Wall clock time and date at job start Tue Mar 31 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 H 1.09000 * 110.01640 * 55.62934 * 3 2 1 5 5 C 1.54274 * 110.03064 * 294.24135 * 3 2 1 6 6 C 1.54889 * 104.19322 * 217.10187 * 5 3 2 7 7 C 1.54896 * 102.74999 * 37.94272 * 6 5 3 8 8 C 1.53876 * 110.03591 * 177.07271 * 3 2 1 9 9 H 1.08995 * 110.02913 * 238.57032 * 8 3 2 10 10 C 1.50700 * 110.02653 * 0.02562 * 8 3 2 11 11 O 1.21285 * 120.00695 * 74.35709 * 10 8 3 12 12 N 1.34782 * 119.99864 * 254.35223 * 10 8 3 13 13 C 1.46496 * 120.00407 * 184.86791 * 12 10 8 14 14 C 1.50696 * 109.47314 * 89.99612 * 13 12 10 15 15 H 1.08001 * 120.00300 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00223 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99505 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99911 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47403 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47201 * 119.99970 * 18 16 14 21 21 H 1.48510 * 109.46693 * 239.99761 * 18 16 14 22 22 C 1.46503 * 119.99879 * 4.86569 * 12 10 8 23 23 C 1.52996 * 109.47014 * 84.58160 * 22 12 10 24 24 C 1.53000 * 117.49779 * 243.61877 * 23 22 12 25 25 C 1.52994 * 60.00473 * 252.51345 * 24 23 22 26 26 H 1.09002 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46827 * 300.00086 * 1 2 3 28 28 H 1.08999 * 109.47257 * 60.00186 * 1 2 3 29 29 H 1.09000 * 109.46827 * 239.99914 * 2 1 3 30 30 H 1.09000 * 109.47037 * 120.00566 * 2 1 3 31 31 H 1.08997 * 110.48390 * 335.78340 * 5 3 2 32 32 H 1.08996 * 110.48263 * 98.29442 * 5 3 2 33 33 H 1.08996 * 110.75508 * 156.25685 * 6 5 3 34 34 H 1.09002 * 110.75672 * 279.44492 * 6 5 3 35 35 H 1.09001 * 110.48375 * 80.73015 * 7 6 5 36 36 H 1.08992 * 110.48945 * 203.24278 * 7 6 5 37 37 H 1.08998 * 109.47524 * 209.99824 * 13 12 10 38 38 H 1.09008 * 109.46808 * 330.00002 * 13 12 10 39 39 H 0.97006 * 119.99413 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47066 * 204.58828 * 22 12 10 41 41 H 1.09003 * 109.47061 * 324.57983 * 22 12 10 42 42 H 1.08996 * 115.55232 * 29.33140 * 23 22 12 43 43 H 1.09000 * 117.50091 * 0.02562 * 24 23 22 44 44 H 1.09005 * 117.49740 * 145.02195 * 24 23 22 45 45 H 1.09002 * 117.50255 * 252.51444 * 25 24 23 46 46 H 1.09003 * 117.50162 * 107.48754 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6194 1.9869 0.8453 5 6 1.6552 2.1390 -1.3216 6 6 2.8730 3.0398 -1.6448 7 6 4.0725 2.1636 -1.2054 8 6 3.5770 1.4581 0.0738 9 1 3.9028 2.0107 0.9550 10 6 4.1057 0.0478 0.1227 11 8 4.1024 -0.6363 -0.8788 12 7 4.5825 -0.4534 1.2795 13 6 5.1940 -1.7844 1.3043 14 6 6.6726 -1.6630 1.0401 15 1 7.1130 -0.6915 0.8711 16 6 7.4634 -2.7922 1.0142 17 7 6.9270 -3.9754 1.2196 18 14 9.2964 -2.6415 0.6874 19 1 9.6481 -1.2125 0.4892 20 1 10.0518 -3.1815 1.8462 21 1 9.6463 -3.4110 -0.5336 22 6 4.4893 0.3329 2.5121 23 6 3.1136 0.1233 3.1479 24 6 2.1931 1.3405 3.2574 25 6 2.8593 0.7701 4.5110 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5049 1.4028 -2.1112 32 1 0.7571 2.7419 -1.1875 33 1 2.9221 3.2546 -2.7123 34 1 2.8341 3.9637 -1.0678 35 1 4.3125 1.4314 -1.9763 36 1 4.9404 2.7862 -0.9884 37 1 5.0358 -2.2388 2.2824 38 1 4.7376 -2.4083 0.5357 39 1 7.4833 -4.7699 1.2010 40 1 5.2641 0.0110 3.2079 41 1 4.6253 1.3893 2.2803 42 1 2.6490 -0.8437 2.9552 43 1 2.5674 2.2905 2.8761 44 1 1.1226 1.1744 3.1365 45 1 2.2273 0.2288 5.2149 46 1 3.6722 1.3450 4.9548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448917505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:53 Heat of formation + Delta-G solvation = -50.474312 kcal Electronic energy + Delta-G solvation = -23695.479549 eV Core-core repulsion = 20584.194093 eV Total energy + Delta-G solvation = -3111.285456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56475 -38.65326 -38.15645 -36.03622 -34.59190 -34.01536 -30.90446 -29.25017 -28.44133 -27.50077 -25.15297 -23.66843 -23.20620 -22.18534 -21.56498 -21.03431 -19.25913 -18.61051 -18.03371 -17.17927 -16.69437 -16.28262 -16.03740 -15.78812 -15.37733 -15.09919 -14.76204 -14.41540 -14.26701 -14.09105 -13.69771 -13.40651 -13.26668 -12.91811 -12.88562 -12.65300 -12.56117 -12.33541 -12.25916 -12.22532 -12.00959 -11.83599 -11.77600 -11.72432 -11.45462 -11.35714 -11.32062 -11.04945 -10.82131 -10.67249 -10.29687 -9.37181 -8.24398 -6.40048 1.33504 1.36044 1.48077 1.91881 2.29618 2.44830 3.02237 3.04494 3.53257 3.68547 3.75359 3.93909 4.03173 4.07810 4.20836 4.30154 4.33641 4.39609 4.48511 4.59235 4.66660 4.75168 4.76346 4.82447 4.85271 4.87660 4.88415 4.94441 5.00624 5.08475 5.10491 5.17692 5.21420 5.24803 5.27306 5.32237 5.36464 5.37650 5.46085 5.50914 5.56339 5.64125 5.87958 6.05408 6.69093 6.86785 7.27139 7.57978 8.82745 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.005978 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.767800 B = 4682.377218 C = 5382.496646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C -0.061 4.061 4 H 0.108 0.892 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.106 4.106 9 H 0.108 0.892 10 C 0.517 3.483 11 O -0.599 6.599 12 N -0.602 5.602 13 C 0.265 3.735 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.281 1.281 22 C 0.141 3.859 23 C -0.190 4.190 24 C -0.156 4.156 25 C -0.164 4.164 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.015 0.985 38 H -0.007 1.007 39 H 0.267 0.733 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 17.550 3.435 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.080 4.080 4 H 0.126 0.874 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.157 4.157 8 C -0.127 4.127 9 H 0.126 0.874 10 C 0.307 3.693 11 O -0.480 6.480 12 N -0.332 5.332 13 C 0.143 3.857 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.207 1.207 22 C 0.018 3.982 23 C -0.209 4.209 24 C -0.193 4.193 25 C -0.201 4.201 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.011 0.989 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.122 16.989 2.957 21.079 hybrid contribution 1.302 -1.342 -0.289 1.892 sum -10.820 15.647 2.668 19.210 Atomic orbital electron populations 1.21706 0.93836 1.01281 1.02843 1.21784 0.97430 0.96952 1.00437 1.21689 0.90602 0.95585 1.00121 0.87424 1.22466 0.98935 0.98182 0.95752 1.22450 0.92601 0.97984 1.01699 1.22387 0.99608 0.98318 0.95411 1.22190 0.98195 0.91006 1.01357 0.87400 1.21086 0.76098 0.90043 0.82082 1.90593 1.58538 1.62714 1.36190 1.48193 1.57772 1.18490 1.08738 1.18630 0.91831 0.80098 0.95106 1.21748 0.93923 0.93341 1.49027 0.92873 1.25900 1.04110 0.94633 0.94623 1.70078 1.37755 0.98708 1.50405 0.85349 0.78811 0.78478 0.78064 1.18974 1.19263 1.20737 1.21232 0.95869 0.95960 0.85105 1.22579 0.97487 0.98205 1.02665 1.23165 0.98666 0.96574 1.00870 1.23027 1.03597 1.03237 0.90251 0.94040 0.90914 0.91615 0.94787 0.93850 0.93430 0.88722 0.90956 0.88749 0.93931 0.90654 0.96736 0.98931 0.92426 0.91176 0.88609 0.90549 0.86981 0.87981 0.88312 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.75 71.98 0.70 -2.47 16 2 C -0.13 -3.92 4.09 30.59 0.13 -3.79 16 3 C -0.06 -1.48 2.63 -10.07 -0.03 -1.51 16 4 H 0.11 1.94 6.59 -2.39 -0.02 1.92 16 5 C -0.12 -2.42 5.43 31.67 0.17 -2.25 16 6 C -0.11 -2.17 6.91 31.89 0.22 -1.95 16 7 C -0.12 -3.39 6.32 31.67 0.20 -3.19 16 8 C -0.11 -3.17 2.90 -10.82 -0.03 -3.20 16 9 H 0.11 2.65 5.41 -2.39 -0.01 2.64 16 10 C 0.52 22.33 4.52 87.66 0.40 22.73 16 11 O -0.60 -32.29 14.03 -3.04 -0.04 -32.33 16 12 N -0.60 -26.72 2.47 -826.15 -2.04 -28.76 16 13 C 0.26 15.00 5.17 85.63 0.44 15.44 16 14 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 15 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 18 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 C 0.14 4.63 5.45 86.38 0.47 5.10 16 23 C -0.19 -5.14 5.03 -10.79 -0.05 -5.20 16 24 C -0.16 -2.83 8.58 30.59 0.26 -2.57 16 25 C -0.16 -3.20 10.25 30.60 0.31 -2.89 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.31 7.44 -2.39 -0.02 1.29 16 29 H 0.03 1.33 6.49 -2.39 -0.02 1.32 16 30 H 0.04 1.51 5.92 -2.39 -0.01 1.49 16 31 H 0.05 1.20 7.79 -2.39 -0.02 1.18 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.55 7.13 -2.39 -0.02 1.53 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.01 0.85 8.07 -2.39 -0.02 0.83 16 38 H -0.01 -0.49 7.36 -2.38 -0.02 -0.51 16 39 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 40 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 41 H 0.10 2.54 5.60 -2.39 -0.01 2.53 16 42 H 0.08 2.53 7.73 -2.39 -0.02 2.51 16 43 H 0.11 1.64 7.65 -2.39 -0.02 1.62 16 44 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -75.97 353.12 5.06 -70.91 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.93 Total: 16.83 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.90 Total: -17.00 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.75 Total: -86.44 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.04 Total: -32.33 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.97 5.06 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.436 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds