Wall clock time and date at job start Tue Mar 31 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 H 1.08995 * 110.67499 * 56.78294 * 3 2 1 5 5 C 1.54890 * 110.75669 * 293.54634 * 3 2 1 6 6 C 1.54269 * 104.19460 * 203.56024 * 5 3 2 7 7 C 1.53873 * 106.60007 * 23.60915 * 6 5 3 8 8 C 1.54261 * 106.63918 * 359.97438 * 7 6 5 9 9 H 1.09002 * 110.49026 * 95.09429 * 8 7 6 10 10 C 1.50703 * 110.48779 * 217.73651 * 8 7 6 11 11 O 1.21275 * 120.00113 * 93.44571 * 10 8 7 12 12 N 1.34785 * 119.99965 * 273.45532 * 10 8 7 13 13 C 1.46495 * 119.99874 * 5.12974 * 12 10 8 14 14 C 1.50702 * 109.47150 * 90.00340 * 13 12 10 15 15 H 1.08002 * 119.99582 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00351 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00097 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99968 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47204 * 89.99587 * 18 16 14 20 20 H 1.48492 * 109.46897 * 209.99912 * 18 16 14 21 21 H 1.48503 * 109.46915 * 329.99722 * 18 16 14 22 22 C 1.46493 * 119.99923 * 185.13792 * 12 10 8 23 23 C 1.52994 * 109.47557 * 88.20213 * 22 12 10 24 24 C 1.52997 * 117.50199 * 245.40786 * 23 22 12 25 25 C 1.52997 * 60.00003 * 252.50667 * 24 23 22 26 26 H 1.08997 * 109.46600 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46633 * 300.00110 * 1 2 3 28 28 H 1.08994 * 109.46759 * 60.00043 * 1 2 3 29 29 H 1.09001 * 109.46952 * 240.00260 * 2 1 3 30 30 H 1.09007 * 109.47078 * 120.00161 * 2 1 3 31 31 H 1.08998 * 110.48791 * 84.88040 * 5 3 2 32 32 H 1.09001 * 110.59781 * 322.28891 * 5 3 2 33 33 H 1.08995 * 110.03206 * 264.32394 * 6 5 3 34 34 H 1.09000 * 110.03276 * 142.89348 * 6 5 3 35 35 H 1.09002 * 110.03376 * 119.28177 * 7 6 5 36 36 H 1.09001 * 110.03146 * 240.66540 * 7 6 5 37 37 H 1.08998 * 109.47272 * 210.00023 * 13 12 10 38 38 H 1.08998 * 109.47273 * 330.00814 * 13 12 10 39 39 H 0.96993 * 119.99737 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47061 * 208.20915 * 22 12 10 41 41 H 1.09004 * 109.47268 * 328.20591 * 22 12 10 42 42 H 1.09005 * 115.55033 * 31.11832 * 23 22 12 43 43 H 1.08993 * 117.49871 * 0.02562 * 24 23 22 44 44 H 1.09003 * 117.49780 * 145.02400 * 24 23 22 45 45 H 1.08998 * 117.50328 * 252.50484 * 25 24 23 46 46 H 1.08999 * 117.49965 * 107.48781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6416 1.9915 0.8531 5 6 1.6775 2.1529 -1.3278 6 6 2.7159 3.2876 -1.4455 7 6 3.9309 2.8608 -0.6033 8 6 3.5892 1.4818 -0.0022 9 1 3.9899 0.6834 -0.6267 10 6 4.1226 1.3721 1.4030 11 8 3.4129 1.6550 2.3449 12 7 5.3885 0.9598 1.6130 13 6 6.2811 0.7262 0.4751 14 6 7.0178 1.9988 0.1451 15 1 6.8393 2.8921 0.7253 16 6 7.9205 2.0225 -0.8968 17 7 8.5638 3.1330 -1.1844 18 14 8.2298 0.4773 -1.8999 19 1 7.2862 0.4339 -3.0458 20 1 9.6251 0.4879 -2.4078 21 1 8.0238 -0.7183 -1.0435 22 6 5.8718 0.7450 2.9792 23 6 5.5627 -0.6902 3.4099 24 6 4.5669 -0.8852 4.5550 25 6 6.0581 -1.1369 4.7868 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.6686 2.5626 -1.2781 32 1 1.7678 1.4645 -2.1681 33 1 2.2996 4.2166 -1.0561 34 1 3.0106 3.4176 -2.4868 35 1 4.8152 2.7835 -1.2359 36 1 4.1047 3.5831 0.1943 37 1 6.9989 -0.0533 0.7303 38 1 5.6946 0.4117 -0.3881 39 1 9.1985 3.1497 -1.9177 40 1 6.9485 0.9110 3.0140 41 1 5.3748 1.4418 3.6542 42 1 5.5623 -1.4312 2.6104 43 1 4.1317 0.0089 5.0012 44 1 3.9111 -1.7547 4.5090 45 1 6.3834 -2.1717 4.8933 46 1 6.6044 -0.4082 5.3858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448917507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:01 Heat of formation + Delta-G solvation = -37.953108 kcal Electronic energy + Delta-G solvation = -23352.404949 eV Core-core repulsion = 20241.662453 eV Total energy + Delta-G solvation = -3110.742496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.78736 -37.70943 -36.52279 -34.78574 -32.89352 -32.43334 -29.40380 -28.17926 -27.22410 -26.09056 -22.81082 -22.46449 -22.09824 -21.07771 -19.94633 -19.54508 -18.09342 -16.97946 -16.54795 -15.90103 -14.96636 -14.83356 -14.53561 -14.28432 -14.11397 -13.81247 -13.31654 -12.96374 -12.80205 -12.66082 -12.52170 -12.15528 -11.86263 -11.68002 -11.40983 -11.36090 -11.29359 -10.97413 -10.86677 -10.75699 -10.65417 -10.36576 -10.22392 -10.18832 -10.15024 -10.08303 -9.93001 -9.63519 -9.56167 -8.91644 -8.67979 -7.71441 -6.20406 -4.20582 3.16851 3.25202 3.26783 3.41332 3.78746 4.14005 4.27018 4.84056 4.98528 5.00403 5.09305 5.10490 5.19157 5.26920 5.37256 5.46234 5.50828 5.65927 5.74800 5.80903 5.83530 5.88081 5.93200 5.98726 6.02820 6.09465 6.11415 6.13324 6.19702 6.21313 6.31001 6.31720 6.33162 6.44269 6.47290 6.51740 6.60183 6.69600 6.75718 6.87161 7.00115 7.40170 7.46563 8.18459 8.44912 8.85224 9.01550 9.39410 10.92153 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.008402 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.305062 B = 3331.646400 C = 5165.894323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.077 4.077 4 H 0.088 0.912 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.102 4.102 9 H 0.091 0.909 10 C 0.529 3.471 11 O -0.567 6.567 12 N -0.590 5.590 13 C 0.207 3.793 14 C -0.533 4.533 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.891 5.891 18 Si 0.867 3.133 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.149 3.851 23 C -0.162 4.162 24 C -0.173 4.173 25 C -0.180 4.180 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.266 0.734 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -6.868 2.316 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.096 4.096 4 H 0.107 0.893 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.140 4.140 8 C -0.123 4.123 9 H 0.109 0.891 10 C 0.318 3.682 11 O -0.447 6.447 12 N -0.319 5.319 13 C 0.086 3.914 14 C -0.571 4.571 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.693 3.307 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.026 3.974 23 C -0.181 4.181 24 C -0.210 4.210 25 C -0.218 4.218 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.467 -6.632 2.665 12.675 hybrid contribution 0.564 -0.808 -0.719 1.220 sum -9.904 -7.440 1.946 12.539 Atomic orbital electron populations 1.21740 0.96116 1.00950 1.01685 1.21496 0.95599 0.96527 1.01636 1.22095 0.93375 0.95804 0.98325 0.89325 1.22407 0.98408 0.97435 0.97208 1.22147 0.95842 0.98075 1.00050 1.21979 0.98452 0.94101 0.99461 1.22119 0.95611 1.00433 0.94118 0.89131 1.20356 0.81320 0.75638 0.90871 1.90561 1.58329 1.51223 1.44604 1.47859 1.11716 1.65253 1.07073 1.19837 0.89414 0.97881 0.84255 1.21348 1.22963 0.96466 1.16347 0.90356 1.24843 0.95250 0.95758 0.96785 1.69889 1.26834 1.26383 1.29748 0.86995 0.78205 0.84295 0.81185 1.19841 1.20952 1.18932 1.20835 0.99862 0.92692 0.84025 1.22793 1.04247 0.99238 0.91817 1.22945 0.91920 1.02993 1.03190 1.22903 0.97392 1.01807 0.99697 0.93327 0.92822 0.92811 0.92318 0.92149 0.92068 0.91855 0.92272 0.91991 0.89209 0.91868 0.95081 0.95166 0.92438 0.89940 0.90694 0.88122 0.88657 0.89586 0.89207 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.76 37.16 0.36 -1.33 16 2 C -0.12 -1.57 5.45 -26.73 -0.15 -1.72 16 3 C -0.08 -1.19 2.16 -88.59 -0.19 -1.38 16 4 H 0.09 1.52 7.26 -51.93 -0.38 1.14 16 5 C -0.12 -1.58 5.47 -25.07 -0.14 -1.71 16 6 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 7 C -0.10 -1.88 5.89 -25.62 -0.15 -2.04 16 8 C -0.10 -1.83 1.87 -90.07 -0.17 -2.00 16 9 H 0.09 1.62 6.24 -51.93 -0.32 1.29 16 10 C 0.53 10.81 6.71 -10.98 -0.07 10.74 16 11 O -0.57 -12.53 15.35 5.56 0.09 -12.44 16 12 N -0.59 -12.07 2.46 -175.07 -0.43 -12.50 16 13 C 0.21 4.54 4.08 -5.20 -0.02 4.52 16 14 C -0.53 -13.69 8.78 -34.44 -0.30 -13.99 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 16 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -25.46 13.96 55.43 0.77 -24.68 16 18 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 22 C 0.15 2.76 5.71 -4.05 -0.02 2.73 16 23 C -0.16 -2.55 6.01 -90.63 -0.54 -3.10 16 24 C -0.17 -2.46 10.18 -26.73 -0.27 -2.74 16 25 C -0.18 -2.35 10.25 -26.73 -0.27 -2.62 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.57 7.40 -51.93 -0.38 0.18 16 29 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 32 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.85 7.41 -51.93 -0.38 1.47 16 36 H 0.06 1.28 7.83 -51.93 -0.41 0.87 16 37 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 38 H 0.03 0.64 5.29 -51.93 -0.27 0.37 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 41 H 0.07 1.43 7.15 -51.93 -0.37 1.06 16 42 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -28.29 360.15 -9.40 -37.69 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.38 Total: 6.31 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.21 Total: -14.73 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.34 Total: -37.19 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.29 -9.40 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448917507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.263 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds