Wall clock time and date at job start Tue Mar 31 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 H 1.09000 * 110.05418 * 309.05067 * 3 2 1 5 5 C 1.54268 * 110.03035 * 70.46188 * 3 2 1 6 6 C 1.54885 * 104.19425 * 142.89398 * 5 3 2 7 7 C 1.54887 * 102.75112 * 322.05966 * 6 5 3 8 8 C 1.53872 * 110.03097 * 187.62895 * 3 2 1 9 9 H 1.09002 * 110.02814 * 121.38457 * 8 3 2 10 10 C 1.50694 * 110.03340 * 0.02562 * 8 3 2 11 11 O 1.21291 * 119.99868 * 293.95988 * 10 8 3 12 12 N 1.34774 * 120.00166 * 113.96328 * 10 8 3 13 13 C 1.37100 * 119.99922 * 0.02562 * 12 10 8 14 14 H 1.07996 * 120.00294 * 124.51769 * 13 12 10 15 15 C 1.38946 * 119.99887 * 304.51370 * 13 12 10 16 16 N 1.31408 * 120.00093 * 338.09667 * 15 13 12 17 17 Si 1.86802 * 120.00108 * 158.09591 * 15 13 12 18 18 H 1.48497 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46937 * 119.99998 * 17 15 13 20 20 H 1.48491 * 109.47211 * 240.00123 * 17 15 13 21 21 C 1.46500 * 120.00107 * 179.97438 * 12 10 8 22 22 C 1.54887 * 110.75729 * 118.46956 * 21 12 10 23 23 C 1.54273 * 104.19422 * 156.25432 * 22 21 12 24 24 C 1.53868 * 106.59901 * 336.39243 * 23 22 21 25 25 C 1.54266 * 106.60296 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47347 * 59.99793 * 1 2 3 27 27 H 1.09005 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47434 * 299.99575 * 1 2 3 29 29 H 1.08998 * 109.47124 * 240.00503 * 2 1 3 30 30 H 1.08996 * 109.47347 * 120.00207 * 2 1 3 31 31 H 1.08993 * 110.48747 * 261.57536 * 5 3 2 32 32 H 1.08998 * 110.48591 * 24.08491 * 5 3 2 33 33 H 1.09004 * 110.75461 * 80.37120 * 6 5 3 34 34 H 1.08995 * 110.76170 * 203.55877 * 6 5 3 35 35 H 1.09001 * 110.48872 * 279.26068 * 7 6 5 36 36 H 1.09003 * 110.49268 * 156.61641 * 7 6 5 37 37 H 0.97003 * 120.00385 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.81851 * 355.13159 * 21 12 10 39 39 H 1.09002 * 110.48800 * 37.58174 * 22 21 12 40 40 H 1.08997 * 110.48640 * 274.93544 * 22 21 12 41 41 H 1.09001 * 110.02504 * 95.67579 * 23 22 21 42 42 H 1.08993 * 110.03108 * 217.10221 * 23 22 21 43 43 H 1.09006 * 110.03174 * 119.28291 * 24 23 22 44 44 H 1.09005 * 110.02966 * 240.71341 * 24 23 22 45 45 H 1.08990 * 110.48973 * 142.28877 * 25 24 23 46 46 H 1.09001 * 110.48247 * 264.93612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5564 2.0100 -0.7952 5 6 1.7591 2.1023 1.3659 6 6 2.9992 2.9952 1.6186 7 6 4.1601 2.1328 1.0640 8 6 3.5666 1.4619 -0.1919 9 1 3.8238 2.0380 -1.0808 10 6 4.0885 0.0542 -0.3213 11 8 4.0220 -0.7063 0.6213 12 7 4.6291 -0.3599 -1.4844 13 6 4.7047 0.4998 -2.5496 14 1 5.6570 0.6936 -3.0207 15 6 3.5561 1.1218 -3.0233 16 7 2.3760 0.6002 -2.7739 17 14 3.6893 2.6996 -4.0145 18 1 5.1187 3.0763 -4.1555 19 1 3.0980 2.4899 -5.3604 20 1 2.9570 3.7863 -3.3160 21 6 5.1370 -1.7283 -1.6100 22 6 4.3626 -2.5029 -2.7051 23 6 5.3381 -3.6146 -3.1437 24 6 6.7528 -3.1217 -2.7925 25 6 6.5878 -1.7274 -2.1533 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.8552 2.7095 1.3176 32 1 1.6673 1.3445 2.1439 33 1 2.9182 3.9332 1.0692 34 1 3.1291 3.1835 2.6843 35 1 4.4585 1.3800 1.7937 36 1 5.0085 2.7623 0.7953 37 1 1.5741 1.0342 -3.1049 38 1 5.0821 -2.2511 -0.6550 39 1 4.1297 -1.8470 -3.5440 40 1 3.4508 -2.9359 -2.2936 41 1 5.1196 -4.5368 -2.6052 42 1 5.2564 -3.7806 -4.2178 43 1 7.2209 -3.8048 -2.0836 44 1 7.3577 -3.0485 -3.6963 45 1 7.2996 -1.5944 -1.3388 46 1 6.7144 -0.9466 -2.9033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449950234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:05 Heat of formation + Delta-G solvation = -72.290458 kcal Electronic energy + Delta-G solvation = -24436.201643 eV Core-core repulsion = 21323.970167 eV Total energy + Delta-G solvation = -3112.231475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26737 -39.16027 -37.48680 -35.93288 -33.88785 -33.13106 -30.20494 -29.46291 -28.37551 -28.21759 -26.53947 -23.59434 -22.60242 -21.35064 -21.24009 -20.95868 -19.92494 -18.05217 -17.58749 -17.03427 -16.50017 -16.14835 -15.96467 -15.51542 -15.34920 -14.97925 -14.45768 -14.13265 -14.08671 -13.96929 -13.46085 -13.40340 -13.15466 -12.99873 -12.74568 -12.41279 -12.32327 -12.07813 -12.03112 -11.95674 -11.87429 -11.84618 -11.77651 -11.52471 -11.37439 -11.31017 -11.17195 -11.14300 -11.01253 -10.49576 -9.96798 -9.03499 -8.13594 -6.01882 1.43039 1.51089 1.58894 2.26655 2.40424 3.08150 3.12898 3.84551 3.88857 3.91317 3.99132 4.02288 4.17346 4.41681 4.55379 4.56111 4.61417 4.68982 4.72755 4.79403 4.82146 4.84841 4.85385 4.88968 4.92776 4.95838 5.00110 5.05275 5.11930 5.16216 5.16651 5.22467 5.22913 5.30206 5.45151 5.47613 5.50635 5.56714 5.58488 5.61336 5.62251 5.80602 5.95766 6.27829 6.84210 7.15593 7.83663 8.27826 8.84219 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.008239 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.532011 B = 3397.449289 C = 3970.344187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.046 4.046 4 H 0.055 0.945 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.095 4.095 9 H 0.084 0.916 10 C 0.515 3.485 11 O -0.640 6.640 12 N -0.452 5.452 13 C -0.362 4.362 14 H 0.075 0.925 15 C 0.039 3.961 16 N -0.851 5.851 17 Si 0.945 3.055 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.121 3.879 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.121 4.121 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.268 0.732 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 1.593 1.136 2.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 C -0.065 4.065 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.116 4.116 9 H 0.103 0.897 10 C 0.307 3.693 11 O -0.528 6.528 12 N -0.169 5.169 13 C -0.490 4.490 14 H 0.092 0.908 15 C -0.169 4.169 16 N -0.484 5.484 17 Si 0.769 3.231 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.016 3.984 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.160 4.160 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.068 1.211 1.516 2.214 hybrid contribution -0.232 0.464 -0.771 0.929 sum 0.836 1.675 0.745 2.014 Atomic orbital electron populations 1.21631 0.95746 1.00473 1.01052 1.21706 0.95561 0.96688 1.01141 1.21257 0.92621 0.96056 0.96560 0.92633 1.22486 0.98420 0.98377 0.96141 1.22429 0.93516 0.97674 1.01237 1.22347 0.98619 0.98357 0.95872 1.21772 0.96467 0.93895 0.99450 0.89736 1.20596 0.77721 0.89661 0.81340 1.90427 1.63039 1.58347 1.40999 1.43467 1.54467 1.09086 1.09915 1.19065 0.93832 1.23676 1.12414 0.90753 1.25998 0.94872 1.00028 0.95975 1.70054 0.98244 1.37114 1.43005 0.85645 0.78936 0.80243 0.78257 1.18790 1.21005 1.19835 1.22050 0.94165 0.85244 0.96891 1.22338 0.96948 0.96926 0.98557 1.22056 0.94563 0.97360 1.01271 1.22019 0.96736 0.95182 1.00849 1.22513 0.95127 0.98510 0.99832 0.93431 0.93936 0.92273 0.91628 0.94600 0.90503 0.92554 0.90617 0.89951 0.93068 0.91342 0.92170 0.92591 0.92386 0.95136 0.91409 0.90987 0.90869 0.90390 0.92729 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.78 71.98 0.70 -4.12 16 2 C -0.11 -5.05 3.71 30.60 0.11 -4.94 16 3 C -0.05 -1.89 1.96 -10.07 -0.02 -1.91 16 4 H 0.06 2.36 7.70 -2.39 -0.02 2.34 16 5 C -0.12 -3.92 5.66 31.67 0.18 -3.74 16 6 C -0.11 -3.40 6.91 31.88 0.22 -3.18 16 7 C -0.11 -4.33 6.32 31.67 0.20 -4.13 16 8 C -0.09 -4.23 2.23 -10.82 -0.02 -4.25 16 9 H 0.08 3.96 4.74 -2.39 -0.01 3.94 16 10 C 0.52 26.13 4.19 87.66 0.37 26.50 16 11 O -0.64 -35.31 13.64 -3.06 -0.04 -35.36 16 12 N -0.45 -22.39 2.45 -606.42 -1.49 -23.87 16 13 C -0.36 -17.69 6.81 84.04 0.57 -17.12 16 14 H 0.07 3.63 6.77 -2.91 -0.02 3.61 16 15 C 0.04 1.86 3.22 84.93 0.27 2.13 16 16 N -0.85 -41.69 9.23 21.66 0.20 -41.49 16 17 Si 0.94 37.94 29.12 68.60 2.00 39.94 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 C 0.12 5.44 3.29 46.29 0.15 5.60 16 22 C -0.11 -4.60 6.40 31.67 0.20 -4.40 16 23 C -0.11 -3.63 6.80 31.32 0.21 -3.42 16 24 C -0.11 -3.25 6.80 31.32 0.21 -3.04 16 25 C -0.12 -4.54 6.33 31.68 0.20 -4.34 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 1.88 7.61 -2.38 -0.02 1.87 16 29 H 0.07 3.43 5.18 -2.39 -0.01 3.42 16 30 H 0.04 1.74 6.39 -2.39 -0.02 1.73 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 1.96 7.71 -2.39 -0.02 1.94 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 2.12 7.34 -2.39 -0.02 2.10 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 38 H 0.06 2.74 7.02 -2.39 -0.02 2.73 16 39 H 0.06 2.72 7.35 -2.39 -0.02 2.70 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.61 6.39 -2.39 -0.02 2.59 16 Total: -1.00 -56.98 336.39 5.18 -51.80 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.94 Total: 33.35 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 3.57 Total: -24.37 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.29 Total: -65.37 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.04 Total: -35.36 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.00 Total: 39.94 kcal Total: -56.98 5.18 -51.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.489 kcal (2) G-P(sol) polarization free energy of solvation -56.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds