Wall clock time and date at job start Tue Mar 31 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 H 1.09000 * 110.01640 * 55.62934 * 3 2 1 5 5 C 1.54274 * 110.03064 * 294.24135 * 3 2 1 6 6 C 1.54889 * 104.19322 * 217.10187 * 5 3 2 7 7 C 1.54896 * 102.74999 * 37.94272 * 6 5 3 8 8 C 1.53876 * 110.03591 * 177.07271 * 3 2 1 9 9 H 1.08995 * 110.02913 * 238.57032 * 8 3 2 10 10 C 1.50700 * 110.02653 * 0.02562 * 8 3 2 11 11 O 1.21285 * 120.00695 * 74.35709 * 10 8 3 12 12 N 1.34782 * 119.99864 * 254.35223 * 10 8 3 13 13 C 1.46496 * 120.00407 * 184.86791 * 12 10 8 14 14 C 1.50696 * 109.47314 * 89.99612 * 13 12 10 15 15 H 1.08001 * 120.00300 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00223 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99505 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99911 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47403 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47201 * 119.99970 * 18 16 14 21 21 H 1.48510 * 109.46693 * 239.99761 * 18 16 14 22 22 C 1.46503 * 119.99879 * 4.86569 * 12 10 8 23 23 C 1.52996 * 109.47014 * 84.58160 * 22 12 10 24 24 C 1.53000 * 117.49779 * 243.61877 * 23 22 12 25 25 C 1.52994 * 60.00473 * 252.51345 * 24 23 22 26 26 H 1.09002 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46827 * 300.00086 * 1 2 3 28 28 H 1.08999 * 109.47257 * 60.00186 * 1 2 3 29 29 H 1.09000 * 109.46827 * 239.99914 * 2 1 3 30 30 H 1.09000 * 109.47037 * 120.00566 * 2 1 3 31 31 H 1.08997 * 110.48390 * 335.78340 * 5 3 2 32 32 H 1.08996 * 110.48263 * 98.29442 * 5 3 2 33 33 H 1.08996 * 110.75508 * 156.25685 * 6 5 3 34 34 H 1.09002 * 110.75672 * 279.44492 * 6 5 3 35 35 H 1.09001 * 110.48375 * 80.73015 * 7 6 5 36 36 H 1.08992 * 110.48945 * 203.24278 * 7 6 5 37 37 H 1.08998 * 109.47524 * 209.99824 * 13 12 10 38 38 H 1.09008 * 109.46808 * 330.00002 * 13 12 10 39 39 H 0.97006 * 119.99413 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47066 * 204.58828 * 22 12 10 41 41 H 1.09003 * 109.47061 * 324.57983 * 22 12 10 42 42 H 1.08996 * 115.55232 * 29.33140 * 23 22 12 43 43 H 1.09000 * 117.50091 * 0.02562 * 24 23 22 44 44 H 1.09005 * 117.49740 * 145.02195 * 24 23 22 45 45 H 1.09002 * 117.50255 * 252.51444 * 25 24 23 46 46 H 1.09003 * 117.50162 * 107.48754 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6194 1.9869 0.8453 5 6 1.6552 2.1390 -1.3216 6 6 2.8730 3.0398 -1.6448 7 6 4.0725 2.1636 -1.2054 8 6 3.5770 1.4581 0.0738 9 1 3.9028 2.0107 0.9550 10 6 4.1057 0.0478 0.1227 11 8 4.1024 -0.6363 -0.8788 12 7 4.5825 -0.4534 1.2795 13 6 5.1940 -1.7844 1.3043 14 6 6.6726 -1.6630 1.0401 15 1 7.1130 -0.6915 0.8711 16 6 7.4634 -2.7922 1.0142 17 7 6.9270 -3.9754 1.2196 18 14 9.2964 -2.6415 0.6874 19 1 9.6481 -1.2125 0.4892 20 1 10.0518 -3.1815 1.8462 21 1 9.6463 -3.4110 -0.5336 22 6 4.4893 0.3329 2.5121 23 6 3.1136 0.1233 3.1479 24 6 2.1931 1.3405 3.2574 25 6 2.8593 0.7701 4.5110 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5049 1.4028 -2.1112 32 1 0.7571 2.7419 -1.1875 33 1 2.9221 3.2546 -2.7123 34 1 2.8341 3.9637 -1.0678 35 1 4.3125 1.4314 -1.9763 36 1 4.9404 2.7862 -0.9884 37 1 5.0358 -2.2388 2.2824 38 1 4.7376 -2.4083 0.5357 39 1 7.4833 -4.7699 1.2010 40 1 5.2641 0.0110 3.2079 41 1 4.6253 1.3893 2.2803 42 1 2.6490 -0.8437 2.9552 43 1 2.5674 2.2905 2.8761 44 1 1.1226 1.1744 3.1365 45 1 2.2273 0.2288 5.2149 46 1 3.6722 1.3450 4.9548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448917505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:54 Heat of formation + Delta-G solvation = -33.174084 kcal Electronic energy + Delta-G solvation = -23694.729355 eV Core-core repulsion = 20584.194093 eV Total energy + Delta-G solvation = -3110.535262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13432 -37.48308 -36.80597 -34.29338 -32.92480 -32.50081 -29.43809 -27.57798 -27.39433 -25.91479 -23.27157 -22.46354 -22.31585 -20.85408 -20.46793 -19.80904 -17.77350 -16.62839 -16.41699 -15.74115 -15.22353 -14.87749 -14.63974 -14.42395 -14.15147 -13.77919 -13.52555 -13.04871 -12.83128 -12.46035 -12.17460 -12.10731 -11.65948 -11.61917 -11.40817 -11.22134 -11.17442 -10.91437 -10.86469 -10.81504 -10.61236 -10.57060 -10.48331 -10.34592 -10.23918 -10.12810 -9.93044 -9.74792 -9.54545 -8.65516 -8.41552 -7.57700 -6.02255 -4.06775 3.30441 3.37818 3.41312 3.51877 3.84369 4.11006 4.46409 4.70175 4.78870 4.84497 4.97643 5.07271 5.14286 5.31673 5.34562 5.40100 5.46751 5.47820 5.57494 5.70564 5.73018 5.75338 5.77109 5.80031 5.90275 5.93179 6.00922 6.04009 6.05840 6.10668 6.18915 6.21158 6.23157 6.34256 6.40710 6.48400 6.55502 6.61746 6.76252 7.14260 7.50362 7.62297 7.95475 8.27139 8.52119 8.94336 9.21111 9.58708 11.05707 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.005978 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.767800 B = 4682.377218 C = 5382.496646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.068 4.068 4 H 0.074 0.926 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.084 0.916 10 C 0.524 3.476 11 O -0.543 6.543 12 N -0.597 5.597 13 C 0.246 3.754 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.142 3.858 23 C -0.162 4.162 24 C -0.179 4.179 25 C -0.179 4.179 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 13.683 2.252 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.087 4.087 4 H 0.093 0.907 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.102 0.898 10 C 0.311 3.689 11 O -0.421 6.421 12 N -0.327 5.327 13 C 0.126 3.874 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.017 3.983 23 C -0.181 4.181 24 C -0.216 4.216 25 C -0.216 4.216 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.345 13.086 1.738 17.406 hybrid contribution 1.088 -0.054 0.075 1.092 sum -10.257 13.031 1.813 16.683 Atomic orbital electron populations 1.21758 0.96493 1.01125 1.01020 1.21896 0.95128 0.96077 1.03763 1.21614 0.92591 0.96618 0.97840 0.90746 1.22450 0.97291 0.98317 0.97437 1.22460 0.95067 0.97782 1.00628 1.22338 0.97309 0.98510 0.96897 1.22101 0.96521 0.95098 0.99909 0.89805 1.20072 0.77272 0.88183 0.83375 1.90624 1.56433 1.60779 1.34240 1.48200 1.58157 1.19933 1.06436 1.19258 0.92508 0.77634 0.97970 1.21493 0.92879 0.93307 1.48680 0.92497 1.24935 0.98849 0.95133 0.95201 1.69951 1.35718 0.97856 1.49840 0.86470 0.85112 0.78145 0.77864 1.19827 1.20983 1.20903 1.21025 0.94452 0.95463 0.87365 1.22918 0.98141 0.97687 0.99388 1.23025 0.98576 0.97820 1.02213 1.22915 1.03374 1.04312 0.91039 0.93172 0.93379 0.93017 0.90237 0.91518 0.91307 0.92106 0.91760 0.91879 0.89942 0.91881 0.95209 0.93859 0.92833 0.89608 0.91479 0.87585 0.88990 0.89236 0.89126 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.75 37.16 0.36 -1.41 16 2 C -0.13 -1.97 4.09 -26.73 -0.11 -2.08 16 3 C -0.07 -0.89 2.63 -89.50 -0.24 -1.13 16 4 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 5 C -0.12 -1.40 5.43 -25.07 -0.14 -1.54 16 6 C -0.12 -1.41 6.91 -24.73 -0.17 -1.58 16 7 C -0.11 -1.66 6.32 -25.07 -0.16 -1.82 16 8 C -0.11 -1.77 2.90 -90.65 -0.26 -2.03 16 9 H 0.08 1.17 5.41 -51.93 -0.28 0.89 16 10 C 0.52 10.76 4.52 -10.98 -0.05 10.71 16 11 O -0.54 -13.44 14.03 5.55 0.08 -13.36 16 12 N -0.60 -12.53 2.47 -175.06 -0.43 -12.96 16 13 C 0.25 6.43 5.17 -5.20 -0.03 6.40 16 14 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 18 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.14 2.32 5.45 -4.04 -0.02 2.30 16 23 C -0.16 -2.24 5.03 -90.62 -0.46 -2.70 16 24 C -0.18 -1.97 8.58 -26.73 -0.23 -2.20 16 25 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.57 7.44 -51.93 -0.39 0.19 16 29 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 30 H 0.07 1.11 5.92 -51.93 -0.31 0.80 16 31 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.44 7.13 -51.93 -0.37 1.07 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 38 H 0.04 1.29 7.36 -51.92 -0.38 0.90 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 41 H 0.07 0.96 5.60 -51.93 -0.29 0.67 16 42 H 0.11 1.67 7.73 -51.93 -0.40 1.26 16 43 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.48 353.12 -9.59 -41.07 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.09 Total: 1.94 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.19 Total: -12.96 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.30 Total: -38.99 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.48 -9.59 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.898 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds