Wall clock time and date at job start Tue Mar 31 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 H 1.08995 * 110.06065 * 305.45232 * 3 2 1 5 5 C 1.54266 * 110.02990 * 66.87288 * 3 2 1 6 6 C 1.54887 * 104.19807 * 142.89364 * 5 3 2 7 7 C 1.54888 * 102.74991 * 322.05459 * 6 5 3 8 8 C 1.53879 * 110.03306 * 184.03090 * 3 2 1 9 9 H 1.09001 * 110.07277 * 121.40918 * 8 3 2 10 10 C 1.50705 * 110.02869 * 0.02562 * 8 3 2 11 11 O 1.21284 * 119.99869 * 268.55659 * 10 8 3 12 12 N 1.34770 * 120.00059 * 88.56397 * 10 8 3 13 13 C 1.46500 * 119.99972 * 184.78030 * 12 10 8 14 14 C 1.50702 * 109.47387 * 269.99790 * 13 12 10 15 15 H 1.07995 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00413 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99994 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47354 * 89.99843 * 18 16 14 20 20 H 1.48501 * 109.47448 * 209.99853 * 18 16 14 21 21 H 1.48509 * 109.47126 * 329.99781 * 18 16 14 22 22 C 1.46507 * 120.00384 * 4.78073 * 12 10 8 23 23 C 1.53001 * 109.46913 * 85.87496 * 22 12 10 24 24 C 1.53001 * 117.49603 * 246.15717 * 23 22 12 25 25 C 1.52997 * 59.99956 * 252.51275 * 24 23 22 26 26 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46937 * 299.99925 * 1 2 3 28 28 H 1.09002 * 109.46894 * 59.99332 * 1 2 3 29 29 H 1.08999 * 109.46937 * 240.00075 * 2 1 3 30 30 H 1.09002 * 109.46894 * 120.00668 * 2 1 3 31 31 H 1.08998 * 110.48991 * 24.21014 * 5 3 2 32 32 H 1.09000 * 110.59397 * 261.62396 * 5 3 2 33 33 H 1.09000 * 110.75765 * 203.73963 * 6 5 3 34 34 H 1.09001 * 110.75833 * 80.37257 * 6 5 3 35 35 H 1.08998 * 110.48588 * 279.26662 * 7 6 5 36 36 H 1.08996 * 110.60196 * 156.67535 * 7 6 5 37 37 H 1.08998 * 109.47085 * 29.99887 * 13 12 10 38 38 H 1.09007 * 109.47220 * 149.99462 * 13 12 10 39 39 H 0.96993 * 120.00491 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.47185 * 205.87794 * 22 12 10 41 41 H 1.08998 * 109.46645 * 325.87670 * 22 12 10 42 42 H 1.08999 * 115.55490 * 31.86617 * 23 22 12 43 43 H 1.08994 * 117.50163 * 0.02562 * 24 23 22 44 44 H 1.09006 * 117.49983 * 145.02191 * 24 23 22 45 45 H 1.09002 * 117.50195 * 252.50927 * 25 24 23 46 46 H 1.09001 * 117.50195 * 107.49427 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9929 -0.8340 5 6 1.6795 2.1304 1.3329 6 6 2.9030 3.0291 1.6397 7 6 4.0941 2.1560 1.1729 8 6 3.5754 1.4587 -0.1016 9 1 3.8859 2.0165 -0.9851 10 6 4.1030 0.0487 -0.1704 11 8 4.4097 -0.5344 0.8479 12 7 4.2343 -0.5642 -1.3635 13 6 4.6471 -1.9685 -1.4241 14 6 6.1501 -2.0474 -1.5020 15 1 6.7388 -1.1421 -1.5055 16 6 6.7735 -3.2755 -1.5676 17 7 8.0850 -3.3444 -1.6351 18 14 5.7551 -4.8414 -1.5608 19 1 5.4153 -5.2171 -2.9567 20 1 6.5347 -5.9363 -0.9293 21 1 4.5054 -4.6159 -0.7907 22 6 3.9642 0.1739 -2.5999 23 6 5.2261 0.9232 -3.0326 24 6 5.1848 2.4523 -3.0027 25 6 5.1649 1.7126 -4.3418 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.5435 1.3891 2.1203 32 1 0.7800 2.7358 1.2208 33 1 2.9716 3.2370 2.7075 34 1 2.8553 3.9554 1.0671 35 1 4.3482 1.4187 1.9345 36 1 4.9587 2.7783 0.9423 37 1 4.3019 -2.4876 -0.5300 38 1 4.2124 -2.4373 -2.3070 39 1 8.5235 -4.2083 -1.6816 40 1 3.6699 -0.5247 -3.3831 41 1 3.1586 0.8877 -2.4283 42 1 6.1698 0.4398 -2.7799 43 1 4.2589 2.9245 -2.6744 44 1 6.1015 2.9754 -2.7301 45 1 6.0685 1.7489 -4.9503 46 1 4.2258 1.6981 -4.8949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448917506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:57 Heat of formation + Delta-G solvation = -48.432753 kcal Electronic energy + Delta-G solvation = -23674.699182 eV Core-core repulsion = 20563.502255 eV Total energy + Delta-G solvation = -3111.196927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61202 -38.74487 -38.14887 -36.10866 -34.60742 -33.97855 -31.22679 -29.52069 -28.43898 -27.60774 -24.80268 -23.65781 -23.18990 -21.97105 -21.70364 -21.17822 -19.29410 -18.97929 -17.96190 -17.22642 -16.74901 -16.35527 -16.18303 -15.57275 -15.37316 -15.15308 -14.79568 -14.58991 -14.27993 -14.13769 -13.83864 -13.57510 -13.40101 -12.96381 -12.90254 -12.72885 -12.42876 -12.34798 -12.31426 -12.11400 -12.00971 -11.84675 -11.72227 -11.68050 -11.43817 -11.38320 -11.30287 -11.19354 -10.85141 -10.80221 -10.41745 -9.37285 -8.33644 -6.37018 1.27814 1.32691 1.43087 1.85408 2.29392 2.33473 2.97358 3.01442 3.51532 3.66989 3.69076 3.91689 4.04003 4.05454 4.20496 4.27606 4.33616 4.39262 4.46371 4.59608 4.64740 4.68250 4.69136 4.74238 4.81808 4.82875 4.84224 4.89244 4.93195 4.94888 5.07547 5.09027 5.18174 5.22211 5.25975 5.30484 5.32608 5.42313 5.43599 5.47172 5.49177 5.59145 5.69595 6.26532 6.64331 6.76980 7.23197 7.50758 8.83465 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.006543 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.692745 B = 4278.107042 C = 5000.264476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C -0.070 4.070 4 H 0.111 0.889 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.111 4.111 9 H 0.113 0.887 10 C 0.518 3.482 11 O -0.597 6.597 12 N -0.598 5.598 13 C 0.226 3.774 14 C -0.524 4.524 15 H 0.029 0.971 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.945 3.055 19 H -0.251 1.251 20 H -0.283 1.283 21 H -0.258 1.258 22 C 0.146 3.854 23 C -0.197 4.197 24 C -0.170 4.170 25 C -0.157 4.157 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.645 14.982 -2.487 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.088 4.088 4 H 0.129 0.871 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.159 4.159 8 C -0.132 4.132 9 H 0.131 0.869 10 C 0.308 3.692 11 O -0.478 6.478 12 N -0.327 5.327 13 C 0.104 3.896 14 C -0.563 4.563 15 H 0.047 0.953 16 C -0.189 4.189 17 N -0.588 5.588 18 Si 0.768 3.232 19 H -0.175 1.175 20 H -0.208 1.208 21 H -0.182 1.182 22 C 0.024 3.976 23 C -0.216 4.216 24 C -0.207 4.207 25 C -0.194 4.194 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.352 14.534 -1.995 22.722 hybrid contribution 1.159 -1.512 0.236 1.920 sum -16.192 13.022 -1.759 20.853 Atomic orbital electron populations 1.21697 0.93320 1.01645 1.02976 1.21820 0.97991 0.96593 1.00731 1.21775 0.90510 0.96007 1.00526 0.87076 1.22438 0.98874 0.98242 0.95500 1.22460 0.92746 0.98073 1.01577 1.22374 0.99298 0.98422 0.95774 1.22269 0.98061 0.91100 1.01815 0.86928 1.21113 0.76198 0.89466 0.82404 1.90605 1.52565 1.68407 1.36265 1.47953 1.66175 1.12144 1.06467 1.19289 0.93500 0.80367 0.96484 1.21555 0.91895 0.92965 1.49861 0.95315 1.25845 0.96011 1.02848 0.94195 1.70053 1.10172 1.26264 1.52344 0.85752 0.79179 0.78441 0.79848 1.17484 1.20836 1.18189 1.21271 0.95185 0.95643 0.85532 1.22730 0.99671 0.94723 1.04509 1.23158 1.03925 0.92488 1.01118 1.22987 1.04187 1.02226 0.90015 0.93548 0.91704 0.90754 0.92856 0.95108 0.93181 0.88529 0.90990 0.88913 0.93543 0.91440 0.96765 0.93780 0.92451 0.89632 0.87568 0.91771 0.86039 0.89588 0.89323 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.76 71.98 0.70 -1.98 16 2 C -0.13 -3.58 4.11 30.59 0.13 -3.46 16 3 C -0.07 -1.53 2.58 -10.07 -0.03 -1.56 16 4 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.11 -2.17 5.48 31.67 0.17 -1.99 16 6 C -0.11 -2.15 6.91 31.88 0.22 -1.93 16 7 C -0.12 -3.47 6.30 31.67 0.20 -3.27 16 8 C -0.11 -3.22 2.40 -10.81 -0.03 -3.25 16 9 H 0.11 2.78 4.15 -2.39 -0.01 2.77 16 10 C 0.52 21.65 4.57 87.66 0.40 22.05 16 11 O -0.60 -31.55 14.81 -3.04 -0.05 -31.60 16 12 N -0.60 -24.82 1.69 -826.14 -1.40 -26.22 16 13 C 0.23 11.39 4.23 85.63 0.36 11.76 16 14 C -0.52 -31.76 9.77 25.60 0.25 -31.51 16 15 H 0.03 1.95 7.03 -2.91 -0.02 1.93 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 18 Si 0.94 45.90 27.47 68.60 1.88 47.78 16 19 H -0.25 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 22 C 0.15 4.47 5.07 86.38 0.44 4.90 16 23 C -0.20 -6.28 5.83 -10.79 -0.06 -6.34 16 24 C -0.17 -3.93 9.05 30.59 0.28 -3.65 16 25 C -0.16 -3.61 10.25 30.59 0.31 -3.29 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.10 7.48 -2.39 -0.02 1.08 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.59 6.37 -2.39 -0.02 1.57 16 30 H 0.03 1.06 7.28 -2.39 -0.02 1.04 16 31 H 0.05 1.15 7.78 -2.39 -0.02 1.13 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.71 6.82 -2.39 -0.02 1.69 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.01 0.79 6.55 -2.39 -0.02 0.77 16 38 H 0.04 2.02 7.29 -2.38 -0.02 2.01 16 39 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 40 H 0.09 2.47 7.84 -2.39 -0.02 2.45 16 41 H 0.11 2.38 6.06 -2.39 -0.01 2.37 16 42 H 0.06 2.84 6.92 -2.39 -0.02 2.83 16 43 H 0.12 2.06 7.00 -2.39 -0.02 2.04 16 44 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.12 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -79.50 348.78 5.44 -74.07 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.88 Total: 19.80 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.81 Total: -22.54 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -1.10 Total: -87.50 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -79.50 5.44 -74.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.635 kcal (2) G-P(sol) polarization free energy of solvation -79.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds