 * 156.57122 * 5 3 2 7 7 C 1.54267 * 104.19449 * 322.08667 * 6 5 3 8 8 C 1.53873 * 106.60195 * 23.60684 * 7 6 5 9 9 H 1.08992 * 110.03552 * 240.66751 * 8 7 6 10 10 C 1.50702 * 110.03247 * 119.28321 * 8 7 6 11 11 O 1.21282 * 120.00322 * 256.50983 * 10 8 7 12 12 N 1.34782 * 119.99847 * 76.50505 * 10 8 7 13 13 C 1.46501 * 119.99922 * 4.47802 * 12 10 8 14 14 C 1.50707 * 109.46806 * 269.99764 * 13 12 10 15 15 H 1.08001 * 119.99971 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99822 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00259 * 359.72124 * 16 14 13 18 18 Si 1.86802 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47090 * 119.99643 * 18 16 14 21 21 H 1.48500 * 109.47169 * 239.99796 * 18 16 14 22 22 C 1.46499 * 119.99893 * 184.47110 * 12 10 8 23 23 C 1.53002 * 109.47065 * 265.66636 * 22 12 10 24 24 C 1.52999 * 117.50016 * 244.47535 * 23 22 12 25 25 C 1.53005 * 117.49367 * 175.81523 * 23 22 12 26 26 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47092 * 299.99850 * 1 2 3 28 28 H 1.08993 * 109.46813 * 60.00563 * 1 2 3 29 29 H 1.09000 * 109.47575 * 239.99565 * 2 1 3 30 30 H 1.09005 * 109.47113 * 119.99688 * 2 1 3 31 31 H 1.09004 * 110.71682 * 38.25627 * 5 3 2 32 32 H 1.08997 * 110.92244 * 274.97939 * 5 3 2 33 33 H 1.08993 * 110.48398 * 203.40769 * 6 5 3 34 34 H 1.09001 * 110.59861 * 80.82037 * 6 5 3 35 35 H 1.09005 * 110.02854 * 264.32210 * 7 6 5 36 36 H 1.08997 * 110.03150 * 142.89686 * 7 6 5 37 37 H 1.08995 * 109.47067 * 149.99770 * 13 12 10 38 38 H 1.09001 * 109.47127 * 29.99421 * 13 12 10 39 39 H 0.96999 * 119.99789 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.47274 * 25.67250 * 22 12 10 41 41 H 1.09005 * 109.46841 * 145.66786 * 22 12 10 42 42 H 1.08998 * 115.55153 * 30.15037 * 23 22 12 43 43 H 1.09003 * 117.49670 * 359.97438 * 24 23 22 44 44 H 1.08993 * 117.50315 * 145.02115 * 24 23 22 45 45 H 1.09001 * 117.49253 * 214.97633 * 25 23 22 46 46 H 1.08996 * 117.49920 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7586 2.1184 1.3658 6 6 2.8170 3.2483 1.4133 7 6 4.0712 2.6190 0.7725 8 6 3.5772 1.4716 -0.1259 9 1 3.9976 0.5247 0.2128 10 6 3.9731 1.7293 -1.5569 11 8 3.1469 2.1214 -2.3535 12 7 5.2455 1.5242 -1.9516 13 6 6.2203 0.9580 -1.0160 14 6 6.8997 2.0727 -0.2629 15 1 6.6324 3.1000 -0.4616 16 6 7.8633 1.7810 0.6791 17 7 8.1857 0.5297 0.9244 18 14 8.7060 3.1626 1.6121 19 1 8.1636 4.4685 1.1590 20 1 8.4563 3.0015 3.0671 21 1 10.1673 3.1159 1.3524 22 6 5.6535 1.8672 -3.3161 23 6 5.5474 0.6278 -4.2069 24 6 6.8428 0.0738 -4.8037 25 6 5.8379 0.8033 -5.6989 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.9093 1.4133 2.1833 32 1 0.7505 2.5319 1.3951 33 1 3.0198 3.5379 2.4443 34 1 2.4843 4.1099 0.8344 35 1 4.7307 2.2288 1.5478 36 1 4.5973 3.3623 0.1735 37 1 6.9654 0.3865 -1.5693 38 1 5.7091 0.3022 -0.3112 39 1 8.8633 0.3245 1.5874 40 1 5.0022 2.6504 -3.7041 41 1 6.6840 2.2223 -3.3088 42 1 4.7761 -0.0890 -3.9253 43 1 7.7704 0.5925 -4.5619 44 1 6.9236 -1.0074 -4.9149 45 1 5.2580 0.2015 -6.3986 46 1 6.1049 1.8016 -6.0456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448917504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:49 Heat of formation + Delta-G solvation = -53.919570 kcal Electronic energy + Delta-G solvation = -23291.167413 eV Core-core repulsion = 20179.732559 eV Total energy + Delta-G solvation = -3111.434854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34367 -38.97287 -37.88544 -36.42307 -34.39082 -33.99162 -30.73799 -29.42771 -28.38895 -27.50120 -24.88426 -23.73679 -23.23041 -22.32277 -21.45990 -20.84522 -19.65880 -18.37980 -17.88983 -17.48605 -16.55632 -16.28835 -16.21217 -15.70272 -15.35264 -15.02468 -14.73362 -14.31649 -14.14256 -13.98262 -13.88475 -13.51386 -13.35294 -12.88558 -12.79524 -12.68660 -12.63585 -12.47358 -12.36339 -12.20451 -12.02896 -11.79603 -11.68837 -11.52513 -11.43033 -11.33913 -11.27858 -11.23176 -10.84372 -10.64650 -10.39684 -9.44890 -8.16812 -6.28513 1.39384 1.43605 1.53008 1.79150 2.28349 2.45486 2.93894 3.13819 3.60290 3.72974 3.76920 3.86610 3.98886 4.08773 4.17502 4.29034 4.37110 4.41356 4.50782 4.58196 4.70252 4.74442 4.75520 4.78002 4.80099 4.82724 4.88796 4.95314 4.99438 5.03185 5.12405 5.17923 5.23234 5.24504 5.25054 5.28212 5.30478 5.38121 5.46164 5.52007 5.65181 5.71038 5.88876 6.09603 6.60467 6.85304 7.33906 7.45356 8.89486 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.008182 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.679103 B = 3421.399574 C = 5460.326451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.106 4.106 6 C -0.122 4.122 7 C -0.092 4.092 8 C -0.099 4.099 9 H 0.082 0.918 10 C 0.516 3.484 11 O -0.593 6.593 12 N -0.597 5.597 13 C 0.258 3.742 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.025 3.975 17 N -0.921 5.921 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.281 1.281 22 C 0.150 3.850 23 C -0.181 4.181 24 C -0.174 4.174 25 C -0.155 4.155 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.017 0.983 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 0.146 -2.317 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.143 4.143 6 C -0.160 4.160 7 C -0.130 4.130 8 C -0.120 4.120 9 H 0.100 0.900 10 C 0.306 3.694 11 O -0.476 6.476 12 N -0.326 5.326 13 C 0.137 3.863 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.175 4.175 17 N -0.560 5.560 18 Si 0.773 3.227 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.207 1.207 22 C 0.026 3.974 23 C -0.200 4.200 24 C -0.211 4.211 25 C -0.193 4.193 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.381 0.231 -2.619 9.743 hybrid contribution 1.165 0.389 0.404 1.293 sum -8.216 0.620 -2.215 8.532 Atomic orbital electron populations 1.21705 0.94074 1.02060 1.02117 1.21527 0.97362 0.95137 1.01134 1.22001 0.91538 0.97231 0.98928 0.90893 1.22529 0.99033 0.96979 0.95804 1.22405 0.94556 0.98151 1.00885 1.21878 0.97667 0.95788 0.97691 1.21903 0.97969 1.00893 0.91202 0.89980 1.20944 0.81500 0.76167 0.90760 1.90526 1.51024 1.50018 1.56030 1.48203 1.10062 1.61496 1.12832 1.19032 0.86587 0.93427 0.87249 1.21569 1.20827 0.93151 1.20984 0.92939 1.25530 0.97102 0.97316 0.97538 1.70023 1.32680 1.18805 1.34516 0.85663 0.78353 0.79927 0.78736 1.19520 1.20271 1.20714 1.20883 0.99943 0.95455 0.81069 1.22560 1.00719 1.00344 0.96369 1.23077 0.93351 1.00740 1.03927 1.23019 1.02294 1.02572 0.91375 0.91911 0.91316 0.93405 0.94209 0.91356 0.90483 0.89710 0.90212 0.92036 0.91835 0.93805 0.96463 0.95779 0.92506 0.91289 0.90920 0.89818 0.88888 0.88189 0.87353 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.79 71.98 0.70 -2.43 16 2 C -0.11 -3.17 5.28 30.59 0.16 -3.00 16 3 C -0.08 -2.46 2.28 -9.69 -0.02 -2.48 16 4 H 0.07 2.60 6.76 -2.39 -0.02 2.58 16 5 C -0.11 -2.73 5.68 31.91 0.18 -2.55 16 6 C -0.12 -3.56 6.83 31.67 0.22 -3.35 16 7 C -0.09 -3.46 4.89 31.32 0.15 -3.30 16 8 C -0.10 -3.76 2.07 -10.82 -0.02 -3.78 16 9 H 0.08 3.30 6.18 -2.39 -0.01 3.28 16 10 C 0.52 22.38 6.65 87.66 0.58 22.96 16 11 O -0.59 -27.49 14.98 -3.04 -0.05 -27.54 16 12 N -0.60 -26.13 2.46 -826.13 -2.03 -28.16 16 13 C 0.26 12.49 4.91 85.64 0.42 12.91 16 14 C -0.53 -26.90 7.50 25.60 0.19 -26.71 16 15 H 0.05 2.75 7.10 -2.91 -0.02 2.73 16 16 C 0.03 1.30 5.46 84.65 0.46 1.76 16 17 N -0.92 -50.30 13.29 21.45 0.28 -50.01 16 18 Si 0.95 41.46 29.54 68.60 2.03 43.48 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 C 0.15 5.82 5.70 86.38 0.49 6.32 16 23 C -0.18 -6.11 6.01 -10.79 -0.06 -6.17 16 24 C -0.17 -5.01 10.18 30.62 0.31 -4.70 16 25 C -0.16 -4.03 10.26 30.62 0.31 -3.71 16 26 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.07 1.30 7.56 -2.39 -0.02 1.29 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.78 8.02 -2.38 -0.02 1.76 16 31 H 0.08 1.83 7.97 -2.39 -0.02 1.81 16 32 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 2.55 8.04 -2.38 -0.02 2.53 16 36 H 0.04 1.84 6.59 -2.39 -0.02 1.83 16 37 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 38 H 0.02 1.23 6.11 -2.39 -0.01 1.22 16 39 H 0.27 13.80 8.31 -92.71 -0.77 13.02 16 40 H 0.07 2.73 7.36 -2.39 -0.02 2.71 16 41 H 0.07 2.82 7.84 -2.38 -0.02 2.80 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 44 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -58.61 360.37 5.24 -53.37 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.92 Total: 27.10 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.08 Total: -18.24 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.74 Total: -78.17 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -58.61 5.24 -53.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.551 kcal (2) G-P(sol) polarization free energy of solvation -58.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds