Wall clock time and date at job start Tue Mar 31 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 H 1.09000 * 110.05418 * 309.05067 * 3 2 1 5 5 C 1.54268 * 110.03035 * 70.46188 * 3 2 1 6 6 C 1.54885 * 104.19425 * 142.89398 * 5 3 2 7 7 C 1.54887 * 102.75112 * 322.05966 * 6 5 3 8 8 C 1.53872 * 110.03097 * 187.62895 * 3 2 1 9 9 H 1.09002 * 110.02814 * 121.38457 * 8 3 2 10 10 C 1.50694 * 110.03340 * 0.02562 * 8 3 2 11 11 O 1.21291 * 119.99868 * 293.95988 * 10 8 3 12 12 N 1.34774 * 120.00166 * 113.96328 * 10 8 3 13 13 C 1.37100 * 119.99922 * 0.02562 * 12 10 8 14 14 H 1.07996 * 120.00294 * 124.51769 * 13 12 10 15 15 C 1.38946 * 119.99887 * 304.51370 * 13 12 10 16 16 N 1.31408 * 120.00093 * 338.09667 * 15 13 12 17 17 Si 1.86802 * 120.00108 * 158.09591 * 15 13 12 18 18 H 1.48497 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46937 * 119.99998 * 17 15 13 20 20 H 1.48491 * 109.47211 * 240.00123 * 17 15 13 21 21 C 1.46500 * 120.00107 * 179.97438 * 12 10 8 22 22 C 1.54887 * 110.75729 * 118.46956 * 21 12 10 23 23 C 1.54273 * 104.19422 * 156.25432 * 22 21 12 24 24 C 1.53868 * 106.59901 * 336.39243 * 23 22 21 25 25 C 1.54266 * 106.60296 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47347 * 59.99793 * 1 2 3 27 27 H 1.09005 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47434 * 299.99575 * 1 2 3 29 29 H 1.08998 * 109.47124 * 240.00503 * 2 1 3 30 30 H 1.08996 * 109.47347 * 120.00207 * 2 1 3 31 31 H 1.08993 * 110.48747 * 261.57536 * 5 3 2 32 32 H 1.08998 * 110.48591 * 24.08491 * 5 3 2 33 33 H 1.09004 * 110.75461 * 80.37120 * 6 5 3 34 34 H 1.08995 * 110.76170 * 203.55877 * 6 5 3 35 35 H 1.09001 * 110.48872 * 279.26068 * 7 6 5 36 36 H 1.09003 * 110.49268 * 156.61641 * 7 6 5 37 37 H 0.97003 * 120.00385 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.81851 * 355.13159 * 21 12 10 39 39 H 1.09002 * 110.48800 * 37.58174 * 22 21 12 40 40 H 1.08997 * 110.48640 * 274.93544 * 22 21 12 41 41 H 1.09001 * 110.02504 * 95.67579 * 23 22 21 42 42 H 1.08993 * 110.03108 * 217.10221 * 23 22 21 43 43 H 1.09006 * 110.03174 * 119.28291 * 24 23 22 44 44 H 1.09005 * 110.02966 * 240.71341 * 24 23 22 45 45 H 1.08990 * 110.48973 * 142.28877 * 25 24 23 46 46 H 1.09001 * 110.48247 * 264.93612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5564 2.0100 -0.7952 5 6 1.7591 2.1023 1.3659 6 6 2.9992 2.9952 1.6186 7 6 4.1601 2.1328 1.0640 8 6 3.5666 1.4619 -0.1919 9 1 3.8238 2.0380 -1.0808 10 6 4.0885 0.0542 -0.3213 11 8 4.0220 -0.7063 0.6213 12 7 4.6291 -0.3599 -1.4844 13 6 4.7047 0.4998 -2.5496 14 1 5.6570 0.6936 -3.0207 15 6 3.5561 1.1218 -3.0233 16 7 2.3760 0.6002 -2.7739 17 14 3.6893 2.6996 -4.0145 18 1 5.1187 3.0763 -4.1555 19 1 3.0980 2.4899 -5.3604 20 1 2.9570 3.7863 -3.3160 21 6 5.1370 -1.7283 -1.6100 22 6 4.3626 -2.5029 -2.7051 23 6 5.3381 -3.6146 -3.1437 24 6 6.7528 -3.1217 -2.7925 25 6 6.5878 -1.7274 -2.1533 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.8552 2.7095 1.3176 32 1 1.6673 1.3445 2.1439 33 1 2.9182 3.9332 1.0692 34 1 3.1291 3.1835 2.6843 35 1 4.4585 1.3800 1.7937 36 1 5.0085 2.7623 0.7953 37 1 1.5741 1.0342 -3.1049 38 1 5.0821 -2.2511 -0.6550 39 1 4.1297 -1.8470 -3.5440 40 1 3.4508 -2.9359 -2.2936 41 1 5.1196 -4.5368 -2.6052 42 1 5.2564 -3.7806 -4.2178 43 1 7.2209 -3.8048 -2.0836 44 1 7.3577 -3.0485 -3.6963 45 1 7.2996 -1.5944 -1.3388 46 1 6.7144 -0.9466 -2.9033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449950234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:05 Heat of formation + Delta-G solvation = -61.794929 kcal Electronic energy + Delta-G solvation = -24435.746522 eV Core-core repulsion = 21323.970167 eV Total energy + Delta-G solvation = -3111.776355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.50186 -37.56992 -35.79243 -34.11630 -32.27930 -31.32203 -28.60502 -27.92421 -26.83783 -26.61975 -24.70308 -21.96332 -20.95514 -19.76817 -19.66225 -19.38389 -18.19786 -16.22083 -15.87490 -15.26319 -14.94920 -14.46821 -14.38298 -13.97074 -13.64295 -13.30270 -12.90706 -12.55988 -12.42864 -12.30922 -11.84627 -11.67662 -11.59668 -11.35880 -11.05832 -10.74874 -10.67760 -10.61556 -10.46748 -10.39996 -10.35817 -10.26688 -10.14014 -9.99391 -9.79171 -9.74388 -9.57963 -9.49334 -9.34135 -8.67357 -8.07561 -7.17050 -6.31328 -4.13158 3.11001 3.23148 3.25332 4.06887 4.20416 4.84760 4.91115 5.35419 5.37741 5.38831 5.47964 5.50067 5.62458 5.95134 6.12359 6.15695 6.18282 6.21988 6.24602 6.25353 6.28821 6.33683 6.36447 6.41916 6.42870 6.50379 6.53447 6.56236 6.57138 6.59337 6.73788 6.75821 6.84823 6.89346 7.00122 7.04529 7.09623 7.17476 7.25307 7.36497 7.44179 7.52143 7.77046 8.12690 8.71913 9.01119 9.71430 10.13902 10.67297 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.008239 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.532011 B = 3397.449289 C = 3970.344187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.047 4.047 4 H 0.063 0.937 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.091 4.091 9 H 0.098 0.902 10 C 0.527 3.473 11 O -0.609 6.609 12 N -0.446 5.446 13 C -0.348 4.348 14 H 0.078 0.922 15 C 0.063 3.937 16 N -0.836 5.836 17 Si 0.891 3.109 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.134 3.866 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.129 4.129 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.268 0.732 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 0.559 1.334 1.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.067 4.067 4 H 0.082 0.918 5 C -0.159 4.159 6 C -0.159 4.159 7 C -0.152 4.152 8 C -0.112 4.112 9 H 0.116 0.884 10 C 0.318 3.682 11 O -0.495 6.495 12 N -0.165 5.165 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.146 4.146 16 N -0.470 5.470 17 Si 0.717 3.283 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.202 1.202 21 C 0.029 3.971 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.167 4.167 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.901 0.183 1.730 1.959 hybrid contribution -0.181 0.852 -0.814 1.192 sum 0.720 1.035 0.916 1.558 Atomic orbital electron populations 1.21723 0.98264 0.99817 0.99971 1.21928 0.93405 0.96433 1.04253 1.21279 0.93720 0.96805 0.94849 0.91816 1.22524 0.96643 0.98198 0.98531 1.22441 0.95928 0.98041 0.99519 1.22345 0.97014 0.98337 0.97483 1.21730 0.95298 0.95504 0.98708 0.88389 1.20099 0.77768 0.88735 0.81576 1.90464 1.61619 1.57305 1.40084 1.43276 1.54902 1.08348 1.09944 1.18998 0.93664 1.22801 1.12146 0.90409 1.25495 0.95359 0.98321 0.95413 1.69941 0.97868 1.36476 1.42681 0.86468 0.78972 0.83188 0.79701 1.19122 1.20799 1.20236 1.21878 0.91773 0.85945 0.97457 1.22490 0.96752 0.96165 1.00149 1.22089 0.95422 0.98507 1.00045 1.22037 0.96887 0.97108 0.99635 1.22593 0.97457 0.96624 1.00027 0.93529 0.94278 0.94531 0.87947 0.92132 0.93005 0.91956 0.92258 0.92526 0.91229 0.92538 0.92148 0.90330 0.89838 0.93023 0.92931 0.92710 0.92809 0.92655 0.93010 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.78 37.16 0.36 -2.24 16 2 C -0.12 -2.67 3.71 -26.73 -0.10 -2.77 16 3 C -0.05 -0.98 1.96 -89.50 -0.17 -1.16 16 4 H 0.06 1.37 7.70 -51.93 -0.40 0.97 16 5 C -0.12 -2.16 5.66 -25.07 -0.14 -2.30 16 6 C -0.12 -2.02 6.91 -24.74 -0.17 -2.19 16 7 C -0.11 -2.20 6.32 -25.07 -0.16 -2.35 16 8 C -0.09 -2.01 2.23 -90.66 -0.20 -2.22 16 9 H 0.10 2.27 4.74 -51.93 -0.25 2.03 16 10 C 0.53 12.86 4.19 -10.99 -0.05 12.82 16 11 O -0.61 -16.00 13.64 5.55 0.08 -15.92 16 12 N -0.45 -10.63 2.45 -105.61 -0.26 -10.89 16 13 C -0.35 -8.30 6.81 -14.93 -0.10 -8.40 16 14 H 0.08 1.86 6.77 -52.49 -0.36 1.51 16 15 C 0.06 1.48 3.22 -17.47 -0.06 1.42 16 16 N -0.84 -20.05 9.23 55.50 0.51 -19.54 16 17 Si 0.89 18.58 29.12 -169.99 -4.95 13.63 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 C 0.13 2.91 3.29 -65.92 -0.22 2.70 16 22 C -0.12 -2.39 6.40 -25.07 -0.16 -2.55 16 23 C -0.12 -2.02 6.80 -25.61 -0.17 -2.20 16 24 C -0.12 -1.88 6.80 -25.62 -0.17 -2.05 16 25 C -0.13 -2.41 6.33 -25.06 -0.16 -2.57 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.61 7.61 -51.93 -0.40 0.21 16 29 H 0.10 2.56 5.18 -51.93 -0.27 2.29 16 30 H 0.06 1.42 6.39 -51.93 -0.33 1.09 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.43 7.34 -51.93 -0.38 1.05 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 38 H 0.08 1.83 7.02 -51.93 -0.36 1.46 16 39 H 0.08 1.89 7.35 -51.93 -0.38 1.51 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -25.32 336.39 -9.29 -34.61 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.07 Total: 9.12 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.67 Total: -16.08 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.25 Total: -30.43 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.08 Total: -15.92 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.95 Total: 13.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.32 -9.29 -34.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.181 kcal (2) G-P(sol) polarization free energy of solvation -25.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds